Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66900 472 / 4e-154 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G66910 432 / 2e-138 Disease resistance protein (CC-NBS-LRR class) family (.1) AT4G33300 321 / 1e-96 ADR1-L1 ADR1-like 1 (.1.2) AT5G66890 280 / 6e-86 Leucine-rich repeat (LRR) family protein (.1) AT5G04720 282 / 1e-82 PHX21, ADR1-L2 PHOENIX 21, ADR1-like 2 (.1) AT5G47280 276 / 4e-82 ADR1-L3 ADR1-like 3 (.1) AT1G33560 280 / 5e-82 ADR1 ACTIVATED DISEASE RESISTANCE 1, Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G66630 159 / 2e-40 DAR5 DA1-related protein 5 (.1) AT1G69550 104 / 1e-22 disease resistance protein (TIR-NBS-LRR class) (.1) AT3G04220 96 / 6e-20 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020779 [exp] 1292 / 0 AT5G66900 434 / 5e-141 Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10022464 [exp] 595 / 0 AT5G66900 531 / 2e-177 Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10034761 [exp] 231 / 2e-66 AT5G66900 197 / 1e-54 Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10016770 [exp] 222 / 6e-61 AT5G66920 837 / 0.0 SKU5 similar 17 (.1) Lus10021769 [exp] 219 / 1e-58 AT4G33300 583 / 0.0 ADR1-like 1 (.1.2) Lus10032759 [exp] 152 / 3e-38 AT1G33560 543 / 0.0 ACTIVATED DISEASE RESISTANCE 1, Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10033299 [exp] 125 / 1e-32 AT5G66900 113 / 3e-29 Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10018616 [exp] 112 / 8e-25 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10039850 [exp] 110 / 3e-24 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G039300 [exp] 812 / 0 AT5G66900 540 / 0.0 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.007G038700 [exp] 605 / 0 AT5G66900 481 / 3e-158 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.007G039100 [exp] 594 / 0 AT5G66900 474 / 3e-156 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.007G039000 [exp] 430 / 1e-139 AT5G66900 343 / 2e-107 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.007G038900 [exp] 382 / 1e-124 AT5G66900 336 / 4e-108 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.002G129300 [exp] 322 / 4e-97 AT4G33300 902 / 0.0 ADR1-like 1 (.1.2) Potri.014G035700 [exp] 313 / 1e-93 AT4G33300 889 / 0.0 ADR1-like 1 (.1.2) Potri.007G039201 [exp] 113 / 3e-29 AT5G66910 86 / 1e-20 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.005G030700 [exp] 97 / 3e-20 AT1G69550 602 / 0.0 disease resistance protein (TIR-NBS-LRR class) (.1) Potri.009G091700 [exp] 87 / 6e-20 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05659 [flax] [poplar] RPW8 Arabidopsis broad-spectrum mildew resistance protein RPW8 CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10007359 pacid=23166252 polypeptide=Lus10007359 locus=Lus10007359.g ID=Lus10007359.BGIv1.0 annot-version=v1.0 ATGATACCAGGAACAGTGTTTCGAGACGCCGGCATCGGAGCCATAACCGGAGAGCTACTCTCAGCAGTTATGACAGCTCTAGAGAAAGCAGCTGAGTTCA GAACAGTCCTGCAAAGCCTCCAGTCCACTCTACAAACCATAATCCCGACCGTCCAGGAAATCCAAGGGCTGAACGAGAAGCTGGCGCGAAAGAAGGACGA ATTAGAGCCACTGATCAAAGACATTGAAGGAGGCGTGCAGCTCGTCAAGAAATGCTCGACAATCCGATGGTACACGTACTGGAAGAGGCCGAGGTACAGA GACAAACTCGTGAGCCTCGACGAATCGCTTACCAAGTTCTGCGCCCTTATTCTGCAGCTGCAGCAGTCGAGGGATATCAAAGAGACGTTGATCGGAGTGA ATCAGATTTTGGGTAGAAAACCGAAAAATGTAAAGGGCTACTTTGTTCCTGAGGCTATTCCGAATCCCGTGGGATTCGGAGTTCCCCTCGGGGAACTGAA GATGGAGCTTTTTAAGGAGGGGACTTCCTTGCTTGTTTTGTCTGCCCCTCCTGGTTGTGGGAAAACCACTCTGGCTAAGCTTTTATGCAATGACAAAGAT GTTAAAGAGAGGTTCAAAGACAACATATTATTCATCCCTATGTCAAAGAAAGAAACAATGGAAGGCATTGTCCAGCAAGTATACCAACTCAAGGATCAAG GCGACCCAACATTTCGAAGCGAAGAAGATGCACGCAACCAACTCGAACAACTCCTACGTAACATCGGGCCGAATCCCATACTGTTAGTTCTGGATGATGT CTGGCCAGAATCGGTTTCCCTGCTCGAAAAGCTGAAGTTCAACATTCCCGGTTACAAGATATTGGCAACTTCGAGATTGACATATCGCAATTACACAACT TACAAGCTCCATCCTCTGAACAAGAAGGATTCCAGGAAACTTTTCAACAATTCAGCATTCCCCTCCGGCCAACAACCCTCAGACATTCCGGAGGATGTTA TTAGTCCGGTAGGGTTCGCCCATTTCTGTTTGAAAGTTGTCCAACTTCCTGAGTTCATATGTGAACCTTTTGAAATGCAGATAGTCAAAGAATGCAAAGG GTACCCGCTCGCCCTTACGATTGTTGGCAAATCACTGTGTGGACTGTCTGTTGAAGAGTGGAGAACAAGAGCACTGGAGCTAACAAAAGCTGGCCCCGTT TCGCAACGAGATGAACTGAGCGAACTGTACAGTTGTCTTCAGAAAAGTTTAGATGCATTGGACAAGACGCCGACTATCAAGGAATGTTTCATGGACTTGG CTTTGTTTTCTAAAGATGATTTGGTTCCTGCAGCTGCCCTCATCGACATGTGGTCCGAGCTGTATAAGTTCGATGAAGACGGAGTGCAGGCTGTAGCAAA TCTCCATCAACTCTCTACAAGGAACCTAGCTGATCTTGTTGTCACAAGGACCGACGCAGAAGGATACAATCATCACTATGTAACGCAGCACGATCTTCTC CGGGAGCTAATCATCTATCAAAGCAACTTGGAGGCCTTTCAACAACGAGAGAGACTGATAATGGAGATATTCAGAAATGAAGTTCCTGACTGGTGGACAG ATAAAATGCAGCCTCTTGCTGTTCATTGTATCATCCTATCTATTTCCGCAGGTGCTTTTTCCATCCATCTTTCTACCTTCTCTTTCGATTCACTGCGTCT AGAAAAGCAGTTCAGCAAATCCTACGACTTTTACGATTTCAATTTACGAATCACGATTTTGACTACCTTGGTCGTTGCAGATGAAAAGTTCTCAGGAAGC TGGTGCAAAATCCAAGCACCAGAACTGAAGGCACTGGTTCTGAATTTCCGGACGAAAAGCTATCCATTGCCAGACTTCTTAACAGGATCGAACGGGATGA AGGTTCTGATGCTGATGAACTACGGCATCTCTCCAGCCGAACTAACAAACTTTCGAGTCCTCGGTTCACTCCCCAACCTGAAGAAAATCCGACTCGACCG AGTTTCGATTCCAGCATTTCTGTTCACATCTCTACAGTTCAATTCGTTGGAGAAGATCACTCTGGTCCTCTGCCATCTTGGCCAAGCTTTCGCTCCCTCG ACCCTGCTGATTTCTGTAGCCCTTCCAAACGTAAAAGAGATCAACATCGACTACTGCAAAGATCTGGTCGAGTTACCCCTCGGTATATGTAAGCTTACAA AGCTGAAGAAGCTCAGGATCACAAACTGCCATAACTTGGTCGCAATTCGCCCCGAGATATGGAGGCTGAAGAATCTGGAAGAGTTGACTCTGAGTTCTTG CATTGGATTGGCAGAGCTTCCGGAAACGATTGGTAGCCTCGAAAACCTGAGGACCCTTGATATCTCGGAATGTGCGGATGTCAGGACGCTCCCTGAAGAG ATTGGAGAGCTGAGGAACCTGAGGAAGATTCAGATGATGGGATGTTCGAGGAACTGTCACCTGCCAGATTCGATCCAGAACCTTGATTGTCTGGAGGAAG TCGGATGCGATGAAGAGACTGCTGTGTTGTGGGAACCGTTTGGTCATGTTCTTAAGAATTTGAAGATCAAGGTTCATAAGGAGGATATCAACTTGAACTG GCTCCATGGTGGCCAGTTCTGA
AA sequence Show only first row Show all	>Lus10007359 pacid=23166252 polypeptide=Lus10007359 locus=Lus10007359.g ID=Lus10007359.BGIv1.0 annot-version=v1.0 MIPGTVFRDAGIGAITGELLSAVMTALEKAAEFRTVLQSLQSTLQTIIPTVQEIQGLNEKLARKKDELEPLIKDIEGGVQLVKKCSTIRWYTYWKRPRYR DKLVSLDESLTKFCALILQLQQSRDIKETLIGVNQILGRKPKNVKGYFVPEAIPNPVGFGVPLGELKMELFKEGTSLLVLSAPPGCGKTTLAKLLCNDKD VKERFKDNILFIPMSKKETMEGIVQQVYQLKDQGDPTFRSEEDARNQLEQLLRNIGPNPILLVLDDVWPESVSLLEKLKFNIPGYKILATSRLTYRNYTT YKLHPLNKKDSRKLFNNSAFPSGQQPSDIPEDVISPVGFAHFCLKVVQLPEFICEPFEMQIVKECKGYPLALTIVGKSLCGLSVEEWRTRALELTKAGPV SQRDELSELYSCLQKSLDALDKTPTIKECFMDLALFSKDDLVPAAALIDMWSELYKFDEDGVQAVANLHQLSTRNLADLVVTRTDAEGYNHHYVTQHDLL RELIIYQSNLEAFQQRERLIMEIFRNEVPDWWTDKMQPLAVHCIILSISAGAFSIHLSTFSFDSLRLEKQFSKSYDFYDFNLRITILTTLVVADEKFSGS WCKIQAPELKALVLNFRTKSYPLPDFLTGSNGMKVLMLMNYGISPAELTNFRVLGSLPNLKKIRLDRVSIPAFLFTSLQFNSLEKITLVLCHLGQAFAPS TLLISVALPNVKEINIDYCKDLVELPLGICKLTKLKKLRITNCHNLVAIRPEIWRLKNLEELTLSSCIGLAELPETIGSLENLRTLDISECADVRTLPEE IGELRNLRKIQMMGCSRNCHLPDSIQNLDCLEEVGCDEETAVLWEPFGHVLKNLKIKVHKEDINLNWLHGGQF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66900			Disease resistance protein (CC...		Lus10007359 [exp]	0	1
AT2G30990			Protein of unknown function (D...		Lus10029830 [exp]	1.0	0.9372
AT5G49660		XIP1	XYLEM INTERMIXED WITH PHLOEM 1...		Lus10028234 [exp]	2.0	0.9367
AT3G18670			Ankyrin repeat family protein ...		Lus10016672 [exp]	2.2	0.9328
AT5G49660		XIP1	XYLEM INTERMIXED WITH PHLOEM 1...		Lus10007233 [exp]	3.5	0.9350
AT5G36930			Disease resistance protein (TI...		Lus10008526 [exp]	6.0	0.9331
AT4G27960		UBC9	ubiquitin conjugating enzyme 9...		Lus10005072 [exp]	9.2	0.9293
AT5G36930			Disease resistance protein (TI...		Lus10000331 [exp]	10.2	0.9239
AT5G02070			Protein kinase family protein ...		Lus10014387 [exp]	10.6	0.9092
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10014580 [exp]	14.4	0.9129
AT1G79430	GARP	WDY, APL	WOODY, ALTERED PHLOEM DEVELOPM...		Lus10001754 [exp]	14.5	0.9163

Compare expression of checked genes

Lus10007359 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.