Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50940 400 / 9e-136 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G50930 390 / 3e-130 BCS1 cytochrome BC1 synthesis (.1) AT2G18193 360 / 8e-120 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G18190 348 / 6e-115 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G17740 340 / 3e-111 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G17760 333 / 5e-109 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G17730 332 / 7e-109 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28610 298 / 9e-96 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28510 292 / 8e-93 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G17750 287 / 2e-92 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024275 [exp] 920 / 0 AT3G50940 434 / 2e-149 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10014284 [exp] 367 / 3e-122 AT3G50930 535 / 0.0 cytochrome BC1 synthesis (.1) Lus10015802 [exp] 363 / 5e-121 AT3G50940 462 / 9e-161 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037004 [exp] 362 / 9e-121 AT3G50930 457 / 9e-159 cytochrome BC1 synthesis (.1) Lus10003213 [exp] 339 / 8e-111 AT5G17740 430 / 7e-146 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10025989 [exp] 314 / 6e-103 AT3G50930 445 / 1e-153 cytochrome BC1 synthesis (.1) Lus10041918 [exp] 317 / 7e-102 AT3G50930 383 / 2e-126 cytochrome BC1 synthesis (.1) Lus10014496 [exp] 306 / 2e-98 AT5G40010 577 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10004258 [exp] 296 / 2e-94 AT3G28580 507 / 1e-176 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G032700 [exp] 508 / 4e-178 AT3G50930 437 / 1e-149 cytochrome BC1 synthesis (.1) Potri.007G020900 [exp] 403 / 3e-136 AT3G50930 561 / 0.0 cytochrome BC1 synthesis (.1) Potri.005G119900 [exp] 389 / 1e-130 AT5G17760 512 / 3e-179 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.007G020600 [exp] 385 / 4e-129 AT2G18193 553 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G020500 [exp] 368 / 3e-123 AT2G18193 511 / 1e-179 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G177200 [exp] 369 / 6e-123 AT3G50940 401 / 4e-136 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G020800 [exp] 364 / 7e-121 AT5G17760 506 / 1e-176 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.009G119132 [exp] 353 / 3e-116 AT3G50930 484 / 3e-166 cytochrome BC1 synthesis (.1) Potri.009G119066 [exp] 340 / 3e-111 AT3G50930 471 / 4e-161 cytochrome BC1 synthesis (.1) Potri.007G012400 [exp] 330 / 1e-108 AT3G50940 367 / 2e-123 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10007391 pacid=23157950 polypeptide=Lus10007391 locus=Lus10007391.g ID=Lus10007391.BGIv1.0 annot-version=v1.0 ATGTGGTCCCTACCCGACACAATCACCTTCCCTTCCCTCCGCCTCCCGCCGCTCTACGAAGCACAGCTCCTCTTCTCCACCGCCGCATCCCTCGCCGGCT CTGCCCTACTCTTCCGTTCCACCGTCAACAATCTCCTCCCTGAAACTCTCACCGACTACCTCTCCTCCCGCCTCAAGCACGTCACTACCGGCATCTCCTC CAACCTCACCGTCGTAATCCACGAATCCGATGGCCTCATCCCCAACCAAGTGTTCGCCCCCGCCAATCTCTACCTGGCCGCCAAGCTATCTCAATCCACC GCAAGGATCAAGGTCAACAAGCTCGAGAAGGAGAAGGCGCTTGACGTAACCATCGATCGCAACAAAGAACTCGTCGATTCCTTCAGAGGAGCTAAGATGA AATGGAGCCTGTGTTCAGCTCTTGTTTCCTCAAACTCCATCCCCTATTCTTCTCGCGGGGGAAGTGGAATCCAAACCGCGTTCGTCAGACCGGAGGTTCA TCACTTCGAGCTCACCTTCCACAAGAAGCACCGCAAGCTGGTGCTTGGGACCTACCTACCTCACATCTTGGCGGAGACCAAATCGATTAGGGAGGCCAAT AAGACGGTGAAACTTCACACCATTGATTACAACGGGGTCGACTACTGGGGATCCATCGTGTTCGACCATCCGGCCACGTTCGAGACAATCACCATGGATC CAGAGACGAAGAAGGCGCTGGTCACAGATCTGGATACTTTCGTCGAGCGGAAGGATTTCTACAGGAAGGTAGGCAAAGCGTGGAAGCGCGGATACTTGTT GCACGGACCTCCTGGGACAGGGAAATCAAGCTTGGTCGCCGCCATGGCTAATTACCTCAAGTTTGACATCTACGACCTCGATTTAAAAGAGGTACAATGC AATTCCGATCTGCGGAGGTTGCTGATTGGCACCGGCAACAGATCTATCGTGGTACTCGAGGACATCGATCGAACTTTCGCTGCTGTCGATCAGACAGAGA AGGTAAAACGGAGTCCAGGATTAATTTCGAATTTTAGACATAAAAACCTGGTTACACTGGCGGGGCTTCTGAACTTTGTGGACGGACTATGGTCGACGTG CGGGGAAGAGAGGATACTAGTATTCACGACCAATAACAAGGAGGATCTGGATCCGGCATTGCTGAGGCCAGGAAGGATTGATGTAGAGCTGCAGATGTCC TACTGCTCATTCACTGCGTTCAAGACTCTAGCGTACAATTACTTTGAGGAAACGGAGCATGAGCTGTTCGAGGAGATTAAGGAGCTGCTGCAGGATGTTG ATGCTACTCCTGCTGAGATTGCAGGTGAGTTGCTCAAGAGCAAGAACGTTGATGTTGCGCTGCATGGTGTTGTGAAGCTGCTGAGGAGTAAAGAGTCTGT AGGTGCTGCTGACGAAACTAAAACTGTGGTGCCATTGGCTATAGGGATGGCGGCATCACAGAATGTAGTGGAGAGGAACAGCTGGGGTGGTGCTTATCAT TACAATGGCTACGAATAG
AA sequence Show only first row Show all	>Lus10007391 pacid=23157950 polypeptide=Lus10007391 locus=Lus10007391.g ID=Lus10007391.BGIv1.0 annot-version=v1.0 MWSLPDTITFPSLRLPPLYEAQLLFSTAASLAGSALLFRSTVNNLLPETLTDYLSSRLKHVTTGISSNLTVVIHESDGLIPNQVFAPANLYLAAKLSQST ARIKVNKLEKEKALDVTIDRNKELVDSFRGAKMKWSLCSALVSSNSIPYSSRGGSGIQTAFVRPEVHHFELTFHKKHRKLVLGTYLPHILAETKSIREAN KTVKLHTIDYNGVDYWGSIVFDHPATFETITMDPETKKALVTDLDTFVERKDFYRKVGKAWKRGYLLHGPPGTGKSSLVAAMANYLKFDIYDLDLKEVQC NSDLRRLLIGTGNRSIVVLEDIDRTFAAVDQTEKVKRSPGLISNFRHKNLVTLAGLLNFVDGLWSTCGEERILVFTTNNKEDLDPALLRPGRIDVELQMS YCSFTAFKTLAYNYFEETEHELFEEIKELLQDVDATPAEIAGELLKSKNVDVALHGVVKLLRSKESVGAADETKTVVPLAIGMAASQNVVERNSWGGAYH YNGYE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50940			P-loop containing nucleoside t...		Lus10007391 [exp]	0	1
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10004712 [exp]	8.9	0.7907
AT2G02760		ATUBC2	ubiquitin-conjugating enzyme 2...		Lus10036727 [exp]	9.5	0.7776
AT1G08480		SDH6	succinate dehydrogenase 6, unk...		Lus10013373 [exp]	31.5	0.7556
AT1G16210			unknown protein		Lus10012520 [exp]	34.4	0.7420
AT1G03070			Bax inhibitor-1 family protein...		Lus10042631 [exp]	39.9	0.7333
AT1G14340			RNA-binding (RRM/RBD/RNP motif...		Lus10012843 [exp]	40.5	0.7333
AT3G48030			hypoxia-responsive family prot...		Lus10002358 [exp]	48.8	0.7271
AT1G17710		AtPEPC1	Arabidopsis thaliana phosphoet...		Lus10008479 [exp]	52.7	0.6944
AT2G20860		LIP1	lipoic acid synthase 1 (.1)		Lus10031630 [exp]	57.2	0.7203
AT5G45320			unknown protein		Lus10035675 [exp]	63.4	0.6650

Compare expression of checked genes

Lus10007391 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.