Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17720 447 / 9e-154 ATBBETA, ATB BETA Protein phosphatase 2A, regulatory subunit PR55 (.1.2) AT1G51690 426 / 1e-145 ATB ALPHA, ATBALPHA protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform (.1.2.3) AT5G07475 89 / 2e-20 Cupredoxin superfamily protein (.1) AT5G53870 73 / 7e-14 AtENODL1 early nodulin-like protein 1 (.1) AT1G72230 66 / 1e-12 Cupredoxin superfamily protein (.1) AT2G25060 65 / 4e-12 AtENODL14 early nodulin-like protein 14 (.1) AT4G27520 67 / 6e-12 AtENODL2 early nodulin-like protein 2 (.1) AT4G31840 62 / 4e-11 AtENODL15 early nodulin-like protein 15 (.1) AT2G32300 61 / 5e-10 UCC1 uclacyanin 1 (.1) AT3G60270 59 / 7e-10 Cupredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012083 [exp] 528 / 0 AT1G17720 669 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Lus10015635 [exp] 493 / 1e-171 AT1G17720 878 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Lus10037653 [exp] 492 / 3e-171 AT1G17720 879 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Lus10001239 [exp] 284 / 5e-90 AT1G17720 576 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Lus10042101 [exp] 233 / 1e-70 AT1G17720 570 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Lus10012085 [exp] 218 / 4e-69 AT5G07475 142 / 4e-43 Cupredoxin superfamily protein (.1) Lus10027143 [exp] 69 / 3e-13 AT2G32300 137 / 9e-40 uclacyanin 1 (.1) Lus10008720 [exp] 64 / 1e-11 AT1G72230 140 / 2e-42 Cupredoxin superfamily protein (.1) Lus10020944 [exp] 62 / 9e-11 AT1G72230 141 / 1e-42 Cupredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G197300 [exp] 473 / 1e-163 AT1G17720 861 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Potri.003G034300 [exp] 462 / 1e-159 AT1G17720 840 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Potri.006G231000 [exp] 449 / 2e-154 AT1G17720 831 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Potri.018G055001 [exp] 446 / 3e-153 AT1G17720 823 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Potri.015G079300 [exp] 292 / 2e-93 AT1G17720 547 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Potri.001G080700 [exp] 118 / 6e-31 AT5G07475 164 / 1e-51 Cupredoxin superfamily protein (.1) Potri.003G150300 [exp] 115 / 4e-30 AT5G07475 178 / 2e-57 Cupredoxin superfamily protein (.1) Potri.014G049600 [exp] 72 / 2e-14 AT3G60270 111 / 8e-31 Cupredoxin superfamily protein (.1) Potri.001G187700 [exp] 67 / 6e-13 AT1G79800 176 / 2e-56 early nodulin-like protein 7 (.1) Potri.007G120200 [exp] 67 / 3e-12 AT2G32300 118 / 3e-32 uclacyanin 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10007401 pacid=23175825 polypeptide=Lus10007401 locus=Lus10007401.g ID=Lus10007401.BGIv1.0 annot-version=v1.0 ATGGGGGAAGGAGAAAGGGAGAGGAGTGTAGGGGATAGTGGAGGAGGGGAAAGAGGGAGGGTGGTGGTTGGGGAGAGGAAGGGTGGCGGCTGGTGGCTGG CGGCGAGGGAAGGGGAAGAGGAAGGAAGGGGAGGAGAAGGAAGAGAGGGAAAAGATAAGGGAAGGAGGGGCGGCGGGGAGAAAGTTGATATAATTTCAGC CATAGAATTTGATAAATCTGGGGATCATCTTGCTACTGGGGATCGTGGAGGGCGAGTGGTTCTGTTTGAGAGGACAGATACCAAGGATCATGGTGGGGCA AGGAGAGATTTGGAAAGGATCGATTATCCAATTAGTAGGCATCCCGAGTTCCGTTACAAAACAGAATTTCAGAGTCACGAGCCGGAGGTCCAAGAAAAGA AGGTTAAGAAGATCTCTGAGATGAATGTTGACCGTTCAAAAGCTGTTGGAAATGGCAGTGTTGCTAGTTCAAGTAATTCAAGTGCTCCTAAGCCATGTCT TGCAAATGGTGGTTGCGTTGATAGGTTGCACAACTCTTTAAGCAATGATTTCAAAATCCCAGCCGGAGGCTTCCCATCTCTGCGTTTGCCCGTGGTTTAT AGCACAGAGATGAGTTTGATGGCCAAATGTCGCAGGGTGTATGCTCATGCTCATGATTATCACATTAATTCCATTTCAAACAATAGTGATGGTGAGACTT TTATATCAGCTGATGATTTGCGAATAAATCTTTGGAACTTGGAAATTAGCAACCAAAGTTTCAATATTGTTGATGTGAAACCTGCAAATATGGAGGATCT AACTGAGGTAATAACTTCAGCCGAATTCCACCCAAACCAATGTAATATGTTAGCTTATAGCAGTTCAAAAGGCTCAATCAGATTAATTGATCTACGGCAA TCAGCTCTCTGCGATTCTCATGCCAAACTCTTTGAAGAACAGGAGGCCCCTGGCTCTAGGTCATTTTTCACAGAGATAATTGCATCCATCTCTGATATTA AATTTGCAAAAGATGGACGACATTTACTTAGTCGTGATTACATGACCCTAAAGGTTGGTGTTTTTCTGGCGAATAACTTCGTGTTTCAGTATAAATCCTC AGAGATAGTAGAAGAAGTGAACAAAGCATCTTTCGACGGCTGCAACACGAGGGAAGTAATGAAATCGTTCAACGACGGGAACACGACGGTGGAATTGGAC AGGGGTGGACCCTGGTATTTCATCTGTGGAAATAAGTTGTACTGCTTTGGAGGGATGAAGCTCCAGGTGGACGTCAAAGGCAATCAGGCTGAAGCAGATT CACCAATTAGTTCCCCCGAGGGGCAGCCTGCAAACCCTTCTTCCAAGACCGACTTCCCCTCTTCTTCCGCTTTTGTTCATCGCAGCACCGAGACTCTTGT GATCATTTTTGTGAGCTTCTCCAGCATGTTATGGGTCATTCATCTCTGA
AA sequence Show only first row Show all	>Lus10007401 pacid=23175825 polypeptide=Lus10007401 locus=Lus10007401.g ID=Lus10007401.BGIv1.0 annot-version=v1.0 MGEGERERSVGDSGGGERGRVVVGERKGGGWWLAAREGEEEGRGGEGREGKDKGRRGGGEKVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDHGGA RRDLERIDYPISRHPEFRYKTEFQSHEPEVQEKKVKKISEMNVDRSKAVGNGSVASSSNSSAPKPCLANGGCVDRLHNSLSNDFKIPAGGFPSLRLPVVY STEMSLMAKCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPNQCNMLAYSSSKGSIRLIDLRQ SALCDSHAKLFEEQEAPGSRSFFTEIIASISDIKFAKDGRHLLSRDYMTLKVGVFLANNFVFQYKSSEIVEEVNKASFDGCNTREVMKSFNDGNTTVELD RGGPWYFICGNKLYCFGGMKLQVDVKGNQAEADSPISSPEGQPANPSSKTDFPSSSAFVHRSTETLVIIFVSFSSMLWVIHL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51690		ATB ALPHA, ATBA...	protein phosphatase 2A 55 kDa ...		Lus10007401 [exp]	0	1
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10043456 [exp]	10.7	0.8314
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10025070 [exp]	11.5	0.7933
AT5G24260			prolyl oligopeptidase family p...		Lus10018107 [exp]	12.0	0.7097
AT5G05570			transducin family protein / WD...		Lus10037841 [exp]	15.7	0.7993
AT5G35180			Protein of unknown function (D...		Lus10019591 [exp]	16.3	0.7818
AT3G51050			FG-GAP repeat-containing prote...		Lus10014275 [exp]	18.9	0.7908
AT5G62600		MOS14	modifier of snc1-1, 14, ARM re...		Lus10042159 [exp]	23.7	0.7901
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Lus10004490 [exp]	24.7	0.7663
AT5G28850			Calcium-binding EF-hand family...		Lus10029614 [exp]	27.8	0.7606
AT1G73920			alpha/beta-Hydrolases superfam...		Lus10042973 [exp]	28.7	0.7812

Compare expression of checked genes

Lus10007401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.