Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25950 265 / 6e-85 Protein of Unknown Function (DUF239) (.1) AT2G44210 263 / 1e-84 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT5G56530 258 / 2e-82 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT1G55360 254 / 6e-81 Protein of Unknown Function (DUF239) (.1) AT3G13510 249 / 3e-79 Protein of Unknown Function (DUF239) (.1) AT5G25960 248 / 3e-79 Protein of Unknown Function (DUF239) (.1) AT2G44220 242 / 2e-76 Protein of Unknown Function (DUF239) (.1) AT2G44240 236 / 3e-74 Protein of Unknown Function (DUF239) (.1) AT5G18460 232 / 3e-72 Protein of Unknown Function (DUF239) (.1) AT5G50150 225 / 8e-70 Protein of Unknown Function (DUF239) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013410 [exp] 259 / 7e-83 AT3G13510 708 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10005502 [exp] 249 / 9e-83 AT2G44210 94 / 9e-24 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) Lus10004766 [exp] 248 / 5e-78 AT5G18460 603 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10003100 [exp] 227 / 9e-70 AT5G18460 593 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10010315 [exp] 223 / 2e-69 AT3G13510 626 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10013046 [exp] 219 / 2e-66 AT1G10750 642 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10001248 [exp] 216 / 6e-66 AT5G50150 580 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10029116 [exp] 216 / 2e-65 AT1G10750 642 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10042092 [exp] 204 / 8e-62 AT5G50150 540 / 0.0 Protein of Unknown Function (DUF239) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G233600 [exp] 424 / 3e-147 AT5G25950 310 / 3e-102 Protein of Unknown Function (DUF239) (.1) Potri.006G233700 [exp] 295 / 2e-97 AT5G25950 333 / 1e-111 Protein of Unknown Function (DUF239) (.1) Potri.001G233000 [exp] 257 / 6e-82 AT3G13510 621 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.003G221200 [exp] 252 / 3e-80 AT1G55360 716 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.001G003800 [exp] 252 / 4e-80 AT1G55360 689 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.013G050100 [exp] 243 / 9e-77 AT5G18460 635 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.019G024100 [exp] 243 / 3e-76 AT5G18460 622 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.015G080300 [exp] 222 / 6e-68 AT5G50150 637 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.012G088300 [exp] 219 / 2e-67 AT5G50150 592 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.010G044300 [exp] 217 / 6e-66 AT1G70550 664 / 0.0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03080 [flax] [poplar] Neprosin Neprosin
Representative CDS sequence Show only first row Show all	>Lus10007458 pacid=23178405 polypeptide=Lus10007458 locus=Lus10007458.g ID=Lus10007458.BGIv1.0 annot-version=v1.0 ATGGAAGTAGTTGTAGTTGTGAAGTTGCTGCTTGTGATTCTTACTGTTGGTCTGGAAGGAGGAAGAGTTATAATATTGCTGGGCGCTACTAAGTCTACAT CACCATACATCTCTACTGTCATTCAGAGCGAGGATGGGGACGTGATAGAGTGCATTGAGATGGAGAAGCAGCCTGCATTTGAACATCCTGCTCTCAGAAA TCACACCATTCAAATGGCACCCACCTACGCCATTAATATGTCGACATCATCGGAGCACAAACAGCTGCTAGCGGCGGGGCAGCTATGGAGGAGAAGTGGT AGCTGCCCTCAAGGCACCATCCCACGACGGATCACTAAAACAACAGCCAAAGTAGAAATCGAGAGAGACCAAAATAGGTCTTTCAACCAACTCAGCATGA ATCGCTCAAGGGCGATAATGATGACAGGGGGTTACAGTTACTCAGGGGTGAAAGGCAACATTCGAGTTTGGAATCCTCACGTCGAAGACGACGATTACTC CCTTTCCCACGTCAGTCTTGTCAGTGGCGGCATCTACGACTTTGAGACCATTCGCTCCGGCTGGTCGGTCAATCCCAAATTGTACGGGGATACACAAACT CGCCTTTTTGTATATTGGACGGTGGATGGGTCGAAGAAAACGGGTTGCTTCGACCTAAACTGCCCTGGTTTCATACAGACCAGCAGCGAGATAGCACTTG GTTCCGCCATATATCCAATCTCACTCCCTACTTCATCGCTTCCATACGAGATTATCATCTACATCTCAAAGGATCCTGTGACGGGTAACTGGTGGGTGGA GTACGGAGAGAATGTTTACCTCGGATACTGGCCGCGTGGACTGTTTACTTTGCTAGCAGCTGGAAATGCACAGTCTGCTGAGTGGGGAGGGGAAGTTTAC AGTACACAGTTGGGCAGGGCACCACACACTACAACCGGAATGGGGAGCGGGAGTTTTGCTGACCATATATCTGGTGGTTCGGGGTGGGTCAAGAGAATCC GGGTGAGGGAGAACTCTGTGGCTCTCAGGTTCCCTGAATGGGTTAACATTTTCTCCGATGAGTTTAATTGCTACGACACTTATCTCGTCATGGACTACAT CCCTGACCCTGAGTTCTACTACGGCGGTCCAGGCAGAAACCCTATTTGCCGTTAA
AA sequence Show only first row Show all	>Lus10007458 pacid=23178405 polypeptide=Lus10007458 locus=Lus10007458.g ID=Lus10007458.BGIv1.0 annot-version=v1.0 MEVVVVVKLLLVILTVGLEGGRVIILLGATKSTSPYISTVIQSEDGDVIECIEMEKQPAFEHPALRNHTIQMAPTYAINMSTSSEHKQLLAAGQLWRRSG SCPQGTIPRRITKTTAKVEIERDQNRSFNQLSMNRSRAIMMTGGYSYSGVKGNIRVWNPHVEDDDYSLSHVSLVSGGIYDFETIRSGWSVNPKLYGDTQT RLFVYWTVDGSKKTGCFDLNCPGFIQTSSEIALGSAIYPISLPTSSLPYEIIIYISKDPVTGNWWVEYGENVYLGYWPRGLFTLLAAGNAQSAEWGGEVY STQLGRAPHTTTGMGSGSFADHISGGSGWVKRIRVRENSVALRFPEWVNIFSDEFNCYDTYLVMDYIPDPEFYYGGPGRNPICR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44210			Protein of Unknown Function (D...		Lus10007458 [exp]	0	1
AT5G18560	AP2_ERF	PUCHI	Integrase-type DNA-binding sup...		Lus10026053 [exp]	4.6	0.7173
AT1G44110		CYCA1;1	Cyclin A1;1 (.1)		Lus10014199 [exp]	8.9	0.5960
AT1G16130		WAKL2	wall associated kinase-like 2 ...		Lus10034085 [exp]	19.3	0.5202
AT1G13570			F-box/RNI-like superfamily pro...		Lus10041818 [exp]	19.4	0.6395
AT3G29410		AtTPS25	Terpenoid cyclases/Protein pre...		Lus10038330 [exp]	23.4	0.6293
AT4G37740	GRF	ATGRF2	growth-regulating factor 2 (.1...		Lus10008916 [exp]	24.3	0.5740
AT4G38590		BGAL14	beta-galactosidase 14 (.1.2)		Lus10014125 [exp]	24.7	0.5943
					Lus10025095 [exp]	32.7	0.6061
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10003302 [exp]	34.2	0.5931
AT2G24050		eIFiso4G2	eukaryotic translation Initiat...		Lus10036256 [exp]	38.5	0.6015

Compare expression of checked genes

Lus10007458 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.