Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37260 181 / 5e-56 MYB ATMYB73 myb domain protein 73 (.1) AT3G50060 172 / 1e-52 MYB ATMYB77 myb domain protein 77 (.1) AT5G67300 172 / 1e-52 MYB ATMYB44, AtMYBr1 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 44, myb domain protein r1 (.1) AT2G23290 172 / 2e-52 MYB ATMYB70 myb domain protein 70 (.1) AT3G55730 164 / 3e-48 MYB ATMYB109 myb domain protein 109 (.1) AT3G09230 156 / 2e-45 MYB ATMYB1 myb domain protein 1 (.1) AT2G39880 152 / 5e-44 MYB ATMYB25 myb domain protein 25 (.1) AT1G69560 133 / 2e-37 MYB LOF2, ATMYB105 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) AT1G26780 132 / 3e-37 MYB LOF1, ATMYB117 LATERAL ORGAN FUSION 1, myb domain protein 117 (.1.2) AT4G33450 130 / 8e-37 MYB ATMYB69 myb domain protein 69 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028979 [exp] 357 / 5e-126 AT4G37260 181 / 1e-55 myb domain protein 73 (.1) Lus10040940 [exp] 251 / 2e-84 AT4G37260 176 / 2e-54 myb domain protein 73 (.1) Lus10010238 [exp] 182 / 2e-56 AT4G37260 271 / 4e-90 myb domain protein 73 (.1) Lus10014103 [exp] 180 / 3e-56 AT4G37260 213 / 2e-68 myb domain protein 73 (.1) Lus10010055 [exp] 181 / 5e-56 AT4G37260 259 / 2e-85 myb domain protein 73 (.1) Lus10021762 [exp] 176 / 2e-54 AT2G23290 179 / 8e-55 myb domain protein 70 (.1) Lus10010260 [exp] 172 / 3e-52 AT5G67300 288 / 5e-96 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 44, myb domain protein r1 (.1) Lus10032764 [exp] 169 / 7e-52 AT4G37260 182 / 5e-56 myb domain protein 73 (.1) Lus10030336 [exp] 172 / 1e-51 AT4G37260 290 / 1e-96 myb domain protein 73 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G070900 [exp] 222 / 1e-72 AT4G37260 173 / 2e-52 myb domain protein 73 (.1) Potri.014G035100 [exp] 186 / 1e-58 AT4G37260 183 / 1e-56 myb domain protein 73 (.1) Potri.007G048900 [exp] 186 / 7e-58 AT4G37260 273 / 2e-90 myb domain protein 73 (.1) Potri.005G142600 [exp] 185 / 4e-57 AT4G37260 246 / 7e-80 myb domain protein 73 (.1) Potri.002G128900 [exp] 181 / 1e-56 AT4G37260 179 / 2e-55 myb domain protein 73 (.1) Potri.002G122600 [exp] 179 / 3e-55 AT4G37260 258 / 6e-85 myb domain protein 73 (.1) Potri.014G022500 [exp] 177 / 2e-54 AT4G37260 226 / 3e-72 myb domain protein 73 (.1) Potri.009G096000 [exp] 173 / 1e-53 AT4G37260 222 / 1e-71 myb domain protein 73 (.1) Potri.001G300200 [exp] 172 / 4e-53 AT4G37260 203 / 1e-64 myb domain protein 73 (.1) Potri.010G195000 [exp] 163 / 4e-48 AT3G55730 295 / 7e-97 myb domain protein 109 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10007503 pacid=23176487 polypeptide=Lus10007503 locus=Lus10007503.g ID=Lus10007503.BGIv1.0 annot-version=v1.0 ATGGAACCGCCGTCTTCTTCCACCGCCGATCGGATCAAAGGCTCGTGGAGCCCACAGGAGGACGTAGCACTCATCAAGCTCGTCCAGCAGCACGGCCCGA GGAACTGGTCCATGATCAGCTCCGGAATCCCCGGCCGCTCCGGCAAGTCCTGCAGGCTTCGGTGGTGCAATCAGCTCTCGCCCGACGTCCAGCACCGCCC TTTTACTCCGGCCGAGGACGCCGTCATCGTCCGTGCTCACTCCCTCCACGGAAACAAGTGGGCCACCATCTCCCGCCTCCTCCCCGGGCGGACCGACAAC GCGATTAAAAACCACTGGAACTCCACGCTCCGCCGCAAGCGCGCGGCGGGGAAGAATCTGGATTTTGCGGTGCCTTCCGACTCGAATCTTGCTGATTCGG AGGGCGAATCGGGTAGTAACAAGAAGCTCTGCTTACGTCTTGTTGATGATGATATTGGTAATGGAAGTGAGGGGGAGATTATTACTACGTCGTTGACGCT GTGTCCGCCGGGAGCTGAGGAAGATGTGGCGGCGGAGGAAAGCGGGGAGAAGGAAAAGTGGTTGAAGGCGGCGGCGGCGGCGGCGGCGGAGGAGGAGGAG AGTTGTTTGTTGGAGATCATGCAAAGGATGGTCGCAGACGAAGTTGGGAGTTACATCGATAGATTGAAAGCGCAAGATGGGCTTAATCTTGGGCCTAATC CAGAGCCTGTGGACCGTCATGACCCATGA
AA sequence Show only first row Show all	>Lus10007503 pacid=23176487 polypeptide=Lus10007503 locus=Lus10007503.g ID=Lus10007503.BGIv1.0 annot-version=v1.0 MEPPSSSTADRIKGSWSPQEDVALIKLVQQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPDVQHRPFTPAEDAVIVRAHSLHGNKWATISRLLPGRTDN AIKNHWNSTLRRKRAAGKNLDFAVPSDSNLADSEGESGSNKKLCLRLVDDDIGNGSEGEIITTSLTLCPPGAEEDVAAEESGEKEKWLKAAAAAAAEEEE SCLLEIMQRMVADEVGSYIDRLKAQDGLNLGPNPEPVDRHDP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Lus10007503 [exp]	0	1
AT1G74830			Protein of unknown function, D...		Lus10036656 [exp]	3.5	0.8081
					Lus10001257 [exp]	5.5	0.8033
AT4G38810			Calcium-binding EF-hand family...		Lus10012178 [exp]	15.4	0.7530
AT1G71690			Protein of unknown function (D...		Lus10003512 [exp]	15.6	0.7769
AT1G29380			Carbohydrate-binding X8 domain...		Lus10025379 [exp]	19.8	0.7656
AT1G72470		ATEXO70D1	exocyst subunit exo70 family p...		Lus10013163 [exp]	21.7	0.7652
AT5G43470		HRT, RCY1, RPP8	RECOGNITION OF PERONOSPORA PAR...		Lus10025625 [exp]	26.5	0.7282
AT2G23810		TET8	tetraspanin8 (.1)		Lus10008891 [exp]	28.4	0.7530
AT4G13450			Adenine nucleotide alpha hydro...		Lus10014459 [exp]	31.1	0.7425
AT3G45640		ATMAPK3, ATMPK3	mitogen-activated protein kina...		Lus10018127 [exp]	32.6	0.7518

Compare expression of checked genes

Lus10007503 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.