Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40260 144 / 1e-39 GARP Homeodomain-like superfamily protein (.1) AT2G38300 134 / 1e-36 GARP myb-like HTH transcriptional regulator family protein (.1) AT2G42660 111 / 1e-28 GARP Homeodomain-like superfamily protein (.1) AT2G02060 94 / 2e-22 GARP Homeodomain-like superfamily protein (.1) AT1G14600 94 / 3e-22 GARP Homeodomain-like superfamily protein (.1) AT5G42630 87 / 3e-20 GARP KAN4, KANADI4, ATS KANADI 4, ABERRANT TESTA SHAPE, Homeodomain-like superfamily protein (.1.2) AT4G04580 82 / 7e-19 GARP Homeodomain-like superfamily protein (.1) AT1G32240 86 / 1e-18 GARP KAN2, KANADI2 KANADI 2, Homeodomain-like superfamily protein (.1) AT5G16560 85 / 3e-18 GARP KAN1, KAN KANADI 1, KANADI, Homeodomain-like superfamily protein (.1) AT5G29000 84 / 4e-18 GARP PHL1 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017442 [exp] 471 / 1e-168 AT2G38300 148 / 3e-41 myb-like HTH transcriptional regulator family protein (.1) Lus10040945 [exp] 172 / 6e-51 AT2G40260 159 / 2e-45 Homeodomain-like superfamily protein (.1) Lus10012239 [exp] 135 / 3e-37 AT2G38300 170 / 3e-50 myb-like HTH transcriptional regulator family protein (.1) Lus10002207 [exp] 134 / 6e-37 AT2G38300 171 / 9e-51 myb-like HTH transcriptional regulator family protein (.1) Lus10029225 [exp] 100 / 2e-25 AT2G38300 110 / 5e-30 myb-like HTH transcriptional regulator family protein (.1) Lus10001149 [exp] 102 / 6e-25 AT2G40260 119 / 1e-30 Homeodomain-like superfamily protein (.1) Lus10007279 [exp] 98 / 8e-25 AT2G38300 107 / 1e-28 myb-like HTH transcriptional regulator family protein (.1) Lus10022886 [exp] 92 / 1e-20 AT4G28610 310 / 7e-102 phosphate starvation response 1 (.1) Lus10024938 [exp] 91 / 5e-20 AT4G28610 314 / 2e-103 phosphate starvation response 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G185700 [exp] 160 / 2e-46 AT2G40260 188 / 5e-56 Homeodomain-like superfamily protein (.1) Potri.008G071700 [exp] 159 / 1e-45 AT2G40260 166 / 2e-47 Homeodomain-like superfamily protein (.1) Potri.016G121800 [exp] 144 / 3e-40 AT2G38300 183 / 1e-54 myb-like HTH transcriptional regulator family protein (.1) Potri.009G075100 [exp] 127 / 5e-34 AT2G38300 162 / 4e-47 myb-like HTH transcriptional regulator family protein (.1) Potri.004G057900 [exp] 119 / 8e-31 AT2G38300 139 / 7e-38 myb-like HTH transcriptional regulator family protein (.1) Potri.001G280000 [exp] 118 / 2e-30 AT2G38300 140 / 2e-38 myb-like HTH transcriptional regulator family protein (.1) Potri.011G067150 [exp] 113 / 2e-28 AT2G38300 128 / 1e-33 myb-like HTH transcriptional regulator family protein (.1) Potri.008G142000 [exp] 102 / 3e-25 AT1G14600 130 / 2e-36 Homeodomain-like superfamily protein (.1) Potri.004G010000 [exp] 99 / 6e-24 AT2G02060 120 / 3e-32 Homeodomain-like superfamily protein (.1) Potri.010G099600 [exp] 99 / 7e-24 AT1G14600 126 / 9e-35 Homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10007513 pacid=23176524 polypeptide=Lus10007513 locus=Lus10007513.g ID=Lus10007513.BGIv1.0 annot-version=v1.0 ATGCCGAGGCTTAGGTGGACCCCGGATCTTCATCTCTCCTTTCTCCAAGCTGTTGACAGGCTCGGCGGTCAAGAGAGAGCAACCCCAAAGCTGGTTCTTC AACTGATGAACATCAAAGGACTCAGCATCGCTCATGTCAAAAGCCATCTTCAGATGTACAGAAGCAAGAAGTTTGATGATCCAAATCAAGGTAATGCGCA AGGTGTTTTATTTCAAGGGAGGGATAGCCATGGCTACAACCTAAGCCAGCTTCCAATGCTTCAAAGATTCAACTATGGCCCTTCCTCACCTGCTAATTCT AGATATGGAAATTACTCATCATCATGGAGGAGAGGGCACAACATATGTGGAACAAACTACATAGGAGGAGGAAGATTAGCCACAAGTAGCCTTTATGGTT ACAACAATCACAAGCCATTCACTACTAAGTACTCATCATGTGATTCACCCAACAACAACATTAATCTTCCTTCTTCCCTCATGCTCAAAGGAATACCAAC ATCAACCAAAAGTACAAGTACTACTCACCCCAACCACTCATCTACTTTTGAGAACACTGCCAAGTTCTTGTTCCATAGATGGCCACCCCAAATCCTCGCC AAGCCCGCATCCCCGGCCTTGGAAGAATCTACTACCAACGACATTATTAACCTCGGTGGCTTCAAGAGGAAACTTATGTCAATGCGCCCGGTTCAATCTG GTGATCACTTGGATTTGGAGTTGTCTTTGAAGGTGTCGAAACAGGCCAAGGTGGACATGGGAGGTAATGATTATGCTGTTAACGTTGTTGATCTCGACCC AGAGAGTAGTCTGTCTTTGTCTCTATCGTCTTCTTCGTCTTCGAAGATCAGTGAAGTTGTTAGGAGGGACAATAAGTATAATAGTAGTGTTGTTATGAAT GAGGGTGTTGATAGTAAGCGTGCCAGGATGGCAAGTACTCTAGATCTGACTTTGTGA
AA sequence Show only first row Show all	>Lus10007513 pacid=23176524 polypeptide=Lus10007513 locus=Lus10007513.g ID=Lus10007513.BGIv1.0 annot-version=v1.0 MPRLRWTPDLHLSFLQAVDRLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSKKFDDPNQGNAQGVLFQGRDSHGYNLSQLPMLQRFNYGPSSPANS RYGNYSSSWRRGHNICGTNYIGGGRLATSSLYGYNNHKPFTTKYSSCDSPNNNINLPSSLMLKGIPTSTKSTSTTHPNHSSTFENTAKFLFHRWPPQILA KPASPALEESTTNDIINLGGFKRKLMSMRPVQSGDHLDLELSLKVSKQAKVDMGGNDYAVNVVDLDPESSLSLSLSSSSSSKISEVVRRDNKYNSSVVMN EGVDSKRARMASTLDLTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40260	GARP		Homeodomain-like superfamily p...		Lus10007513 [exp]	0	1
AT2G38300	GARP		myb-like HTH transcriptional r...		Lus10017442 [exp]	1.4	0.9708
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Lus10024078 [exp]	1.7	0.9775
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10010871 [exp]	2.4	0.9652
AT2G18150			Peroxidase superfamily protein...		Lus10028337 [exp]	2.4	0.9688
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10028897 [exp]	2.8	0.9663
AT2G24370			Protein kinase protein with ad...		Lus10040573 [exp]	3.6	0.9581
					Lus10002465 [exp]	3.7	0.9650
AT2G20030			RING/U-box superfamily protein...		Lus10034953 [exp]	4.0	0.9528
AT3G10660		ATCPK2, CPK2	calmodulin-domain protein kina...		Lus10033400 [exp]	4.1	0.9527
AT5G25140		CYP71B13	"cytochrome P450, family 71, s...		Lus10018263 [exp]	4.9	0.9598

Compare expression of checked genes

Lus10007513 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.