Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05390 783 / 0 LAC12 laccase 12 (.1) AT2G40370 778 / 0 LAC5 laccase 5 (.1) AT2G30210 636 / 0 LAC3 laccase 3 (.1) AT5G07130 627 / 0 LAC13 laccase 13 (.1) AT2G29130 491 / 6e-170 LAC2, ATLAC2 laccase 2 (.1) AT5G01190 490 / 9e-170 LAC10 laccase 10 (.1) AT2G38080 487 / 1e-168 ATLMCO4, IRX12, LAC4 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) AT5G60020 480 / 8e-166 LAC17, ATLAC17 laccase 17 (.1) AT5G09360 480 / 1e-165 LAC14 laccase 14 (.1) AT5G03260 479 / 2e-165 LAC11 laccase 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017426 [exp] 939 / 0 AT2G40370 805 / 0.0 laccase 5 (.1) Lus10009841 [exp] 855 / 0 AT5G05390 811 / 0.0 laccase 12 (.1) Lus10040957 [exp] 840 / 0 AT5G05390 810 / 0.0 laccase 12 (.1) Lus10017427 [exp] 753 / 0 AT2G40370 894 / 0.0 laccase 5 (.1) Lus10007531 [exp] 748 / 0 AT2G40370 799 / 0.0 laccase 5 (.1) Lus10042249 [exp] 593 / 0 AT2G30210 696 / 0.0 laccase 3 (.1) Lus10027747 [exp] 539 / 0 AT3G09220 707 / 0.0 laccase 7 (.1) Lus10035546 [exp] 537 / 0 AT3G09220 710 / 0.0 laccase 7 (.1) Lus10002227 [exp] 503 / 1e-174 AT5G03260 926 / 0.0 laccase 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G183500 [exp] 817 / 0 AT5G05390 915 / 0.0 laccase 12 (.1) Potri.008G073800 [exp] 807 / 0 AT5G05390 893 / 0.0 laccase 12 (.1) Potri.008G073700 [exp] 797 / 0 AT2G40370 946 / 0.0 laccase 5 (.1) Potri.010G183600 [exp] 796 / 0 AT2G40370 937 / 0.0 laccase 5 (.1) Potri.013G152700 [exp] 646 / 0 AT2G30210 916 / 0.0 laccase 3 (.1) Potri.019G124300 [exp] 629 / 0 AT2G30210 845 / 0.0 laccase 3 (.1) Potri.006G094100 [exp] 525 / 0 AT3G09220 691 / 0.0 laccase 7 (.1) Potri.004G156400 [exp] 514 / 3e-179 AT5G03260 877 / 0.0 laccase 11 (.1) Potri.006G097000 [exp] 514 / 4e-179 AT2G38080 914 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.006G097100 [exp] 511 / 5e-178 AT2G38080 896 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07732 [flax] [poplar] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10007532 pacid=23176491 polypeptide=Lus10007532 locus=Lus10007532.g ID=Lus10007532.BGIv1.0 annot-version=v1.0 ATGAGGACCGGGTGGGCGGATGGGCCTGAGTTTGTGACCCAGTGCCCTATCCGTCCTGGAGGCAGCTACACTTACCGGTTTACTGTCCGTGGTCAGGAAG GGACTCTCTGGTGGCACGCTCATAGCTCTTGGCTCAGAGCCACTGTCTATGGAGCTTTGCTCATCCAGCCTAGAAATGGGACCGAGTTCCCTTTTCCTAA ACCCGCCCGTCAATCCACTCTTATGCTAGGGGAATGGTGGAATGCAAATCCGATTGATGTTCAAAGAGAATCGATCCGAACCGGTGGGGCTCCAAACATT TCAGATGCTTATACTATCAACGGCCAACCAGGAGATCTCTACAATTGTTCTAACCAAGACACCACCATCGTCCCGATCGCCACAGGCGAGACCAACCTCC TCCGAATCATCAACGCTGCAATGAACCAACCGCTCTTCCTCACAATCGCCAACCACAAATTCACCGTAGTCGGCGCAGACGCCTCCTACGTCAAACCCTT CACAACATCCGTCCTGATGCTCGGCCCCGGCCAAACCACCGACGTCCTCATCACCGGCGACCAACCCCCCAACCGCTACTACATCGCCGCCCGCGCCTAC CAAAGCGCCCAAAACGCCCCCTTCGACAACACCACCACCACCGCAATCCTCCAGTACAAATCCGCCCCATGCTCCGGCGGATCAAAATCCTGCTCCGCCT CCAAACCAATTATGCCGCAACTCCCTGCCTTCAACGACACGCAAACCGTCACCAAGTTCAGCACCAGCTTCAGAAGCCGAGAAAAGGCGCTGGTCCCAGC CGAAATTGACGAGAGTATGCTGATAACGGTCGGATTAGGATTAAACCCCTGCCCGCCGAATTTCAACGCCAGTCAACGCTGCCAGGCGCCCAACGGGACC AGATTCACGGCGAGCATGAACAACGTTTCTTTCGTGCTCCCGTCGAATTTTTCCCTGTTGCAGGCTCATAAACAGGGGATACAGGGCGTTTTCACCTCCG ACTTTCCGGCAATTCCGCCCATGGCTTTCGACTATACGGGGAATGTGAGCAGGGCGTTGTGGCGGCCGATGAACGGTACGAGGCTGTACAGGTTGAAATA CGGAGACAGAGTTCAGATTGTGCTTCAGGATACTAGCATTGTGACTCCCGAGAATCATCCGATTCATCTCCATGGATATGATTTCTATATCGTTGCTGAA GGGTTTGGGAATTTCAATCCCAAGACTGATACTTCCAAATTCAACCTTGTTGATCCGCCTCTCAGGAATACTGCTTCTGTTCCGGTGAACGGATGGTCTG TCATCCGATTCGTCGCCGATAATCCAGGGGTGTGGCTGATGCATTGTCATTTGGATGTGCACATTGGGTGGGGATTGGCCACAGCATTCCTGGTGGAGGA TGGAGTTGGGAAATTGGAAGCCATTGAGCCTCCTCCTGAAGATCTTCCCATCTGTTGA
AA sequence Show only first row Show all	>Lus10007532 pacid=23176491 polypeptide=Lus10007532 locus=Lus10007532.g ID=Lus10007532.BGIv1.0 annot-version=v1.0 MRTGWADGPEFVTQCPIRPGGSYTYRFTVRGQEGTLWWHAHSSWLRATVYGALLIQPRNGTEFPFPKPARQSTLMLGEWWNANPIDVQRESIRTGGAPNI SDAYTINGQPGDLYNCSNQDTTIVPIATGETNLLRIINAAMNQPLFLTIANHKFTVVGADASYVKPFTTSVLMLGPGQTTDVLITGDQPPNRYYIAARAY QSAQNAPFDNTTTTAILQYKSAPCSGGSKSCSASKPIMPQLPAFNDTQTVTKFSTSFRSREKALVPAEIDESMLITVGLGLNPCPPNFNASQRCQAPNGT RFTASMNNVSFVLPSNFSLLQAHKQGIQGVFTSDFPAIPPMAFDYTGNVSRALWRPMNGTRLYRLKYGDRVQIVLQDTSIVTPENHPIHLHGYDFYIVAE GFGNFNPKTDTSKFNLVDPPLRNTASVPVNGWSVIRFVADNPGVWLMHCHLDVHIGWGLATAFLVEDGVGKLEAIEPPPEDLPIC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40370		LAC5	laccase 5 (.1)		Lus10007532 [exp]	0	1
AT4G38260			Protein of unknown function (D...		Lus10016023 [exp]	3.6	0.9664
AT5G13660			unknown protein		Lus10005963 [exp]	5.1	0.9661
AT2G43330		ATINT1	inositol transporter 1 (.1)		Lus10043120 [exp]	6.0	0.8540
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10030409 [exp]	6.2	0.9661
AT5G42180		PER64	peroxidase 64, Peroxidase supe...		Lus10017288 [exp]	6.2	0.9317
AT4G17920			RING/U-box superfamily protein...		Lus10004572 [exp]	7.1	0.8178
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Lus10000481 [exp]	7.2	0.9661
AT5G27380		GSHB, GSH2	glutathione synthetase 2 (.1)		Lus10029976 [exp]	8.1	0.7732
AT5G20260			Exostosin family protein (.1)		Lus10039981 [exp]	8.1	0.9661
AT3G14920			Peptide-N4-(N-acetyl-beta-gluc...		Lus10025771 [exp]	8.7	0.9117

Compare expression of checked genes

Lus10007532 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.