Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17675 87 / 3e-20 Cupredoxin superfamily protein (.1) AT2G31050 89 / 4e-20 Cupredoxin superfamily protein (.1) AT2G26720 88 / 1e-19 Cupredoxin superfamily protein (.1) AT5G07475 87 / 2e-19 Cupredoxin superfamily protein (.1) AT5G26330 82 / 7e-18 Cupredoxin superfamily protein (.1) AT2G32300 83 / 2e-17 UCC1 uclacyanin 1 (.1) AT1G17800 72 / 1e-14 AtENODL22 early nodulin-like protein 22 (.1) AT2G25060 72 / 2e-14 AtENODL14 early nodulin-like protein 14 (.1) AT3G60270 72 / 2e-14 Cupredoxin superfamily protein (.1) AT4G31840 72 / 3e-14 AtENODL15 early nodulin-like protein 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012164 [exp] 748 / 0 AT2G16900 122 / 1e-30 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1), Arabidopsis phospholipase-like protein (PEARLI 4) family (.2), Arabidopsis phospholipase-like protein (PEARLI 4) family (.3) Lus10012165 [exp] 307 / 2e-101 AT5G07475 89 / 1e-22 Cupredoxin superfamily protein (.1) Lus10026277 [exp] 157 / 2e-41 AT4G35110 187 / 6e-55 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1), Arabidopsis phospholipase-like protein (PEARLI 4) family (.2), Arabidopsis phospholipase-like protein (PEARLI 4) family (.3), Arabidopsis phospholipase-like protein (PEARLI 4) family (.4) Lus10042396 [exp] 142 / 1e-36 AT4G35110 190 / 6e-56 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1), Arabidopsis phospholipase-like protein (PEARLI 4) family (.2), Arabidopsis phospholipase-like protein (PEARLI 4) family (.3), Arabidopsis phospholipase-like protein (PEARLI 4) family (.4) Lus10012085 [exp] 99 / 1e-23 AT5G07475 142 / 4e-43 Cupredoxin superfamily protein (.1) Lus10010533 [exp] 90 / 2e-20 AT5G26330 174 / 1e-55 Cupredoxin superfamily protein (.1) Lus10041849 [exp] 88 / 2e-20 AT2G02850 130 / 5e-40 plantacyanin (.1) Lus10041850 [exp] 83 / 1e-18 AT2G02850 121 / 1e-36 plantacyanin (.1) Lus10007026 [exp] 84 / 2e-18 AT2G32300 96 / 4e-25 uclacyanin 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G136200 [exp] 144 / 8e-40 AT5G26330 88 / 4e-22 Cupredoxin superfamily protein (.1) Potri.004G176100 [exp] 106 / 8e-24 AT2G16900 154 / 3e-42 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1), Arabidopsis phospholipase-like protein (PEARLI 4) family (.2), Arabidopsis phospholipase-like protein (PEARLI 4) family (.3) Potri.009G136400 [exp] 97 / 8e-21 AT2G16900 132 / 7e-35 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1), Arabidopsis phospholipase-like protein (PEARLI 4) family (.2), Arabidopsis phospholipase-like protein (PEARLI 4) family (.3) Potri.001G080700 [exp] 90 / 2e-20 AT5G07475 164 / 1e-51 Cupredoxin superfamily protein (.1) Potri.003G047300 [exp] 90 / 3e-20 AT5G26330 121 / 2e-34 Cupredoxin superfamily protein (.1) Potri.003G150300 [exp] 89 / 4e-20 AT5G07475 178 / 2e-57 Cupredoxin superfamily protein (.1) Potri.010G089900 [exp] 89 / 4e-20 AT5G26330 187 / 7e-61 Cupredoxin superfamily protein (.1) Potri.006G259000 [exp] 87 / 8e-20 AT5G26330 144 / 6e-44 Cupredoxin superfamily protein (.1) Potri.006G259101 [exp] 87 / 1e-19 AT5G26330 142 / 2e-43 Cupredoxin superfamily protein (.1) Potri.003G183300 [exp] 87 / 2e-19 AT5G15350 123 / 1e-35 early nodulin-like protein 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05278 [flax] [poplar] PEARLI-4 Arabidopsis phospholipase-like protein (PEARLI 4) CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10007582 pacid=23148076 polypeptide=Lus10007582 locus=Lus10007582.g ID=Lus10007582.BGIv1.0 annot-version=v1.0 ATGGCGATCAATTACAGCTTGTTTCTGATTTCCCTTTTGGTTGCGGTCACCATCAATGGCGTCGTGTTCAGCGCTTGCGGTGAAGTGTTCACAGTCGGTG ATGAAAGTGGTTGGAATATGCAGGTCAACTACGGGTCCTGGTCGGAGAAGCACAACTTCACCGTCGGCGACATACTCGAGTTCAAGTACTCGAAATCGGA GCACAACGTGTACGAGGTGACGAGGGAAGTGTTTCAAACTTGCAACACAAGCCTCGGAGACGTAATGGCCAAGTACCAAACTGGGAATGATCAAATCGAG CTTAGAGAGGGCAAGAAGTATTGGTTCATTTGCGAAATTGATGGCCATTGCCTTGGTGGGATGAGATTAGCTATTGGAGTTGAGAACCAGACTGTCGCCG CCGCTGCCGGCAACGACGAAAGTGGCAGCCGCGACGCTTCTTCCGGTTACAAGGATGTGTACAACTTTGAGAGATGTTGTACCTCTTTTGTCCACTTGTA CGAGGTTGTGAGAAGAGAGAAAGATCAGAAGATGGCTATTAATGGAAGAGTTCATTCTGAGTGTGTTAATGCTGGTAATCCTTATCATGAGTGTGGAGTT ATTTGCTTGGAGAAGATCTCTCAGGGTGTCACTCGAAATCCTAACAAGAACAAGAAGACATCAGGTAGTCAGAGAGGTGTTAAAGAAGCTCACCAAGTGA GGAAGACTGATGCACAAGAAAGAAGAGCTGCAAACCCTAACTGTCCAAAATCTGCAAACCCTTTCCATGACTGTGACCAAAATTGCACTGGTTACACACA ACATACTGATGATGGAAACAACAACCTTCAAGACATTGATGAAGATCAACTTGCTGGATCTTTCATTCTCGGTGCACCGGTGAGCAAGATACGGAGAGAG ATCAAGGCTTTATCTCAGCCGAATTCGCCTCAAGGTTTGAAACCAGCAGCTTATAGTCTCGGTGTGGTTGCTTCGTCACCAAGATCACCATTGTCCAACA CAAACTCTAATAAGAAGTCGTCCGTGGCTTCAGACACCAGCAGCAGGTCCACCACCTGGTCGACGTCCCATCAGCATTTCGACGGAAGGGGCTCTCGAAA TCATTCTCTCGAATCAGTTCCTTCGATGATCACAGAAGTAACCAAGAATGCTTCTTATTCAACAAAGTCTTCAGCTTTATCCAACACAAACCCTAATAAC AAGTCTGTAGATTCAGACACTCATCAGAAATTTGAAGAAATTCATTCTCGAAATCTGTCTCGCGAATCTGCAATGATTGTGGAAGTAATCAATAATGCTT CTTCTTCACCAAAGTCTACATCTTTACCACATCAGCAATTCGACCAAATTCGTTCTCGAAACCAGTCTCTTGAATTGGCTCCTTCTTCTCATATGATCAT GGAAGTAACCAACAATGCTTCTTCACAAAACTTTGATTTCACAATACCAGTTGGGAGATACCACGTCAAGTCAGCCATTGCTCCAACCCTATCCTCGATC CTCGAAAAGTACGGAGATGTAGCCGAAAACTGCAACCTCGAATCAACCTCCGTGGTTTCCCACACACTAGAATGCCTCTGTTACCTTCTCAAGGAGCTAC TGCAGTCCCCTTTCAAATCGAAATCGAAATCCAAGGAACTGCTGGCAGTCTTCAAGGACCTCAAATCAGCAGGGATCCACACGAGCTGGCTTCGAGACGA GGTGAAAATCGTCAACAGTCAGAGACAATCTGAGTGTGATCTTGCTATTGAGTTGGTGAAGAGGGAGCTTGAGCCCCTGATGGAGGATCTGGCTGCTAAA GAGGAGGCTGTTGCAGAAGTTGCAGCGAAAGTCGAAAAGTTGAAGGTTGGTTTAGAACAGTTGGAAGGTGAATCCTTGAGGATCAAGGAATCTGCTTCTT ATAGTTGGTTGTTGATTGAGAAGTTTCATGGCTCCAAATCTTTGGGAGATGGTGTCTTGTGA
AA sequence Show only first row Show all	>Lus10007582 pacid=23148076 polypeptide=Lus10007582 locus=Lus10007582.g ID=Lus10007582.BGIv1.0 annot-version=v1.0 MAINYSLFLISLLVAVTINGVVFSACGEVFTVGDESGWNMQVNYGSWSEKHNFTVGDILEFKYSKSEHNVYEVTREVFQTCNTSLGDVMAKYQTGNDQIE LREGKKYWFICEIDGHCLGGMRLAIGVENQTVAAAAGNDESGSRDASSGYKDVYNFERCCTSFVHLYEVVRREKDQKMAINGRVHSECVNAGNPYHECGV ICLEKISQGVTRNPNKNKKTSGSQRGVKEAHQVRKTDAQERRAANPNCPKSANPFHDCDQNCTGYTQHTDDGNNNLQDIDEDQLAGSFILGAPVSKIRRE IKALSQPNSPQGLKPAAYSLGVVASSPRSPLSNTNSNKKSSVASDTSSRSTTWSTSHQHFDGRGSRNHSLESVPSMITEVTKNASYSTKSSALSNTNPNN KSVDSDTHQKFEEIHSRNLSRESAMIVEVINNASSSPKSTSLPHQQFDQIRSRNQSLELAPSSHMIMEVTNNASSQNFDFTIPVGRYHVKSAIAPTLSSI LEKYGDVAENCNLESTSVVSHTLECLCYLLKELLQSPFKSKSKSKELLAVFKDLKSAGIHTSWLRDEVKIVNSQRQSECDLAIELVKRELEPLMEDLAAK EEAVAEVAAKVEKLKVGLEQLEGESLRIKESASYSWLLIEKFHGSKSLGDGVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35110			Arabidopsis phospholipase-like...		Lus10007582 [exp]	0	1
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Lus10019832 [exp]	5.7	0.9659
AT2G23770			protein kinase family protein ...		Lus10000577 [exp]	11.0	0.9595
AT1G01490			Heavy metal transport/detoxifi...		Lus10039286 [exp]	13.3	0.9311
AT5G02790		GSTL3	Glutathione transferase L3, Gl...		Lus10015049 [exp]	18.2	0.9580
AT5G56260			Ribonuclease E inhibitor RraA/...		Lus10032885 [exp]	18.7	0.9564
AT5G53560		B5#2, ATB5-A, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10022357 [exp]	19.0	0.9359
AT4G14710		ATARD2	RmlC-like cupins superfamily p...		Lus10006617 [exp]	19.2	0.9381
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Lus10009988 [exp]	28.1	0.9550
AT3G21760		HYR1	HYPOSTATIN RESISTANCE 1, UDP-G...		Lus10036086 [exp]	31.5	0.9492
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10035241 [exp]	31.9	0.9469

Compare expression of checked genes

Lus10007582 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.