Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31830 679 / 0 Amino acid permease family protein (.1.2) AT5G05630 641 / 0 Amino acid permease family protein (.1) AT1G31820 592 / 0 Amino acid permease family protein (.1) AT3G19553 483 / 2e-164 Amino acid permease family protein (.1) AT3G13620 358 / 4e-116 Amino acid permease family protein (.1) AT4G19100 174 / 6e-50 PAM68 photosynthesis affected mutant 68, Protein of unknown function (DUF3464) (.1) AT5G52780 70 / 8e-14 Protein of unknown function (DUF3464) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012153 [exp] 877 / 0 AT1G31830 744 / 0.0 Amino acid permease family protein (.1.2) Lus10003232 [exp] 606 / 0 AT1G31830 687 / 0.0 Amino acid permease family protein (.1.2) Lus10040966 [exp] 494 / 8e-169 AT3G19553 694 / 0.0 Amino acid permease family protein (.1) Lus10009849 [exp] 494 / 1e-168 AT3G19553 693 / 0.0 Amino acid permease family protein (.1) Lus10039180 [exp] 362 / 2e-117 AT3G13620 711 / 0.0 Amino acid permease family protein (.1) Lus10034046 [exp] 335 / 4e-107 AT3G13620 641 / 0.0 Amino acid permease family protein (.1) Lus10010512 [exp] 332 / 9e-106 AT3G13620 643 / 0.0 Amino acid permease family protein (.1) Lus10012152 [exp] 267 / 6e-85 AT4G19100 190 / 4e-61 photosynthesis affected mutant 68, Protein of unknown function (DUF3464) (.1) Lus10038849 [exp] 75 / 1e-14 AT5G52780 131 / 2e-38 Protein of unknown function (DUF3464) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G103600 [exp] 710 / 0 AT1G31830 694 / 0.0 Amino acid permease family protein (.1.2) Potri.004G178000 [exp] 652 / 0 AT1G31830 637 / 0.0 Amino acid permease family protein (.1.2) Potri.001G296100 [exp] 495 / 7e-169 AT3G19553 678 / 0.0 Amino acid permease family protein (.1) Potri.009G090300 [exp] 468 / 4e-158 AT3G19553 673 / 0.0 Amino acid permease family protein (.1) Potri.001G007300 [exp] 381 / 5e-125 AT3G13620 675 / 0.0 Amino acid permease family protein (.1) Potri.001G007200 [exp] 379 / 3e-124 AT3G13620 567 / 0.0 Amino acid permease family protein (.1) Potri.001G132001 [exp] 163 / 6e-46 AT4G19100 153 / 2e-46 photosynthesis affected mutant 68, Protein of unknown function (DUF3464) (.1) Potri.004G072900 [exp] 59 / 9e-10 AT5G52780 101 / 2e-27 Protein of unknown function (DUF3464) (.1) Potri.019G039700 [exp] 44 / 0.0003 AT1G58030 924 / 0.0 cationic amino acid transporter 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11947 [flax] [poplar] DUF3464 Photosynthesis affected mutant 68 CL0062 [flax] [poplar] APC PF00324 [flax] [poplar] AA_permease Amino acid permease
Representative CDS sequence Show only first row Show all	>Lus10007593 pacid=23148082 polypeptide=Lus10007593 locus=Lus10007593.g ID=Lus10007593.BGIv1.0 annot-version=v1.0 ATGAAGTTACCCTCTTCTGCTTCATCTTATTCGTTGCCATCATCAGCTACGTTGCCGCCAGTAACTTCCAAGACTTTTCCCCAAAGTTGTGAAGTTCCAG CCACAATCAGATTCCCCATTACAGCACCAAACACTTGTTCCTTCACACCATCCACTTCAGCTTCAGTTCTATTACTACATGCAACCAACAACCCAAGAGG GTTCGGGAAACCCCTCAAGAAACCCAAAAAGGGGAAGAAGACACTAACCTACAATGACGAGGAGGATGATAATTATGTCGAAGAAGAATCTAGACGAGAT GCAGGGGTGATCCCCGAGGTGGTGACGAACAGGATGATAAGCAGGATGGGGTTCTCAGTAGGGATCCCATTGTTCACAGGGTTAATGTTCTTCCCATTCT TTTACTACCTAAAAGTCGTGCAGAAGATCGATGTCCCGAACTGGGTTCCTTTCATCGTGTCGTCCGTCTTCTTCGGGACGGCCTTGTTGGGTGTGAGCTA CGGGATCGTGTCCTCCAGTTGGGATCCCTTGAGGGAAGGGTCTCTTCTGGGTTGGACTGAAGCTCAGAGGAATTGGCCTGTGTTTTGGGGCTCTATCTGG GGTGGTGGTAGTAGTTCTGATAAGAAGTTAAGAGCTCTCTCGATCTCAAAACTTCTGCCTGCCAGCCTCCGATCGGCAGAGATGGTGGCGGAAGTTTCCG GCGATGGTATTGCTCCGGCGGCTATGGTTCAACTGGCGGAGGTTGGTGGCGGTGATGATCGTCAAGAGAAACTGAGGAAGCAGACCTCAATCCCGATGAC AGAGTACAGCTCAGTCGATTTCGTCCCCATTGACGAAGCTTCTTCACCTTCTAGGGTTAGCACAAGCCACCCAACCAAGAACAAGGTATCAGTCATCCCT TTGATTTTCCTCATCTTCTACGAGGTATCCGGAGGTCCATTCGGAGTCGAGGACAGTGTCCAAGCAGCTGGTCCTTTACTTGCTTTATTGGGGTTCTTAG TGTTCCCATTGATATGGAGTGTCCCCGAAGCACTAATCACAGCAGAAATGGGAACGATGTTCCCTGAAAACGGAGGCTACGTCGTCTGGGTTTCCTCTGC TTTAGGCCCCTTTTGGGGGTTTCAGCAAGGCTGGATGAAATGGCTGAGTGGTGTTATCGACAATGCGCTCTATCCAGTGCTGTTCCTTGATTATCTCAAA TCTGGAATCCCGGCTTTAGGTGGAGGGTTGCCGAGGACTTTGGCTGCATTGATCTTGACGTTTATGCTTACTTACATGAACTATAGAGGGCTGATCATTG TAGGCTGGGCTGCTGTATTGTTAGGGATCTTCTCGATCATGCCTTTTGTTGTTATGGGGCTCGTTTCGATCCCCAAGCTAGAGCCTTCTCGGTGGCTAGT GATGGATTTGCATGATGTTAATTGGAATCTATTTCTCAATACTCTCTTCTGGAACTTGAACTATTGGGATTCCATCAGTACCTTGTCTGGGGAGGTGGAG AATCCTAAGAAGACTTTACCGATGGCGCTGTTCTATGCTTTGATCTTCGTCGTGTTTGGCTATTTCTTCCCGCTTTTGATTGGTACCGGCGCTGTACCGC TCGATCGCGACCTCTGGACCGATGGCTACTTCTCGGATATCGCGAAGCTGGTTGGTGGCGTTTGGCTGAGGTGGTGGATACAAGGTGCGGCTGCATTGTC CAACATGGGGATGTTCATGGCTGAAATGAGCTCCGACTCGTTCCAGCTACTGGGCATGGCCGAACGAGGCATGCTGCCCGAGTTGTTTGCGAAACGGTCC AAGTATGGTACGCCGCTAATCGGGATCCTCTTCTCAGCCTCCGGGGTGATCCTCCTTTCGTGGCTGAGCTTTCAGGAGATAGTTGCGGCCGAGAATTTTC TGTACTGTTTCGGGATGATACTCGAGTTCATCGCGTTCATAAGGCTGCGAATGAAGTACCCAGCTGCATCAAGGCCGTACCGAATCCCGTTGGGGACGAT AGGGTCCGTACTAATGTGCGTCCCTCCTACGATACTGATCTGCATCGTGCTTGCCCTCTCGACGCTGAAGGTCATGCTCGTGAGCCTCGGTGCCCTGGCG ATTGGGCTCGTGATGCACCCGTTCCTAGTATATGCCGAGAAGAAGAAGTGGATGAAGTTCTCCGTAAGTGCTGAGCTCCCGGATCTTGATGGCGTTGGAC GAGAAGCTAGCGAGTCTTTGGTTCGGTGA
AA sequence Show only first row Show all	>Lus10007593 pacid=23148082 polypeptide=Lus10007593 locus=Lus10007593.g ID=Lus10007593.BGIv1.0 annot-version=v1.0 MKLPSSASSYSLPSSATLPPVTSKTFPQSCEVPATIRFPITAPNTCSFTPSTSASVLLLHATNNPRGFGKPLKKPKKGKKTLTYNDEEDDNYVEEESRRD AGVIPEVVTNRMISRMGFSVGIPLFTGLMFFPFFYYLKVVQKIDVPNWVPFIVSSVFFGTALLGVSYGIVSSSWDPLREGSLLGWTEAQRNWPVFWGSIW GGGSSSDKKLRALSISKLLPASLRSAEMVAEVSGDGIAPAAMVQLAEVGGGDDRQEKLRKQTSIPMTEYSSVDFVPIDEASSPSRVSTSHPTKNKVSVIP LIFLIFYEVSGGPFGVEDSVQAAGPLLALLGFLVFPLIWSVPEALITAEMGTMFPENGGYVVWVSSALGPFWGFQQGWMKWLSGVIDNALYPVLFLDYLK SGIPALGGGLPRTLAALILTFMLTYMNYRGLIIVGWAAVLLGIFSIMPFVVMGLVSIPKLEPSRWLVMDLHDVNWNLFLNTLFWNLNYWDSISTLSGEVE NPKKTLPMALFYALIFVVFGYFFPLLIGTGAVPLDRDLWTDGYFSDIAKLVGGVWLRWWIQGAAALSNMGMFMAEMSSDSFQLLGMAERGMLPELFAKRS KYGTPLIGILFSASGVILLSWLSFQEIVAAENFLYCFGMILEFIAFIRLRMKYPAASRPYRIPLGTIGSVLMCVPPTILICIVLALSTLKVMLVSLGALA IGLVMHPFLVYAEKKKWMKFSVSAELPDLDGVGREASESLVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31830			Amino acid permease family pro...		Lus10007593 [exp]	0	1
AT2G32070			Polynucleotidyl transferase, r...		Lus10003635 [exp]	1.0	0.9285
AT5G01650			Tautomerase/MIF superfamily pr...		Lus10022681 [exp]	1.4	0.8729
AT5G27930			Protein phosphatase 2C family ...		Lus10029874 [exp]	3.2	0.8438
AT5G67220			FMN-linked oxidoreductases sup...		Lus10006260 [exp]	4.2	0.8418
AT2G32070			Polynucleotidyl transferase, r...		Lus10036291 [exp]	4.7	0.8243
AT1G26761			Arabinanase/levansucrase/inver...		Lus10037153 [exp]	4.9	0.8666
AT1G47820			unknown protein		Lus10031924 [exp]	7.7	0.8290
AT2G43770			Transducin/WD40 repeat-like su...		Lus10002211 [exp]	8.2	0.8146
AT1G01970			Tetratricopeptide repeat (TPR)...		Lus10009299 [exp]	10.4	0.8116
AT3G10110		MEE67	maternal effect embryo arrest ...		Lus10020223 [exp]	10.4	0.7952

Compare expression of checked genes

Lus10007593 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.