Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46410 66 / 7e-16 MYB CPC CAPRICE, Homeodomain-like superfamily protein (.1) AT1G01380 64 / 3e-15 MYB ETC1 ENHANCER OF TRY AND CPC 1, Homeodomain-like superfamily protein (.1) AT4G01060 62 / 1e-14 MYB CPL3, ETC3 ENHANCER OF TRY AND CPC 3, CAPRICE-like MYB3 (.1.2.3) AT1G66370 62 / 3e-13 MYB ATMYB113 myb domain protein 113 (.1) AT5G35550 61 / 8e-13 MYB ATTT2, TT2, AtMYB123 TRANSPARENT TESTA 2, MYB DOMAIN PROTEIN 123, Duplicated homeodomain-like superfamily protein (.1) AT5G53200 58 / 1e-12 MYB TRY TRIPTYCHON, Homeodomain-like superfamily protein (.1) AT2G30424 57 / 2e-12 MYB TCL2 TRICHOMELESS 2, Homeodomain-like superfamily protein (.1) AT3G13540 60 / 3e-12 MYB ATMYB5, ATM2 myb domain protein 5 (.1) AT4G09460 59 / 6e-12 MYB ATMYB6, ATMYB8 myb domain protein 6 (.1) AT5G52600 57 / 1e-11 MYB AtMYB82 myb domain protein 82 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018366 [exp] 152 / 2e-49 AT2G46410 67 / 2e-15 CAPRICE, Homeodomain-like superfamily protein (.1) Lus10018414 [exp] 117 / 1e-32 AT4G05120 548 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10042522 [exp] 66 / 2e-14 AT1G66370 181 / 7e-57 myb domain protein 113 (.1) Lus10001043 [exp] 65 / 2e-14 AT1G22640 119 / 1e-33 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) Lus10014933 [exp] 61 / 6e-14 AT2G46410 96 / 1e-27 CAPRICE, Homeodomain-like superfamily protein (.1) Lus10038822 [exp] 61 / 8e-14 AT5G53200 96 / 1e-27 TRIPTYCHON, Homeodomain-like superfamily protein (.1) Lus10009130 [exp] 64 / 1e-13 AT1G66370 202 / 3e-64 myb domain protein 113 (.1) Lus10028513 [exp] 63 / 4e-13 AT1G66370 205 / 3e-65 myb domain protein 113 (.1) Lus10028514 [exp] 62 / 6e-13 AT1G66370 179 / 1e-55 myb domain protein 113 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G026300 [exp] 86 / 1e-23 AT1G01380 68 / 9e-17 ENHANCER OF TRY AND CPC 1, Homeodomain-like superfamily protein (.1) Potri.004G021300 [exp] 85 / 2e-23 AT1G01380 67 / 1e-16 ENHANCER OF TRY AND CPC 1, Homeodomain-like superfamily protein (.1) Potri.007G122800 [exp] 80 / 2e-21 AT2G46410 69 / 3e-17 CAPRICE, Homeodomain-like superfamily protein (.1) Potri.017G037000 [exp] 79 / 6e-21 AT2G46410 69 / 4e-17 CAPRICE, Homeodomain-like superfamily protein (.1) Potri.004G015100 [exp] 74 / 3e-19 AT2G46410 71 / 1e-17 CAPRICE, Homeodomain-like superfamily protein (.1) Potri.017G125700 [exp] 65 / 3e-14 AT1G66370 202 / 1e-64 myb domain protein 113 (.1) Potri.006G221500 [exp] 64 / 7e-14 AT5G35550 174 / 2e-53 TRANSPARENT TESTA 2, MYB DOMAIN PROTEIN 123, Duplicated homeodomain-like superfamily protein (.1) Potri.002G168900 [exp] 61 / 9e-14 AT5G53200 122 / 2e-37 TRIPTYCHON, Homeodomain-like superfamily protein (.1) Potri.006G066400 [exp] 63 / 1e-13 AT5G52600 193 / 3e-62 myb domain protein 82 (.1) Potri.014G096300 [exp] 61 / 1e-13 AT2G46410 114 / 1e-34 CAPRICE, Homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10007643 pacid=23140281 polypeptide=Lus10007643 locus=Lus10007643.g ID=Lus10007643.BGIv1.0 annot-version=v1.0 ATGGATGACTCTTCCTGCAGGCATTCTTCTCATAGTGGCGAATTCGGGTCACCGCAGAAGGAGGTTAAGTTCTCGGGTGATGAGGAGTCGCTGGTGATCA GGATGTATAATCTTGTTGGAGAAAGGTGGCATTTGATCGCTGGAAGGATTCCGGGAAGAACAGCTCGGGATGTCGAGAAGTACTGGAATTCGAAACGCAA TGCGAGTGAAGAAGATACTCCTCCGCAGGCGAACAAAACATGA
AA sequence Show only first row Show all	>Lus10007643 pacid=23140281 polypeptide=Lus10007643 locus=Lus10007643.g ID=Lus10007643.BGIv1.0 annot-version=v1.0 MDDSSCRHSSHSGEFGSPQKEVKFSGDEESLVIRMYNLVGERWHLIAGRIPGRTARDVEKYWNSKRNASEEDTPPQANKT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46410	MYB	CPC	CAPRICE, Homeodomain-like supe...		Lus10007643 [exp]	0	1
					Lus10034724 [exp]	1.0	0.8821
AT3G25810			Terpenoid cyclases/Protein pre...		Lus10031352 [exp]	2.0	0.8806
					Lus10007681 [exp]	6.0	0.7574
AT5G59950			RNA-binding (RRM/RBD/RNP motif...		Lus10023417 [exp]	11.6	0.8179
AT5G65280		GCL1	GCR2-like 1 (.1)		Lus10025736 [exp]	13.2	0.7868
AT1G79800		AtENODL7	early nodulin-like protein 7 (...		Lus10018758 [exp]	16.9	0.8101
AT3G22640		PAP85	cupin family protein (.1)		Lus10042615 [exp]	19.3	0.7951
AT2G23570		ATMES19	ARABIDOPSIS THALIANA METHYL ES...		Lus10020004 [exp]	25.1	0.7859
AT1G75680		ATGH9B7	glycosyl hydrolase 9B7 (.1)		Lus10014265 [exp]	27.5	0.7289
AT5G56950		NFA3, NFA03, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10001231 [exp]	30.0	0.7235

Compare expression of checked genes

Lus10007643 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.