Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61800 543 / 0 ATGPT2, GPT2 ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, glucose-6-phosphate/phosphate translocator 2 (.1) AT5G54800 514 / 0 ATGPT1, GPT1 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) AT5G17630 308 / 3e-102 Nucleotide/sugar transporter family protein (.1) AT4G03950 257 / 5e-84 Nucleotide/sugar transporter family protein (.1) AT5G46110 225 / 7e-70 TPT, APE2 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) AT3G01550 196 / 4e-59 ATPPT2 phosphoenolpyruvate (pep)/phosphate translocator 2 (.1) AT5G33320 196 / 1e-58 ARAPPT, CUE1 PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR, CAB UNDEREXPRESSED 1, ARABIDOPSIS THALIANA PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR, Glucose-6-phosphate/phosphate translocator-related (.1) AT1G77610 90 / 5e-20 EamA-like transporter family protein (.1) AT1G21870 89 / 2e-19 GONST5 golgi nucleotide sugar transporter 5 (.1) AT1G12500 72 / 1e-13 Nucleotide-sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018356 [exp] 687 / 0 AT1G61800 557 / 0.0 ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, glucose-6-phosphate/phosphate translocator 2 (.1) Lus10011155 [exp] 527 / 0 AT5G54800 581 / 0.0 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) Lus10043060 [exp] 523 / 0 AT5G54800 580 / 0.0 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) Lus10019209 [exp] 290 / 3e-95 AT5G17630 480 / 2e-169 Nucleotide/sugar transporter family protein (.1) Lus10004312 [exp] 286 / 1e-93 AT5G17630 484 / 4e-171 Nucleotide/sugar transporter family protein (.1) Lus10037085 [exp] 231 / 2e-72 AT5G46110 530 / 0.0 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Lus10015399 [exp] 229 / 1e-71 AT5G46110 642 / 0.0 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Lus10013978 [exp] 229 / 3e-71 AT5G46110 641 / 0.0 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Lus10013083 [exp] 212 / 7e-65 AT3G01550 429 / 1e-149 phosphoenolpyruvate (pep)/phosphate translocator 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G019900 [exp] 544 / 0 AT1G61800 592 / 0.0 ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, glucose-6-phosphate/phosphate translocator 2 (.1) Potri.001G420200 [exp] 530 / 0 AT5G54800 563 / 0.0 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) Potri.011G135900 [exp] 527 / 0 AT5G54800 583 / 0.0 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) Potri.013G071900 [exp] 294 / 2e-96 AT5G17630 526 / 0.0 Nucleotide/sugar transporter family protein (.1) Potri.008G095200 [exp] 234 / 3e-73 AT5G46110 454 / 5e-159 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Potri.004G048900 [exp] 221 / 8e-70 AT5G46110 539 / 0.0 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Potri.011G057800 [exp] 224 / 2e-69 AT5G46110 627 / 0.0 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Potri.001G347300 [exp] 206 / 9e-63 AT3G01550 411 / 1e-142 phosphoenolpyruvate (pep)/phosphate translocator 2 (.1) Potri.015G077900 [exp] 201 / 2e-60 AT5G33320 517 / 0.0 PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR, CAB UNDEREXPRESSED 1, ARABIDOPSIS THALIANA PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR, Glucose-6-phosphate/phosphate translocator-related (.1) Potri.012G082100 [exp] 195 / 2e-58 AT5G33320 458 / 1e-160 PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR, CAB UNDEREXPRESSED 1, ARABIDOPSIS THALIANA PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR, Glucose-6-phosphate/phosphate translocator-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10007653 pacid=23140311 polypeptide=Lus10007653 locus=Lus10007653.g ID=Lus10007653.BGIv1.0 annot-version=v1.0 ATGACCACCACAATGTTCTCTTCCACTTCAATCAATCGAACTCATCACTCCATTTCCAAACTCCCCATCCCCAAATCTCATTTTCCTCCAACCATCTTCC ATTTCTCAAAAACCTCCATCCTCAAACCCCTCCACCTCTCCAATTCCACCGTCAACCGCACCACTATCCTCTGCAATGCCTACGAGGCCGACAGCCGGTC ACAACCGCTCGACATAACATTCGACGACCAGTCCGCTCAGAAGATCAAGATCGGAATCTACTTCGCCACGTGGTGGGCGCTCAACGTCGTCTTCAACATC TACAACAAGAAAGTACTGAACGCATTCCCTTACCCATGGCTAACTTCGCTTCTCTCCTTGGCATGTGGGTCCCTCATGATGCTCGTCTCATGGGCCACTA ACGTAGCCCCCGCGCCCGCCGTCGATTTTGAATTTTGGAAATCGTTATTCCCCGTCGCGGTGGCGCACACCATTGGACACGTGGCGGCGACTGTCAGCAT GTCGAAAGTGGCCGTCTCGTTCACTCATATAATCAAGAGCGGGGAGCCGGCTTTCAGTGTATTGGTGTCCAGGTTTCTGTTGGGAGAGAGTTTTCCGATT CCGGTTTACCTCTCTCTGTTGCCGATCATCGGAGGGTGCTCTCTGGCCGCCGTCACCGAACTCAATTTCAACCTCATCGGATTCATGGGGGCGATGATCT CGAACATGGCGTTCGTGTTCCGTAACATATTCTCGAAGAAAGGAATGAGCAGCGGCGGTGGGAATAAGAAGAACGCCGTCAGCGGGATGAACTACTACGC CTGCTTGTCGATCATGTCTCTGTTGATTCTGACGCCGTTCGCCGTCGCCGTGGAGGGACCTAAGATGTGGGCTGCCGGGTGGAGAGCCGCCGTGGCGGAA ATCGGTCCCAATTTCGTGTGGTGGGTGGCGGCGCAGAGCGTGTTCTACCACTTGTACAACCAGGTGTCGTACATGTCGCTGGATCAGATATCGCCGTTGA CGTTCAGCGTTGGTAACACCATGAAGAGGATATCGGTTATTGTTTCGTCGATCATTATATTCCACACGCCGATTCAGCCCGTGAATGCGCTCGGAGCCGC CATTGCTATCTTCGGCACGTTCATCTATTCGCAGGCAAAGCTGTGA
AA sequence Show only first row Show all	>Lus10007653 pacid=23140311 polypeptide=Lus10007653 locus=Lus10007653.g ID=Lus10007653.BGIv1.0 annot-version=v1.0 MTTTMFSSTSINRTHHSISKLPIPKSHFPPTIFHFSKTSILKPLHLSNSTVNRTTILCNAYEADSRSQPLDITFDDQSAQKIKIGIYFATWWALNVVFNI YNKKVLNAFPYPWLTSLLSLACGSLMMLVSWATNVAPAPAVDFEFWKSLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLLGESFPI PVYLSLLPIIGGCSLAAVTELNFNLIGFMGAMISNMAFVFRNIFSKKGMSSGGGNKKNAVSGMNYYACLSIMSLLILTPFAVAVEGPKMWAAGWRAAVAE IGPNFVWWVAAQSVFYHLYNQVSYMSLDQISPLTFSVGNTMKRISVIVSSIIIFHTPIQPVNALGAAIAIFGTFIYSQAKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61800		ATGPT2, GPT2	ARABIDOPSIS GLUCOSE-6-PHOSPHAT...		Lus10007653 [exp]	0	1
AT1G67330			Protein of unknown function (D...		Lus10037026 [exp]	2.0	0.9413
					Lus10042011 [exp]	2.2	0.9421
					Lus10036557 [exp]	2.4	0.9388
AT3G20898			unknown protein		Lus10014904 [exp]	2.8	0.9005
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10036556 [exp]	3.3	0.8921
AT5G06920		FLA21	FASCICLIN-like arabinogalactan...		Lus10019675 [exp]	4.0	0.9133
AT1G68620			alpha/beta-Hydrolases superfam...		Lus10041473 [exp]	5.5	0.9080
AT4G20860			FAD-binding Berberine family p...		Lus10038446 [exp]	8.0	0.8817
AT3G08640			Protein of unknown function (D...		Lus10035607 [exp]	9.2	0.9014
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10026362 [exp]	9.3	0.8492

Compare expression of checked genes

Lus10007653 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.