Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G30390 489 / 2e-171 Transmembrane amino acid transporter family protein (.1.2) AT5G38820 486 / 2e-170 Transmembrane amino acid transporter family protein (.1) AT2G40420 367 / 7e-124 Transmembrane amino acid transporter family protein (.1) AT3G56200 358 / 3e-120 Transmembrane amino acid transporter family protein (.1) AT1G80510 318 / 5e-104 Transmembrane amino acid transporter family protein (.1) AT4G38250 66 / 2e-11 Transmembrane amino acid transporter family protein (.1) AT2G42005 65 / 4e-11 Transmembrane amino acid transporter family protein (.1) AT1G10010 53 / 3e-07 AAP8, ATAAP8 amino acid permease 8 (.1) AT5G63850 50 / 3e-06 AAP4 amino acid permease 4 (.1) AT1G58360 48 / 1e-05 NAT2, AAP1 NEUTRAL AMINO ACID TRANSPORTER 2, amino acid permease 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018652 [exp] 845 / 0 AT5G38820 499 / 3e-175 Transmembrane amino acid transporter family protein (.1) Lus10031964 [exp] 528 / 0 AT3G30390 689 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10035140 [exp] 524 / 0 AT3G30390 691 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10034353 [exp] 523 / 0 AT3G30390 655 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10005099 [exp] 517 / 0 AT3G30390 646 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10036845 [exp] 452 / 3e-157 AT3G30390 561 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10042864 [exp] 394 / 2e-134 AT3G56200 534 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10028165 [exp] 387 / 2e-131 AT3G56200 541 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10034093 [exp] 351 / 1e-116 AT1G80510 658 / 0.0 Transmembrane amino acid transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G114300 [exp] 682 / 0 AT3G30390 516 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Potri.017G106300 [exp] 536 / 0 AT3G30390 625 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Potri.004G111400 [exp] 507 / 2e-178 AT3G30390 643 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Potri.010G181800 [exp] 392 / 3e-133 AT3G56200 511 / 3e-180 Transmembrane amino acid transporter family protein (.1) Potri.003G011900 [exp] 310 / 6e-101 AT1G80510 611 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.001G204400 [exp] 305 / 7e-99 AT1G80510 560 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.010G136601 [exp] 280 / 1e-91 AT3G30390 315 / 4e-105 Transmembrane amino acid transporter family protein (.1.2) Potri.008G075500 [exp] 71 / 3e-14 AT3G56200 101 / 6e-26 Transmembrane amino acid transporter family protein (.1) Potri.009G167900 [exp] 71 / 4e-13 AT4G38250 583 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.005G102300 [exp] 71 / 5e-13 AT4G38250 539 / 0.0 Transmembrane amino acid transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10007716 pacid=23149222 polypeptide=Lus10007716 locus=Lus10007716.g ID=Lus10007716.BGIv1.0 annot-version=v1.0 ATGCCGACCGGCGACCGCAAACACCGCCGGAGTTCCAAGGTTCCTCTTCTCCCTCATAAACGCGACGACCGCTTCCATCAAGTGGAGGCCAGCTCCGATG GCGCCTCCTTCTCCGGCGCAGTCTTCAACCTCTCCACCACAATCGTCGGAGCTGGAATCATGGCGCTTCCTGCTATCCTCAACCAATTGGGACTGATTCC TGGCCTTGTCATGATTCTGCTCGGCGCTTGGGTTACAGAGATGTCGATTGACTTGGTTTTGAGATTCGGTCGTGCTTCCAAGACAAGCACCTCATATTCC GGAGTCGTCGCCGATGCCTTCGGCGGTTTCGGCCGGACGCTTCTTCAGATCTGCATCGTCGTCAACAACCTTGGAATGCTCATCGTCTACTTGATTATCA TCGGCGATGTATTAGCTGGAACATGGTCAGAAGGGGTCCATCACTCAGGGCTGATAGATGAATGGCTTGGTGGTCACAGCAGCCATTGGTGGACAGCTCG TTCTACCTTGTTACTTCTCACCACTTTCCTTGTTTTGGGCCCGCTTATATCTTTCAAACGCGTTGATTCATTAAGATACACGTCCGCAGTGTCGGTGCTT TTGGCTATTGTATTCGTAGCAATCACGGCTGGAGTTGCAATTGTGAAGCTAGTTGAAGGAAGGATTGGAATGCCCCGTTTGATGCCCCAAGTGAATGATC AGGCGTCTTTCTGGAAACTTTTCACAACTGTGCCTGTGATAGTCACTGCTTATATCTGTCACCATAATGTTCACCCGATAGAGAATGAGCTAAAAGATTC AACTCAGATGAAGTCCATCGTTCGAGCATCCCTTAAGCTGTGCTCATGTGTCTATGTTGCTACCAGCTTCTTTGGAGTTCTTCTTTTTGGGGATGGGATA ATGGATGATGTGCTGGCCAATTTCGACGGTGATCTCGGAGTTCCATATAGCTCGTTGGTCGACGATGTGGTGAGGGTTAGCTACGGTGTCCATCTCATGC TCGTCTTCCCGATAGTGTTCTACTCCCTTCGCCTCAACTTGGATGGACTCCTCTTTCCCTATGCGGTTCCCATAGCACGAGACAACAAGAGGTTCTTCTC CATAACAGTAGCTCTCATGGGAGTAATCTTCGTGGGCGCAAATTTCGTGCCGAATATCTGGGATGCTTTCCAGTTCACCGGTGCCACATCCGCTGTTGCT GTTGGCTTCATCTTTCCAGCTGCTATTGCTCTTAGGAATTCTCATGGGATAGCGACAAAGAGAGACAAGGTAGCGGCCTGGCTAATGATAGTATTGGCGG TGGCGTCCAGCGTAGTGGCAATTTGTAGCGATGTTTACAGCATTTTCAGCCCAGATAGTGGACTTACTAGCTAA
AA sequence Show only first row Show all	>Lus10007716 pacid=23149222 polypeptide=Lus10007716 locus=Lus10007716.g ID=Lus10007716.BGIv1.0 annot-version=v1.0 MPTGDRKHRRSSKVPLLPHKRDDRFHQVEASSDGASFSGAVFNLSTTIVGAGIMALPAILNQLGLIPGLVMILLGAWVTEMSIDLVLRFGRASKTSTSYS GVVADAFGGFGRTLLQICIVVNNLGMLIVYLIIIGDVLAGTWSEGVHHSGLIDEWLGGHSSHWWTARSTLLLLTTFLVLGPLISFKRVDSLRYTSAVSVL LAIVFVAITAGVAIVKLVEGRIGMPRLMPQVNDQASFWKLFTTVPVIVTAYICHHNVHPIENELKDSTQMKSIVRASLKLCSCVYVATSFFGVLLFGDGI MDDVLANFDGDLGVPYSSLVDDVVRVSYGVHLMLVFPIVFYSLRLNLDGLLFPYAVPIARDNKRFFSITVALMGVIFVGANFVPNIWDAFQFTGATSAVA VGFIFPAAIALRNSHGIATKRDKVAAWLMIVLAVASSVVAICSDVYSIFSPDSGLTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G30390			Transmembrane amino acid trans...		Lus10007716 [exp]	0	1
AT4G05000		VPS28-2, VPS28-...	vacuolar protein sorting-assoc...		Lus10011243 [exp]	3.5	0.7794
AT5G38820			Transmembrane amino acid trans...		Lus10018652 [exp]	5.7	0.7818
AT5G02390		DAU1	DUO1-activated unknown 1, Prot...		Lus10016715 [exp]	11.8	0.7867
AT5G02790		GSTL3	Glutathione transferase L3, Gl...		Lus10003994 [exp]	14.3	0.7863
AT3G52870			IQ calmodulin-binding motif fa...		Lus10003257 [exp]	15.6	0.7378
AT5G08560			transducin family protein / WD...		Lus10001412 [exp]	19.6	0.7702
AT3G46580		MBD05, MDB5, MD...	METHYL-CPG-BINDING DOMAIN PROT...		Lus10002234 [exp]	19.8	0.6948
AT1G19270		DA1	DA1 (.1)		Lus10032736 [exp]	22.6	0.7490
AT1G27770		PEA1, ACA1	PLASTID ENVELOPE ATPASE 1, aut...		Lus10018687 [exp]	23.2	0.7202
					Lus10025020 [exp]	35.4	0.7237

Compare expression of checked genes

Lus10007716 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.