Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37750 398 / 2e-132 AP2_ERF DRG, CKC1, ANT DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) AT1G72570 355 / 8e-118 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G51190 344 / 2e-111 AP2_ERF PLT2 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) AT3G20840 340 / 5e-110 AP2_ERF PLT1 PLETHORA 1, Integrase-type DNA-binding superfamily protein (.1) AT5G57390 338 / 3e-109 AP2_ERF PLT5, EMK, CHO1, AIL5 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) AT5G17430 330 / 9e-106 AP2_ERF BBM BABY BOOM, Integrase-type DNA-binding superfamily protein (.1) AT5G10510 300 / 2e-94 AP2_ERF PLT3, AIL6 PLETHORA 3, AINTEGUMENTA-like 6 (.1.2.3) AT5G65510 293 / 1e-92 AP2_ERF PLT7, AIL7 PLETHORA 7, AINTEGUMENTA-like 7 (.1) AT3G54320 230 / 3e-69 AP2_ERF ATWRI1, ASML1, WRI1 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) AT1G79700 209 / 6e-63 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018655 [exp] 791 / 0 AT4G37750 430 / 9e-145 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Lus10037670 [exp] 363 / 8e-122 AT1G72570 355 / 1e-120 Integrase-type DNA-binding superfamily protein (.1) Lus10031831 [exp] 345 / 4e-113 AT3G20840 580 / 0.0 PLETHORA 1, Integrase-type DNA-binding superfamily protein (.1) Lus10031260 [exp] 343 / 1e-110 AT1G51190 667 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Lus10012728 [exp] 305 / 1e-96 AT5G10510 495 / 1e-170 PLETHORA 3, AINTEGUMENTA-like 6 (.1.2.3) Lus10002657 [exp] 281 / 1e-87 AT5G10510 467 / 5e-160 PLETHORA 3, AINTEGUMENTA-like 6 (.1.2.3) Lus10008939 [exp] 256 / 1e-78 AT3G54320 303 / 2e-98 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10028880 [exp] 255 / 3e-78 AT3G54320 298 / 1e-96 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10001553 [exp] 246 / 3e-76 AT1G16060 331 / 3e-112 ARIA-interacting double AP2 domain protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G114800 [exp] 460 / 3e-155 AT4G37750 459 / 5e-155 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Potri.005G148400 [exp] 455 / 3e-153 AT4G37750 399 / 7e-132 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Potri.014G012200 [exp] 409 / 2e-135 AT4G37750 405 / 8e-134 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Potri.007G007400 [exp] 407 / 3e-134 AT4G37750 412 / 9e-137 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Potri.001G169500 [exp] 362 / 1e-118 AT1G72570 389 / 2e-131 Integrase-type DNA-binding superfamily protein (.1) Potri.001G018400 [exp] 345 / 4e-112 AT1G51190 639 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Potri.008G076400 [exp] 350 / 7e-112 AT5G17430 405 / 4e-133 BABY BOOM, Integrase-type DNA-binding superfamily protein (.1) Potri.010G181000 [exp] 349 / 1e-111 AT5G17430 399 / 2e-130 BABY BOOM, Integrase-type DNA-binding superfamily protein (.1) Potri.003G205700 [exp] 343 / 3e-111 AT1G51190 635 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Potri.018G091600 [exp] 335 / 8e-108 AT5G57390 422 / 9e-142 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10007719 pacid=23149247 polypeptide=Lus10007719 locus=Lus10007719.g ID=Lus10007719.BGIv1.0 annot-version=v1.0 ATGAAAATGGATCTTCCCTCCGACCACCCTCTCTACATCACCGGACAACAACAAGGACCCTTCCTCCACCACCTCAACCACTCCCCTTTGACCGTTATGC CCCTCAAATCCGACGGCTCTCTCTGTATTCACCCACCAACATCCACCACCACCTCTTCTTCTTCTTCCTCCCCCAAACTGGAAGACTTTCTCGGCGCCGG CGCCGGCAGACCCGACCACCACCACAATATCCCCTCCTTAACCCTCGACTCTTACTACAATATCAACAACCAGGAAGACACCAACAGCCCATTCCACTTC CACACCCATAACCTCTCTTCCTCTTCTTCATATTATCCCGCCGCCTTTCACTGGATAACGCCGTCCTGCTTCCCAAACTTTGATAACCACAACAACCACC TCCAGGACCTCCAAGCTGCTTGTTGCGTGGGTGGGGATTTGCAGTCTTTGACTTTGTCAATGAGCCCTGGCTCTCAATCCAGCTCTGTTACTGCTACTGC TTCTAACAACAACAATAGCACTACTACTACTACCCAACAACAATGTGTCACCACGGAGAGCAAGAAGAGAGCACTCCCGGAGAAGCCTGCTCAGAAGCAG ACCGTCCACCGCAAGTCCATCGACACTTTTGGCCAACGCACTTCCCAGTACCGCGGCGTTACAAGGCACCGGTGGACTGGTCGGTATGAAGCTCACCTCT GGGATAACAGTTGCAAGAAAGAGGGACAGACTAGGAAAGGGAGGCAAGGGGGATATGATATGGAGGATAAAGCAGCTAGAGCTTATGATCTTGCTGCACT CAAGTACTGGGGTCCTTCTACCCACATTAACTTTCCATTGGAAAATTACCACAAGGAGCTGGAAGAGATGAAGAACATGAGCCGTCAGGAATATGTGGCC CATCTAAGAAGGAAAAGTAGTGGGTTTTCTAGAGGGGCCTCAATGTACAGAGGAGTGACAAGACATCATCAGCATGGAAGATGGCAAGCAAGAATAGGCA GAGTTGCAGGAAACAAGGATCTTTATCTCGGCACCTTCACTACTCAAGAGGAAGCTGCTGAATCATACGACGTTGCTGCCATCAAGTTCCGCGGTGCAAA CGCTGTAACGAATTTCGACATCACGAGGTATGACGTGGAGAAGATCATGGCCAGCAACACTCTTCTTGCAGGAGACCTAGCAAGGAGGAAAACCAAAGAA TTGGACACTACGTCGTCCATGGATATTCCTCAAGCTGCAGCCGTTGGTTACTTAACCACCACCTCAGACAACAATAGCACATCACCACATAACAACAATG GAAACGTGACTAGTCTGTTGGAGTGGAACGCTATGCTGTATGGTTCCAACAACAATCATCATGAAGCAGGATTGGAATCTGGTGGGAATGGATTCATGAG GGTATCGTCTTCATCGCCTTTTCACGATCTCATTGCAATGGAGTCATCTCTAAGTAACGGACTAGTCGACATGACAGCTAAGTTAGGGGGAACACATTCA ACCTCTTCGAATCCTTCGTCTTTGGTGACGAGCTTGAGCAGTTCGAGAGAAGGTAGCCCCGAAAAGGTGGTGAACACCAGCACTACTGCTGCTGCTGCAA CAATGTTGTTTGGTAATAAGCCTCCTCTGGCGTCCAGCAAGTATGTTAGCCCTGTGACATCATCGTCCACGATTCCTCCTTGGTTCCAAGCTAACCTGCC TATGTTTGCTTCATGGAATGACGCTTGA
AA sequence Show only first row Show all	>Lus10007719 pacid=23149247 polypeptide=Lus10007719 locus=Lus10007719.g ID=Lus10007719.BGIv1.0 annot-version=v1.0 MKMDLPSDHPLYITGQQQGPFLHHLNHSPLTVMPLKSDGSLCIHPPTSTTTSSSSSSPKLEDFLGAGAGRPDHHHNIPSLTLDSYYNINNQEDTNSPFHF HTHNLSSSSSYYPAAFHWITPSCFPNFDNHNNHLQDLQAACCVGGDLQSLTLSMSPGSQSSSVTATASNNNNSTTTTTQQQCVTTESKKRALPEKPAQKQ TVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQGGYDMEDKAARAYDLAALKYWGPSTHINFPLENYHKELEEMKNMSRQEYVA HLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFTTQEEAAESYDVAAIKFRGANAVTNFDITRYDVEKIMASNTLLAGDLARRKTKE LDTTSSMDIPQAAAVGYLTTTSDNNSTSPHNNNGNVTSLLEWNAMLYGSNNNHHEAGLESGGNGFMRVSSSSPFHDLIAMESSLSNGLVDMTAKLGGTHS TSSNPSSLVTSLSSSREGSPEKVVNTSTTAAAATMLFGNKPPLASSKYVSPVTSSSTIPPWFQANLPMFASWNDA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10007719 [exp]	0	1
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10018655 [exp]	1.0	0.9902
AT2G39870			unknown protein		Lus10040247 [exp]	1.7	0.9523
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Lus10016110 [exp]	2.0	0.9577
AT4G00820		IQD17	IQ-domain 17 (.1)		Lus10023233 [exp]	3.5	0.9492
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Lus10021452 [exp]	3.9	0.9297
AT2G23950			Leucine-rich repeat protein ki...		Lus10015484 [exp]	4.0	0.9196
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10038189 [exp]	6.9	0.8814
AT3G50870	GATA	GATA18, HAN, MN...	MONOPOLE, HANABA TANARU, GATA ...		Lus10028301 [exp]	7.2	0.9080
AT1G11120			unknown protein		Lus10018564 [exp]	7.7	0.9106
AT5G52600	MYB	AtMYB82	myb domain protein 82 (.1)		Lus10038092 [exp]	8.8	0.9202

Compare expression of checked genes

Lus10007719 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.