Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27180 187 / 4e-48 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G27170 181 / 2e-46 transmembrane receptors;ATP binding (.1.2) AT1G72890 167 / 1e-44 Disease resistance protein (TIR-NBS class) (.1), Disease resistance protein (TIR-NBS class) (.2) AT1G72900 158 / 5e-42 Toll-Interleukin-Resistance (TIR) domain-containing protein (.1) AT5G36930 167 / 6e-42 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G72950 154 / 1e-40 Disease resistance protein (TIR-NBS class) (.1) AT5G18360 161 / 2e-40 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G72940 153 / 3e-40 Toll-Interleukin-Resistance (TIR) domain-containing protein (.1) AT5G41540 160 / 6e-40 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G64070 159 / 1e-39 RLM1 RESISTANCE TO LEPTOSPHAERIA MACULANS 1, Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018658 [exp] 977 / 0 AT1G27180 360 / 4e-106 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10027184 [exp] 540 / 3e-176 AT5G36930 227 / 4e-61 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10001366 [exp] 406 / 1e-122 AT5G36930 424 / 1e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10004257 [exp] 393 / 4e-118 AT5G36930 446 / 7e-136 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10014207 [exp] 390 / 8e-118 AT5G36930 446 / 5e-135 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007808 [exp] 385 / 2e-115 AT5G36930 418 / 1e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10012311 [exp] 375 / 3e-112 AT5G36930 354 / 6e-103 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10040576 [exp] 375 / 5e-112 AT1G27180 355 / 3e-103 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10007811 [exp] 372 / 5e-111 AT5G36930 376 / 1e-110 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G019710 [exp] 239 / 1e-68 AT5G36930 445 / 2e-144 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002568 [exp] 231 / 4e-66 AT5G36930 439 / 2e-142 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 241 / 8e-66 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 241 / 1e-65 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002400 [exp] 237 / 6e-65 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G046000 [exp] 229 / 2e-64 AT5G36930 496 / 1e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002200 [exp] 232 / 2e-63 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G052000 [exp] 233 / 3e-63 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002428 [exp] 223 / 4e-63 AT5G36930 387 / 2e-122 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T011750 [exp] 232 / 7e-63 AT5G36930 551 / 2e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10007722 pacid=23149233 polypeptide=Lus10007722 locus=Lus10007722.g ID=Lus10007722.BGIv1.0 annot-version=v1.0 ATGACACTGGTGGCTTTGATGCTTCCAGTTCTGATTTTCCTCTGCAACTTCATTCGAAGGAGGAACTCCAAGAGTAATACCAACACCTCACAACAATCAG AATCCTCACACATTGTCGATTCTTCTGCTTCTACTTCTATTATCTCTCCACCGGATTCTGCGCTTGCTTCCGTTTCTGATGCTAACTTTGCACTTCCAGC TGGGGAATATGAGGTCTTTTTGAATTTTAGAGGACCAGACACACGTCGAGAAATCACTGATGTCCTCTATCATTTTCTTGTTCGCTCCAAAGTTCGCACT TTCAGAGACGATGAGGATCTCCGGAAGGGAGAAGGAATCTGGCCAAGTTTGGTCACAGCTATTGGGGAATCCAAAATTTATGTTGCAGTTTTTTCTCAAA CTTATGCACATAGCAAATGGTGTCTCAAAGAGCTCGCTGAAATGGTTAAGTGTCATAACCAAGATAAGGGCCACATCATCTTACCCATATTCTATAAAGT CGACCCTGGAGATGTGCGGAAACAGACTGGGCCTTATGAGGAAGCATTTAAGCAACACCAGAAGACTTTTGATGATGAAACCATACAAAATTGGAAAAAC GCTCTGAAGCAAGTTGGAGAATTGAAAGGATGGCATGTCACCGACAGGGATGGGCAGGGAGCTATAGCTGATGCTGTTTTTGAAATTATATGGTCACATC TAAGTAAGAATTATGAATTAATGACTGATGAATTGGTTGGAATTGATGAACATGTGAGAGATGTAGTGGAAAGACTAGATTTAGGCTCTAAAGGTGTGAC AATGGTCGGCATCCATGGCATTGGTGGTATAGGAAAGACCACTATAGCAACTGCTGTTTTCAACAAAATATGTGCTAATTTTGATCGTTATTGCTTTGTG GACAATGTACGAGAAACACTACAACAAAGGGACGGTATGATTGCTTTGCAAAATAAAATAATTTCTAGTGCAGTTAGAAAGGTATCTCCTGTTTCTAATG CCAGTGAAGGGATCCGCATGATAAGAGATAGGGTTAGCCAATACAAGGTTCTTATTGTTCTTGATGATGTGGACGAGAAGTTCAAATTCGATAGCATCTT GGGAAAGTCTGAGAACTTTGTTTCAGGAAGTAGATTTATCATCACTTCTAGAAACACAAAAATCGGAGATAATAATGAGTTCAAGATGCATGATCAGTTT AGAGACATGGGGAAGGCAATTGTCCGGGAGGAAGATATAGAACATCCATGGCTGAGAAGTAGAATATGGTCAGATGAGGATGCTTTTGAACTATTAGTTG ACAGGAAGGGAACAGATAAAGTCAAAGCTGTTCGAGCAAACTCGTCATCCCCTGAGATATGTCAACTTACAAATGAACATTTTAGAAACTTGTCAGATTT GAGATACTTTGATGGAAACTCTACGGAGCTTACTGGGGACTTCGAAAATCTTCTTGAGAACTTAAGATGGCTTCAATTGCACTTCCATGAAGACTCAGGT GACCGCTTAACTAACTTTCACATGAATAAACTGGTGATTCTTGATCTACGCGGCAGCGATATAACAGATGATTGGGGAGGGTGGGGACACATCAAGATGG CAAGGAAGCTAAAAGTTCTGGATCTGTCATATTGTCGTTTCATAACAAAAGTTCCCGACCTCTCCACTTATGTCAGCTTAGAGCATTTACATCTTTATGC ACTGAGAGGAAGCACAGAAGACCTGAACATTGGCAATGTGAAGAACATTAAGGTGTTGAATCTCGAGAATTGTAGAATCCGAAAGATAGTGGGAGGTAAC ATTGGAATGCTTCAGCAGCTCCGGGAGCTAAATATCAGTTCGTGCAAGTGTGAAAACTTGGGACTATTTTTTGTCGACATCTCGACATTGCCATCACTAA AGATCCTGAAAACACTAAAAGTAGTCAAGGAAAAAGCCATGGATCTTCCCGCTAGTTTGAAGGAGATCAGCACCTCATCTTCAATTGCTAACCTTCCTGA CTTGATAGACTTGGAGCACTTAAGATTTGAATATTGTGATATTGTTGTGCTCGAACTTCCAGGAGACAAGTGGTTGAAGCAATCCAAGTTGAAGTCTCTG GCAGTGCTATACGCAACCAACATTGTAACCATTGGTCCCCAGCTGCTTCCACCATCTCTAACAGAGCTTCATCTCTCCGTTTGCCCAAAGCTTGAGAGCC TGCCAAATCTTGACAACTTGGAAAATTTGACTGAACTGAACATCTACAGATGTTCCATGCTTCGCGAGATTGAAGGCCTTGGAGGAGGGCTGAAGTCATT GACAACTTTGAAGATAGATTATGCAGAGAGTTTGAATCATATTAACATCCTGGAAAATCTTGTGTCTCTTACCGACTTGCACCTGGAGTCTTTAAATGCT ATGGAAAGACTAACCATTAATTTAGCTGCACTGGGCAGGCTATGCACGATAGTGATCTTGCGCTGCCCACTTCTCACAGACATATTCGGAGGCGTTGATG GTGACAATCAAGTACACAAATGTTTGCGAGAGCTCGAAGTTGGTGGATGCACATTGCTCGAGAAGTTACCCAACTTATCAAAGTTCCCAAGCTTGAGAAA GTTAGGGATTTGGGATATGAAGGGGATCGTGAACTTGGGTGGACTGGAGTCCTTGGAAGGGTTACAAGTACTAGAGTTATCTGACTTACCATCTATAGAG AATTTACCTAGTCTGTCGAAGCTAAGGAAGTTGGATGCACTAATTGTGTCGGATATGCAACGATTACGTGAGGTTGAAGGCATAGAGAACTTGGAATATT TGGAACGAATCCTGCTTCCCGGATGCGTGTCCTTAGAGAAACTGCCTGATCTGTCTGGTTTGAAGAATTTGCTGGTATTAAACTTGCGGGAATGCTGGAA GTTGAATGATCTTTCTGGTTTAAACACCTTGCAGGGCGTAGCCATTGATATGCCTGCAGAGTAA
AA sequence Show only first row Show all	>Lus10007722 pacid=23149233 polypeptide=Lus10007722 locus=Lus10007722.g ID=Lus10007722.BGIv1.0 annot-version=v1.0 MTLVALMLPVLIFLCNFIRRRNSKSNTNTSQQSESSHIVDSSASTSIISPPDSALASVSDANFALPAGEYEVFLNFRGPDTRREITDVLYHFLVRSKVRT FRDDEDLRKGEGIWPSLVTAIGESKIYVAVFSQTYAHSKWCLKELAEMVKCHNQDKGHIILPIFYKVDPGDVRKQTGPYEEAFKQHQKTFDDETIQNWKN ALKQVGELKGWHVTDRDGQGAIADAVFEIIWSHLSKNYELMTDELVGIDEHVRDVVERLDLGSKGVTMVGIHGIGGIGKTTIATAVFNKICANFDRYCFV DNVRETLQQRDGMIALQNKIISSAVRKVSPVSNASEGIRMIRDRVSQYKVLIVLDDVDEKFKFDSILGKSENFVSGSRFIITSRNTKIGDNNEFKMHDQF RDMGKAIVREEDIEHPWLRSRIWSDEDAFELLVDRKGTDKVKAVRANSSSPEICQLTNEHFRNLSDLRYFDGNSTELTGDFENLLENLRWLQLHFHEDSG DRLTNFHMNKLVILDLRGSDITDDWGGWGHIKMARKLKVLDLSYCRFITKVPDLSTYVSLEHLHLYALRGSTEDLNIGNVKNIKVLNLENCRIRKIVGGN IGMLQQLRELNISSCKCENLGLFFVDISTLPSLKILKTLKVVKEKAMDLPASLKEISTSSSIANLPDLIDLEHLRFEYCDIVVLELPGDKWLKQSKLKSL AVLYATNIVTIGPQLLPPSLTELHLSVCPKLESLPNLDNLENLTELNIYRCSMLREIEGLGGGLKSLTTLKIDYAESLNHINILENLVSLTDLHLESLNA MERLTINLAALGRLCTIVILRCPLLTDIFGGVDGDNQVHKCLRELEVGGCTLLEKLPNLSKFPSLRKLGIWDMKGIVNLGGLESLEGLQVLELSDLPSIE NLPSLSKLRKLDALIVSDMQRLREVEGIENLEYLERILLPGCVSLEKLPDLSGLKNLLVLNLRECWKLNDLSGLNTLQGVAIDMPAE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10007722 [exp]	0	1
AT1G73370		ATSUS6, SUS6	ARABIDOPSIS THALIANA SUCROSE S...		Lus10020791 [exp]	3.5	0.7409
AT3G59100		ATGSL11	glucan synthase-like 11 (.1)		Lus10020751 [exp]	15.5	0.7288
AT1G15240			Phox-associated domain;Phox-li...		Lus10035877 [exp]	19.6	0.7001
AT5G13300		AGD3, VAN3, SFC	ASCULAR NETWORK DEFECTIVE 3, S...		Lus10001799 [exp]	30.0	0.6683
AT5G36930			Disease resistance protein (TI...		Lus10033953 [exp]	36.2	0.6997
AT1G06490		CalS7, ATGSL7, ...	callose synthase 7, Arabidopsi...		Lus10001424 [exp]	36.5	0.6973
AT4G29940	HD	PRHA	pathogenesis related homeodoma...		Lus10015536 [exp]	38.0	0.6589
AT3G14570		ATGSL4, ATGSL04	glucan synthase-like 4 (.1.2)		Lus10042478 [exp]	41.7	0.6867
AT5G66380		ATFOLT1	folate transporter 1 (.1)		Lus10028339 [exp]	42.3	0.6634
AT2G40570			initiator tRNA phosphoribosyl ...		Lus10012958 [exp]	46.6	0.6407

Compare expression of checked genes

Lus10007722 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.