Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 332 / 3e-95 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 314 / 2e-88 transmembrane receptors;ATP binding (.1.2) AT1G27180 297 / 2e-82 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G41540 285 / 5e-80 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46260 278 / 9e-77 disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G17680 276 / 4e-76 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G41750 271 / 4e-75 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G31540 266 / 4e-75 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT2G16870 270 / 1e-74 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G22690 268 / 2e-74 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004719 [exp] 1244 / 0 AT5G36930 384 / 3e-113 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10008519 [exp] 1241 / 0 AT1G27180 344 / 2e-98 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10008526 [exp] 1209 / 0 AT5G36930 361 / 5e-106 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10002249 [exp] 1076 / 0 AT5G36930 286 / 2e-80 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10002247 [exp] 1066 / 0 AT5G36930 363 / 1e-108 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007811 [exp] 977 / 0 AT5G36930 376 / 1e-110 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007808 [exp] 820 / 0 AT5G36930 418 / 1e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10000738 [exp] 819 / 0 AT5G36930 191 / 7e-50 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007812 [exp] 811 / 0 AT5G36930 359 / 4e-106 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G143300 [exp] 398 / 8e-118 AT5G36930 519 / 2e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002400 [exp] 388 / 2e-117 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001602 [exp] 385 / 6e-115 AT5G36930 778 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G046000 [exp] 372 / 6e-115 AT5G36930 496 / 1e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 385 / 2e-114 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 384 / 5e-114 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G017082 [exp] 381 / 8e-114 AT5G36930 638 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001933 [exp] 380 / 1e-112 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002200 [exp] 372 / 1e-111 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.003G014200 [exp] 376 / 2e-111 AT5G36930 673 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10007790 pacid=23143603 polypeptide=Lus10007790 locus=Lus10007790.g ID=Lus10007790.BGIv1.0 annot-version=v1.0 ATGAGTTATATAAGAGAAACTGTGACAGTGGCTGCCTTGATTCTCCCGTTGATTCTTCTCTACAAGTTTTTGTATGGAAGAGGAGGCTCCAACGACTCAA ATGACGACGAAATCAACGATAACAATCAACAAACAAGTCGAACATCTCTGGTGGATGCCTCTTCTGTCAAGTCTGATCATGTCGATGCATCTAGTTCATT TCCCTCTACAGATGCAACATCCAACTCCACAAACCCCTCTGGCTTGTTTCCCTCTGTGGAGTATGAGGTGTTTTTGAGTTTCAGGGGTCCAGATACTCGT AAACAATTCACCGATTTTTTGTATCATTTTTTATGTCGCTATAAGATTCACACTTTTAGGGACGATAATGAGCTACGCAAAGGAGAAGAAATAGGGTCCA ACCTCATTCGAGCAATTGATCAATCCAAAATTTACGTCCCGGTCATATCAAAGACTTACGCTGATAGTAAATGGTGTCTTATAGAGCTTGCTGAAATTGT CAGGCGTCAAGAGCAGGACCCTCGACGCATCATACTTCCTATTTTTTATATGGTGGATCCAAATGAGGTACGGCATCAGACTGGATGTTATAAAAAAGCA TTTCAAGAACACGCAAATAAATTTGACGAAAAGACCATACAAAGCTGGAAAGATGCTCTAAAGAAGGTCGGAGTCTTAAAAGGATGGCACATCGGAAGCA ATGACGAGCAAGGAGCTAGAGCAGAGGAAGTTTCCACCGAAGTATGGTCACACCTAAGTAAGGAAAACCTTATTTTAGAGACCGACGAGTTGGTAGGAAT CGATGATACCATAGAAGTCGTTGAAGAAAAGTTGAGTCTAGACTCTAAACGTGTTACGATGGTCGGCCTTTACGGTATGGGTGGAATAGGCAAGACGACG ATTGCAAAGGCCGTTTATAACAAGATTTCTTCTCAGTTTGACCGTTGTTGTTTCGTCGAAAATATACGGGAAACACAAGGCCAGAAGAAGGACGGTAATA TTGTTGTTTTGCAAGAGAAGCTACTAACTGAGATTTTGGGGACGAAATCTTTTGGATTAGCTAATGACAGCGCCGGGAGGAGGATGATAAAGGATAGACT TTCCAGGCTCAAAACACTTGTCGTTTTCGATGATGTGGATGAAAAGTTTAAATTTGAAGATATATATGGAAGTCCTCAAGAATTTAATTTTGGGAGTAGA TTCATCATCACTTCAAGAAATCGGAATGTCTTGAGTACTTTGATTGAGAATCAATGCGAGTTGCATGAAGTTGGATCACTGAGTCCTCCGCATTCACTCG AACTCTTTTGCAAGCATGCATTTAGAAAGAATTCACCTCTGCCGGGTTACAAGTCTTTAGCAGACGACATTGTAAAGATTACAGGAGGACTTCCATTGAC TCTTAAGGTTACAGGTTCACTTTTGTTTAGGCAAGAAAGAGCATTTTGGAATGATAAATTGGAACAATTACGTGAATCACTGCGCGTTGATGAAGTTCAT GACAGGCTAAAGATAAGTTACGATGCGTTGGAGCACGAGGCACGACAAATTTTCTTGGACATAGCTTGTTTCTTCATCGGTACAAACAAGGAAATGCCAT CGTATATGTGGAATGATTGCAAGTTTTATCCTGCGAGTAATATTATTATACTCATTCAAAGATGTATGATCAAAGTTGGGGATAAAGATGAGTTTCAAAT GCACGACCAGCTCAGAGATATGGGAAGAGAAATCGTTCGACGAGAGGATGTCGAGCGTCCGTGGATGAGAAGTAGAATATGGTCGACGGAGGAAGCAACA GAGCTCTTATTGAACAAAAAGGGATCAAGTCAAGTGAAAGCAATCAGATTTTCCTCGCCCTGGACTGTCAAGTATGAGCTTAAGAGCGAATATTTCTCGA ATTTGTCAGAGTTGAGATACTTTCATGCAGAATCCGTCATTTTCACCGGAGATTTCAATAATCTTCTGCCGAATTTAAGGTGGTTTGAGTTGGACAAATA CGATCATAGAGATCCGCAGCCGAAGTTAAGGTGGTTTGAGTTGGACACACACCAGCATAGAGAGAAGGATCCTCCTAATTTGGCCAATTTTATTCCGAAA AAACTAGTAATTTTCGATCTTACTTATAGCGACGTAACGGATGCTTGGGGAGTTTTGAGCCACATAAAGATGGCTGAGAGACTGAAAGTTGTGAAATTTT ATAATTGTTGGTGCTGCAAAAGACTTCCTTACTTCCCCAGGAACATGGAGGTATTATCCATTAGATCTATGAATCAAGTGGATAAAAATCAAATTGAAGA ATTGGATATTGGGGAGTTGAAGAAGCTAAAATCATTGGTTCTGGAGGAAATGAATATACAAAAGATAAGTGGGGGGACATTTGGTATGTTGAAGGAACTT GAAGAGCTTCGATTCGGCGAGCTGTTCAAGTGTGCGAATTTGCGAGAAGTAGTTTCCGATCTTGGCCAACTTTCGTCGCTCAAAATCTTGAACACGGGCA AACATGCATCACTTTCCAGAGATTATAAAGAAGAAATGCAGAGTGATCGTTGGGCCATCGACTATGAATTTCCAATATGTTTGAAGGAGTTAACCACTAC ATCTCGGATTTCGAATCTTACGAAGATGTTGGATTTGGAGGTTTTGGATGTCGACAGATGCAAGGATGGAATTGACATCCCTCATGCCTCAAACAGTGAT GAAGTTCAAGGTAGCGTGTGGTGGAAGGTATCCAAGTTGAAGTCTATGAAACTCTATGGCACAAAATTCAATATCAATGATGCTTCCGATGGTGGTCGTT ATTTACTACCATCGTCGCTAACCTCTCTCAGATTTAGAGGTTGTTACGAACCGACGTGGCTTCCAGGCTTGGAGAATCTGGACAAGTTGACTCTTCTTGA ACTCGTCCACATCTCCCAAACTCTTGGTGCCGATTTGGATGGGCTACAAGGGCTGGCATCGTTGCAAACCCTAGAGATTTGGTCAGTACGTGGTTTAGCT CGGATCAAGGGTCTCAGGGATCTCTTGTGTTCTTCCACCAGATGCAAGTTGCGGTCGTTAGTAGTTTACTTCTGTCGTGACCTCACCGAGTTACTCCCAT GCGAACTCGATGACCAAACAGTAGTAACCCCCTCTTTGCAACGCCTACGCATTGATGATTGTCCAAAGTTGGAGGTTGGTCCGATGATACGATCTCTCCG AAAGTTCCCAATGCTAAAGGAGTTGATGCTCGTTGGGGTAAATATCACTAAGGAAGAGGACTTGGAGGTGCTCGGATCCCTGGAAGAGTTGGTTCTTTTA GAGTTGGGTACATCTGCCAGCTTAGAGAGGTTACCTTGTTTGTCAAAGCTACAAAAGTTATCGAATTTACAAGTGTGTATGCCCCGGTTGCGAGAGATCC AAGGGCTTGCAGAGTTGAAGTCTTTACAAGTGTTGGCTCTCGGGGGTTGCACGTCGTTGGAGAGACTCTGTCCCGAAGATCATCAACAACACTTCTTCTC TAGCCTGGAGAACCTGAATTTCCTAGACATTACAATGTGCAAAAACTTGAGTGATGATCATCTCTCTGCACTCAAAGCTACTCTACCACCCAATTTAAGT ATGATATGGCCCCAGGAGGATAATTGGAAGAGGGCCGCCCACTTGAGAAAAAGGGAGCTTGAATACTGGAGATCGAACACACGACCTGTCGTGTAA
AA sequence Show only first row Show all	>Lus10007790 pacid=23143603 polypeptide=Lus10007790 locus=Lus10007790.g ID=Lus10007790.BGIv1.0 annot-version=v1.0 MSYIRETVTVAALILPLILLYKFLYGRGGSNDSNDDEINDNNQQTSRTSLVDASSVKSDHVDASSSFPSTDATSNSTNPSGLFPSVEYEVFLSFRGPDTR KQFTDFLYHFLCRYKIHTFRDDNELRKGEEIGSNLIRAIDQSKIYVPVISKTYADSKWCLIELAEIVRRQEQDPRRIILPIFYMVDPNEVRHQTGCYKKA FQEHANKFDEKTIQSWKDALKKVGVLKGWHIGSNDEQGARAEEVSTEVWSHLSKENLILETDELVGIDDTIEVVEEKLSLDSKRVTMVGLYGMGGIGKTT IAKAVYNKISSQFDRCCFVENIRETQGQKKDGNIVVLQEKLLTEILGTKSFGLANDSAGRRMIKDRLSRLKTLVVFDDVDEKFKFEDIYGSPQEFNFGSR FIITSRNRNVLSTLIENQCELHEVGSLSPPHSLELFCKHAFRKNSPLPGYKSLADDIVKITGGLPLTLKVTGSLLFRQERAFWNDKLEQLRESLRVDEVH DRLKISYDALEHEARQIFLDIACFFIGTNKEMPSYMWNDCKFYPASNIIILIQRCMIKVGDKDEFQMHDQLRDMGREIVRREDVERPWMRSRIWSTEEAT ELLLNKKGSSQVKAIRFSSPWTVKYELKSEYFSNLSELRYFHAESVIFTGDFNNLLPNLRWFELDKYDHRDPQPKLRWFELDTHQHREKDPPNLANFIPK KLVIFDLTYSDVTDAWGVLSHIKMAERLKVVKFYNCWCCKRLPYFPRNMEVLSIRSMNQVDKNQIEELDIGELKKLKSLVLEEMNIQKISGGTFGMLKEL EELRFGELFKCANLREVVSDLGQLSSLKILNTGKHASLSRDYKEEMQSDRWAIDYEFPICLKELTTTSRISNLTKMLDLEVLDVDRCKDGIDIPHASNSD EVQGSVWWKVSKLKSMKLYGTKFNINDASDGGRYLLPSSLTSLRFRGCYEPTWLPGLENLDKLTLLELVHISQTLGADLDGLQGLASLQTLEIWSVRGLA RIKGLRDLLCSSTRCKLRSLVVYFCRDLTELLPCELDDQTVVTPSLQRLRIDDCPKLEVGPMIRSLRKFPMLKELMLVGVNITKEEDLEVLGSLEELVLL ELGTSASLERLPCLSKLQKLSNLQVCMPRLREIQGLAELKSLQVLALGGCTSLERLCPEDHQQHFFSSLENLNFLDITMCKNLSDDHLSALKATLPPNLS MIWPQEDNWKRAAHLRKRELEYWRSNTRPVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10007790 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Lus10027184 [exp]	1.4	0.9729
AT5G36930			Disease resistance protein (TI...		Lus10000331 [exp]	2.0	0.9611
AT5G36930			Disease resistance protein (TI...		Lus10007811 [exp]	2.0	0.9680
AT5G36930			Disease resistance protein (TI...		Lus10033953 [exp]	3.0	0.9662
AT1G73370		ATSUS6, SUS6	ARABIDOPSIS THALIANA SUCROSE S...		Lus10041979 [exp]	3.5	0.9562
AT5G36930			Disease resistance protein (TI...		Lus10007813 [exp]	3.6	0.9371
AT5G17680			disease resistance protein (TI...		Lus10014829 [exp]	3.7	0.9442
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10022305 [exp]	5.0	0.9590
AT1G27180			disease resistance protein (TI...		Lus10004727 [exp]	5.5	0.9334
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Lus10036182 [exp]	6.5	0.8993

Compare expression of checked genes

Lus10007790 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.