Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 384 / 3e-113 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27180 345 / 6e-98 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G27170 342 / 1e-97 transmembrane receptors;ATP binding (.1.2) AT5G17680 323 / 1e-91 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G69550 317 / 4e-89 disease resistance protein (TIR-NBS-LRR class) (.1) AT4G16890 290 / 1e-80 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G41750 286 / 6e-80 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT2G14080 279 / 6e-77 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G11250 277 / 2e-76 Disease resistance protein (TIR-NBS-LRR class) (.1) AT5G44510 272 / 6e-75 TAO1 target of AVRB operation1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007814 [exp] 1201 / 0 AT5G36930 373 / 4e-109 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007813 [exp] 1178 / 0 AT5G36930 368 / 1e-107 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007811 [exp] 987 / 0 AT5G36930 376 / 1e-110 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10018658 [exp] 924 / 0 AT1G27180 360 / 4e-106 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10012311 [exp] 912 / 0 AT5G36930 354 / 6e-103 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007829 [exp] 907 / 0 AT5G36930 330 / 2e-94 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10008519 [exp] 900 / 0 AT1G27180 344 / 2e-98 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10008526 [exp] 900 / 0 AT5G36930 361 / 5e-106 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10004747 [exp] 880 / 0 AT5G36930 342 / 3e-99 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T002200 [exp] 427 / 5e-131 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001933 [exp] 432 / 9e-131 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G052000 [exp] 432 / 9e-131 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002400 [exp] 424 / 5e-130 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G017082 [exp] 420 / 1e-127 AT5G36930 638 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 422 / 2e-127 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 421 / 3e-127 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.003G014200 [exp] 421 / 4e-127 AT5G36930 673 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002066 [exp] 419 / 2e-126 AT5G36930 631 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G016425 [exp] 419 / 4e-126 AT5G36930 650 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10007808 pacid=23143567 polypeptide=Lus10007808 locus=Lus10007808.g ID=Lus10007808.BGIv1.0 annot-version=v1.0 ATGCGATTTTTCGTAGAAATCGATCGTAACATTTCGGCCGGGAGAAAGATTATACTCTTCTTCAAACGGTTGTTCGGACGGAGAAGCCCTGCTATTGCAT CCGACCCTCCATCTATTACACCAGCTCCTCGTGTCGCCTCCGATCCTGCTTCCGATCCCTCTGCTTATCCTGCAGCTGCTGCCACCTCTGAACATGCGAC TACTGCATCCAACGACCCTCTGTCTGTTACATCAGCCCCTCATGTTGCCTCCGATCCTACCGGTGCTAGCTCTACCCCATCAACATCGTCTACAACCATC GCACCGGCTTCTTATACATCCCCTGAATCTCCCCATTTGTTAACCCTTCCCACTGGGGAGTACGAGGTGTTTTTAAGCTTCAGAGGTCCGGACACTCGTC ACCAAATCACCGACATCATTTACCGTTTCCTGGTTCATTTGAAAATCCGCACATTCAGGGACGACGACGAGCTCCGCAAGGGGGAAGGAATATGGCCTAA CCTAGTAAGAGCAATTGGTCAGTCCAAAATCTATATCCCGATCTTGTCGGAGAGCTATGCTCATAGCAAATGGTGCCTTCGCGAACTTGCTGAGATCGTT GAACGCCGAAAGCAGGATGGCAGGCACATCATACTTCCCATTTTCTATATGGTGGATCCCAGAGACGTAAGACATCAAACGGGACCTTACCAAGATGCAT TTGCGCAACACGAGCAGAATTTCGACGAGCGTACAGTACGGATTTGGAGAGAGGCTCTAAACGAGGTTGGAACTTTGAAAGGATGGCACGTCAAGAACAA TGACGAGCAAGGAGCAGTAGCGGATCTTGTTTCCAACGTTGTATGGTCACATCTAAGCAAGAGCAACAATGCATTATTGGATATTACTGATGAGTTGGTT GGAATCGATGATCATGTCAAAGCTGTAGTAGACAGCCTCAGTATGGACTCTAATGAAGGCATGGTGATGGTTGGTATTCACGGTGTTGGTGGCGTTGGGA AGACAACTCTTGCAACCGCGGTTTACAACAAGATTTTCACTCGTTTTGACCGCTGTTGTTTTCTGGAAAAAATAAGAGAAACCCAGCAACGAAAGGATGG TAATCTCATCCTGCAGAAGACGCTAATCTCCGATATTTTGAGGATGGATTCAGTAGAATCTATAAAAAACGAGGACATGGCAAGGAAACTCATCAGAGAT AGAGTTTCCGAATACAAAATTCTAGTAGTTCTCGATGATGTGGACGACACGTTCAGATTTGAAGACATTTTAGGAAATCCTAAGAAATTCATTTCGGGGA GTCGATTTATTGCTACGTCTAGAGACACAAGAGTTTTGAGGAGTTTGAACCAAGAGCAATGCAAGCTTTATGCAGTAAATGTAATGGGTTCCGACCGGTC ACTTCAACTCTTCTGCAAGCATGCGTTTAGAAAGGATTCTCCTCCGCCAGATTTTGAGGGTTTATCGCGAGATATCTTATCTACGACAGGAGGACTTCCA TTGATGCTCAAGGTTGTAGGACAACTTCTATACAAGCAAGAGGTGGCTGTTTGGGGAGAAAAGTTGGCACAGTTGAAAGAAACACCGGAAAAAGCGGTGA TGGAAAGGTTGATGATAAGTTATAATGCACTGGAACATGAAGCACAACAGATATTTCTCGATATTGCATGTTTCTTTATCGGAATAGACAAAGATATTGC TTCCTACATGTGGGCAGATTGCAAGTTCCGTCCTATCACCAACGTTAATATTCTTACCCAAAGGTCCATGATCGAGATCGGCGAAGATAACAAGTTCCAA ATGCACGATCAACTTAGAGATATGGGCAGAGAAATCGTACGAAGAGAAAATGTAGAACTTCCATGGATGAGGAGTAGAATGTGGTCAAATGATATCACTG TTAAGCTGTTAGATGATAGAAAGGGCACAAATAGAGTTAAGGGTATTAAGCTAATTCCATCAGACGACTATGTTTCCTGCCAAGTATTTGAGAGTGATTG TTTTACGAATTTATCGGAGTTGAGATATTTCGACGCACCATATATAGAATTAACAGGAGATTTCACTAATCTTCTTCCGAATCTAAGGTGGCTTAGTCTA TCCGGCCATCAGCAACAAAAAGGACGTCCTCTCATCAATCTCAGAATGGAAAACTTGGTCATCCTTGATCTTCAGGGAAGCCATTTCAGAGATAAATGGG ATGGTTGGCGCCATATCAAGGAGGCAAACAAGCTGAAAGTTTTGGACCTTAGCGAATGTGGAAATCTGACGAAAATTCCAAAGTTTCCAGAATCTGGGAG TATAGAAATACTGAATCTTTCTGGCCTCGGAGAGGCACAGGGGAAGTTAGATATAGGGAACTTGAGTAACCTCAAAGTGCTGAATCTCGAGGATTGTGGG ATAAAAAAGATAAAGGGCGGAACGATTTCAATGATTCAAGGGCTTCGAGAGCTCAACGTCACAAATTCAGAGTGCGAGAACCTCGAAGAAGTTCTTAGCG ACATTTGGAAACTGTCGTCCCTCCGAATCTTGAAGACAGTCGGAAAATATACATCTGAGAAGAAGCTTCTTCCTGCAAGCTTGAAGGAATTAACGACTTG TTCCCCTGTAGCTAATCTTTCCGAGCTGCTTGAGCTGGAGATTTTAGTTGTGGAAGACTGTCGTGACGGGCTCGACATTCCTGACATTGATAACGGGTGG TGGAAATCATCCAAGCTGAGCTCTTTAGAACTCTTTCACACCAAAATCAACAATCTCCCGACTGCGTCGGCTAATCGGTTGAGGCTTCCATCATCTCTAG TGAAGATTAACATTTTAGACTGTGACGAGATGGAGTGGCTCCCGAATCTAAAGAATCTGGAGAAGTTGACAGAATTAGTTATCAAGGAGTGTCTCAATTT GAGAGAGATCCAAGGCCTTGGAGGGCTGAAATCGTTAGTAACTCTCGAAATCATTGGTTGCCGACGGTTAGCCCGTCTCAACGAGGGCACACCGGATCTC GTAGCTTTCAACAAGTTGAAAGTGTTAGAGATATCACGATGCCCACTTCTCTCGTCAGTCAAATTCACCAATGACGACTCGGTCAACATCGTTGACTCTT TGGAAAAAATGGTAATCAATGACTGCATGTCATTGGAACTAGACGTTGGATTGATACTATCACACATGTCCAAGTTTTCGAGGCTTAGCGTCTTGAAACT GGGCGAGGTAATCGGCGGTGAAGTGTTAAACTTTCCGTCTCTCGAAGAATTGGCTCAACTGGAAATGTTCTGCTTGCAAGCAACCAGAAAGCTGAATTTG CCGTCAAAGCTGCGGAAGTTGGAGAATTTGGAGTTAAGAGACATCCCGAATTTGCAAGAGATCAAGGGGCTCGGGGAGTTGAAGTCTCTGAAACAAATAA ACCTAGAGGGTTGTTCATCATTAGTAAAGTTTGAGCTATCCGGGTTGCAGAAGTTGGAGGTATTGAATATTGAAGAAGGATGCAAAGAACTAGAGAGACT ACCTTCGCTAGTGAATCTCGTCAACTTACAAGAGTTAACGCTCAACAACCTCACGAGTCTCAGAGAGATTGGCAAAGATGATATTGAAGGTTTGAAGTGT TTGACGAAACTGGATTTGGACGGGTGCGAGGCGCTGGAAAGGTTGCCTGCATATCAGATGCTTGACTTGGAAGAACTGAGCTCTGTCTCGATTGTCGGAT GCACAAACTTGAATGTCGACCAACTCGTAGCCCTAACTAATCCACGTAAAGGATTCCACGTGTGGGGACCGGGTACGAATGAGTCATACTTTCAGAGTCA ACAATACTCGGACAGCGGCTTACTATCAGCTACGTCCAACATGATCAGTAAAGTAGTAGAAGGGTTATCAGGAAATTGGTGGTGA
AA sequence Show only first row Show all	>Lus10007808 pacid=23143567 polypeptide=Lus10007808 locus=Lus10007808.g ID=Lus10007808.BGIv1.0 annot-version=v1.0 MRFFVEIDRNISAGRKIILFFKRLFGRRSPAIASDPPSITPAPRVASDPASDPSAYPAAAATSEHATTASNDPLSVTSAPHVASDPTGASSTPSTSSTTI APASYTSPESPHLLTLPTGEYEVFLSFRGPDTRHQITDIIYRFLVHLKIRTFRDDDELRKGEGIWPNLVRAIGQSKIYIPILSESYAHSKWCLRELAEIV ERRKQDGRHIILPIFYMVDPRDVRHQTGPYQDAFAQHEQNFDERTVRIWREALNEVGTLKGWHVKNNDEQGAVADLVSNVVWSHLSKSNNALLDITDELV GIDDHVKAVVDSLSMDSNEGMVMVGIHGVGGVGKTTLATAVYNKIFTRFDRCCFLEKIRETQQRKDGNLILQKTLISDILRMDSVESIKNEDMARKLIRD RVSEYKILVVLDDVDDTFRFEDILGNPKKFISGSRFIATSRDTRVLRSLNQEQCKLYAVNVMGSDRSLQLFCKHAFRKDSPPPDFEGLSRDILSTTGGLP LMLKVVGQLLYKQEVAVWGEKLAQLKETPEKAVMERLMISYNALEHEAQQIFLDIACFFIGIDKDIASYMWADCKFRPITNVNILTQRSMIEIGEDNKFQ MHDQLRDMGREIVRRENVELPWMRSRMWSNDITVKLLDDRKGTNRVKGIKLIPSDDYVSCQVFESDCFTNLSELRYFDAPYIELTGDFTNLLPNLRWLSL SGHQQQKGRPLINLRMENLVILDLQGSHFRDKWDGWRHIKEANKLKVLDLSECGNLTKIPKFPESGSIEILNLSGLGEAQGKLDIGNLSNLKVLNLEDCG IKKIKGGTISMIQGLRELNVTNSECENLEEVLSDIWKLSSLRILKTVGKYTSEKKLLPASLKELTTCSPVANLSELLELEILVVEDCRDGLDIPDIDNGW WKSSKLSSLELFHTKINNLPTASANRLRLPSSLVKINILDCDEMEWLPNLKNLEKLTELVIKECLNLREIQGLGGLKSLVTLEIIGCRRLARLNEGTPDL VAFNKLKVLEISRCPLLSSVKFTNDDSVNIVDSLEKMVINDCMSLELDVGLILSHMSKFSRLSVLKLGEVIGGEVLNFPSLEELAQLEMFCLQATRKLNL PSKLRKLENLELRDIPNLQEIKGLGELKSLKQINLEGCSSLVKFELSGLQKLEVLNIEEGCKELERLPSLVNLVNLQELTLNNLTSLREIGKDDIEGLKC LTKLDLDGCEALERLPAYQMLDLEELSSVSIVGCTNLNVDQLVALTNPRKGFHVWGPGTNESYFQSQQYSDSGLLSATSNMISKVVEGLSGNWW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10007808 [exp]	0	1
AT1G05610		APS2	ADP-glucose pyrophosphorylase ...		Lus10042456 [exp]	1.4	0.9521
AT3G17730	NAC	ANAC057	NAC domain containing protein ...		Lus10042284 [exp]	1.7	0.9511
AT3G18670			Ankyrin repeat family protein ...		Lus10027721 [exp]	2.8	0.9513
AT3G22400		ATLOX5, LOX5	Arabidopsis thaliana lipoxygen...		Lus10025857 [exp]	4.5	0.9456
AT3G17730	NAC	ANAC057	NAC domain containing protein ...		Lus10026373 [exp]	5.3	0.9092
AT1G73370		ATSUS6, SUS6	ARABIDOPSIS THALIANA SUCROSE S...		Lus10041979 [exp]	6.3	0.9421
AT5G17680			disease resistance protein (TI...		Lus10014829 [exp]	6.5	0.9256
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10022305 [exp]	8.1	0.9294
AT5G36930			Disease resistance protein (TI...		Lus10027184 [exp]	9.5	0.9250
AT5G36930			Disease resistance protein (TI...		Lus10007811 [exp]	9.8	0.9198

Compare expression of checked genes

Lus10007808 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.