Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 230 / 2e-62 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 229 / 7e-62 transmembrane receptors;ATP binding (.1.2) AT1G27180 225 / 2e-60 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G17680 209 / 2e-55 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G45050 186 / 6e-48 WRKY ATWRKY16, TTR1 TOLERANT TO TOBACCO RINGSPOT NEPOVIRUS 1, Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT1G69550 186 / 6e-48 disease resistance protein (TIR-NBS-LRR class) (.1) AT5G41750 185 / 8e-48 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT4G16890 185 / 1e-47 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1) AT2G14080 179 / 1e-45 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41540 178 / 1e-45 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007810 [exp] 1273 / 0 AT5G36930 242 / 1e-65 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007811 [exp] 853 / 0 AT5G36930 376 / 1e-110 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007808 [exp] 852 / 0 AT5G36930 418 / 1e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007814 [exp] 746 / 0 AT5G36930 373 / 4e-109 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007813 [exp] 740 / 0 AT5G36930 368 / 1e-107 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10008526 [exp] 681 / 0 AT5G36930 361 / 5e-106 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10008519 [exp] 673 / 0 AT1G27180 344 / 2e-98 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10004719 [exp] 662 / 0 AT5G36930 384 / 3e-113 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007790 [exp] 650 / 0 AT5G36930 343 / 4e-99 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G004599 [exp] 318 / 2e-92 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.001G066500 [exp] 296 / 7e-87 AT5G36930 462 / 2e-146 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001602 [exp] 290 / 1e-82 AT5G36930 778 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002300 [exp] 288 / 5e-82 AT5G36930 635 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003285 [exp] 286 / 4e-81 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T005501 [exp] 285 / 6e-81 AT5G36930 612 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003942 [exp] 281 / 7e-80 AT5G36930 591 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.003G014200 [exp] 281 / 9e-80 AT5G36930 673 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002400 [exp] 278 / 2e-79 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G018396 [exp] 267 / 2e-79 AT5G36930 374 / 5e-118 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10007809 pacid=23143557 polypeptide=Lus10007809 locus=Lus10007809.g ID=Lus10007809.BGIv1.0 annot-version=v1.0 ATGGTTGGAATTCACGGTCTTGGTGGTATAGGCAAGACCACCATTGCAAAGGCAGTCTACAACGATATTTCTTCTCGATTCGATCGTTGTTGTTTCCTCA AAGACATAAGAGCAAGACAAGAGCAAATGGACGGTAACGTGATTTTGCAAAAGAAGCTAATCTGTGATGTTTTAAGAAAGGATTCAGTTGATATTAGTGA TGAATACCAAGGAAGGAAAATGATAAAGGAGAGAGTATCTCAACACAAAGTTCTTATCATTCTGGACGACGTGGACGAAAACTTTAGATTTGAAGACCTT TTGGGATGTCCTACAGACTTCGTTTCTGGGAGTAAATTCATCGTTACTTCGAGAAACACTCGAGTATTGAGCAATTTGAACGACAATCGATGCGAGTTGT ACGAAGTTGAAGCAATGGATCATCCACAGTCGCTCGAACTCTTCAGCAAACATGCATTCAAAAAGAGTTTCCCCCCATTGGATTACAACGAATTATCAAA TAAGATTGTCGCGACTACGGGAGGGCTTCCTCTAACTCTCAAGGTTATCGGGTCTCTTTTGTTTAGACACGATATCTCGATTTGGAAAGAGAAATTGGTA CAACTAAAGGAAATACCCGAGTTTAAGGTGATGGAATGTTTAAAGATAAGCTACGATACACTCCCGGACGAAGCGCAAGAAATATTCTTGGATATTGCTT GTTTCTTCGTCGGAACAAACAAAGAACTGCCATGTTACATGTGGAGAGATTGCAACTATTTCCCCGTTTGCAGCATCAATATTCTCGTTGAACGATCATT GCTGAAAGTTAGAGATGATGATGAATTCCGAATGCACGACCAACTTAGAGACATGGGCCGAGAAATAGTCCGTCGGGAAAATATCAAACATCCGGAGAAG AGAAGTAGAATATGGTCCGACAAAGACGCCGTGCAGCTCTTATCCAACAAAAAGGAACCAAATCAAGTTAAAGCGATTAGGGTAAACTCGTCCTCAATTG TTGTGGAAGAGCTTAAAAGCGATTATTTCAAGAATTTGTCGGAGTTGAGATATTTCGACGCAGAATCGACGAAGCTTACCGGAGACTTCAACAATCTTCT CCCGGAGTTACGGTGGCTACGATTGCCGAATCATAGGGACGCACCTATGGCTAATTTTCAAATGAAAAGTTTGGTAATCCTCGAACTTCAAAATTTCGTA AATAATAAGTGGGATGGATTCCACCATATCGAGATGGCAGAGAAGCTCAATGTTTTGAATCTTGCCTATAGCAGATCCCTGGCAAAAATTCCAGCATTTC CAGTATCGGGGAGTCTGGAGATTTTAGATCTGACCTACGTTGTACAGCACATCCAAGGCTCGCATGTGTTGGAACTTGGAAAATTAAGGAATTTAATCGT GCTGATACTGAAGCGTTGTACAGCAAGCAGGATTAGCGGAGGTACCATCGGGATGATGAAGGGGCTTCGAGAGCTGGATCTCAGTTTTTTCAATTTCGAG TGCGAAAATTTGAGAGAAACTCTTTCGGACATTGGGAGATTGTCGAGTCTCAAAATTCTCAGACAGATGGGACACTCTAGCCGAGAGTTTAAGGATACGA ATCCTCAGGAGAAATTGCTAGAGGGGATTAAGCTTCCTTTGAGCTTGAAGGAGTTGGAAACTTCATTCCCTGTTCCTAATCTTGTAGAGATGTTGCAATT GGAGAAATTAACATTTTGGAAAAGTGAGCATGGGTTTGACATACCTGATCCATCTTCTTCCTTGTGGTACAAGGTATCCAAGTTGAAGTTTTTGTCACTG TCAAATACGAAGATCAACACTTGTTCTCCTTCTTCTTTGTTGCCTTCTTCGCTAACCGACCTCAGAATCAACGAATGTCTAGTTCTGGATTGGCTACCGA ACCTGGAGAACATGGAAAACTTGACTCAACTATACATCATTCACTCTTGTGTTCGTGGAGAGATTCAAGGGCTCAGAGGGTTGAAATCATTGAAGTCACT TCACATCACCAATGTGCAAGGTTTGACTCGAATCCATGGCCTCGAGGTCCTCGCGATGACCTCATTGGAAAAATTGCTCATCTATTCACGCACATCATTG CAACTAGACATTGGTTTCCTACTACCACGGCTGTCAAATTTCTCGAGGCTTAGGATCTTAGAACTAGGCGGGGTAATCGACAGTAGTACTGATCATGACC AAGTGTTAGCCCTTCCGTCTGTGAAAGAGTTGGCTACATTGAGAATGTGCAACTTGAAATCAATCAAAAAGTTGATTTTCCAGTCGATGATGCCTAAACT GGAGAGTCTATCTTTAGAACAGATGCCAAATATGAAGGAGATCGAGGGGCTCGCGGAGTTGAAGTCTCTGAAAAAGATAACGTTGGGCCGTTGCGAATCA TTAGAAAAGTTTGAGCTATCTGGTTTGCATAATTTGGAGGAAGTGTGTATTTACGAAGGATGCAGAGGACTAGAGAGACTACCGTCTTCTTCGCTAGCGA ATCTCGTCAAGTTACAACGGTTAAAGCTCAAGTATCTCCCGAGCCTGAGAGAGATTGCTGGCATTGAAGGTTTCAAGTGTTTGAAGAAGCTGGATTTGGA AGGATGCAAGGCGCTGGAAAGGTTTCCCGTAGATCAGATGATTGATCATCTCAAAGAATTGAGGTCGGTCAACATTGTCGGATGCACAAACTTGACTGTC GACCAAATAGTTGCCCTGACTACTCCGCCTAAGGGATTCGAAGTGCACGGACCAGGTCTACATGAGTGGTACAATCAAGGTGACGCTGACGAATACTCCG AATCATTATCATATATTGAGTTAAGTTTACAGTAA
AA sequence Show only first row Show all	>Lus10007809 pacid=23143557 polypeptide=Lus10007809 locus=Lus10007809.g ID=Lus10007809.BGIv1.0 annot-version=v1.0 MVGIHGLGGIGKTTIAKAVYNDISSRFDRCCFLKDIRARQEQMDGNVILQKKLICDVLRKDSVDISDEYQGRKMIKERVSQHKVLIILDDVDENFRFEDL LGCPTDFVSGSKFIVTSRNTRVLSNLNDNRCELYEVEAMDHPQSLELFSKHAFKKSFPPLDYNELSNKIVATTGGLPLTLKVIGSLLFRHDISIWKEKLV QLKEIPEFKVMECLKISYDTLPDEAQEIFLDIACFFVGTNKELPCYMWRDCNYFPVCSINILVERSLLKVRDDDEFRMHDQLRDMGREIVRRENIKHPEK RSRIWSDKDAVQLLSNKKEPNQVKAIRVNSSSIVVEELKSDYFKNLSELRYFDAESTKLTGDFNNLLPELRWLRLPNHRDAPMANFQMKSLVILELQNFV NNKWDGFHHIEMAEKLNVLNLAYSRSLAKIPAFPVSGSLEILDLTYVVQHIQGSHVLELGKLRNLIVLILKRCTASRISGGTIGMMKGLRELDLSFFNFE CENLRETLSDIGRLSSLKILRQMGHSSREFKDTNPQEKLLEGIKLPLSLKELETSFPVPNLVEMLQLEKLTFWKSEHGFDIPDPSSSLWYKVSKLKFLSL SNTKINTCSPSSLLPSSLTDLRINECLVLDWLPNLENMENLTQLYIIHSCVRGEIQGLRGLKSLKSLHITNVQGLTRIHGLEVLAMTSLEKLLIYSRTSL QLDIGFLLPRLSNFSRLRILELGGVIDSSTDHDQVLALPSVKELATLRMCNLKSIKKLIFQSMMPKLESLSLEQMPNMKEIEGLAELKSLKKITLGRCES LEKFELSGLHNLEEVCIYEGCRGLERLPSSSLANLVKLQRLKLKYLPSLREIAGIEGFKCLKKLDLEGCKALERFPVDQMIDHLKELRSVNIVGCTNLTV DQIVALTTPPKGFEVHGPGLHEWYNQGDADEYSESLSYIELSLQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10007809 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Lus10007810 [exp]	1.0	0.9793
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Lus10009762 [exp]	5.7	0.8986
AT1G51990			O-methyltransferase family pro...		Lus10002668 [exp]	6.5	0.8936
AT5G40100			Disease resistance protein (TI...		Lus10000329 [exp]	8.7	0.8947
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10020190 [exp]	9.2	0.9233
AT3G04890			Uncharacterized conserved prot...		Lus10015938 [exp]	9.5	0.8841
AT2G39650			Protein of unknown function (D...		Lus10020938 [exp]	11.0	0.8614
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10020191 [exp]	11.4	0.9079
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10020730 [exp]	12.7	0.8257
AT3G25855			Copper transport protein famil...		Lus10021687 [exp]	16.9	0.8811

Compare expression of checked genes

Lus10007809 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.