Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 241 / 2e-65 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 230 / 2e-61 transmembrane receptors;ATP binding (.1.2) AT1G27180 225 / 7e-60 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G17680 209 / 7e-55 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G45050 199 / 7e-52 WRKY ATWRKY16, TTR1 TOLERANT TO TOBACCO RINGSPOT NEPOVIRUS 1, Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT5G51630 193 / 5e-50 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT5G41750 184 / 2e-47 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G41540 184 / 2e-47 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G45260 184 / 5e-47 WRKY ATWRKY52, SLH1, RRS1 SENSITIVE TO LOW HUMIDITY 1, RESISTANT TO RALSTONIA SOLANACEARUM 1, ARABIDOPSIS THALIANA WRKY DOMAIN PROTEIN 52, Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT1G63870 182 / 1e-46 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007809 [exp] 1237 / 0 AT5G36930 239 / 5e-65 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007811 [exp] 769 / 0 AT5G36930 376 / 1e-110 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007808 [exp] 696 / 0 AT5G36930 418 / 1e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007813 [exp] 625 / 0 AT5G36930 368 / 1e-107 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10008519 [exp] 616 / 0 AT1G27180 344 / 2e-98 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10000331 [exp] 615 / 0 AT5G36930 217 / 1e-57 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10008526 [exp] 605 / 0 AT5G36930 361 / 5e-106 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10002247 [exp] 598 / 0 AT5G36930 363 / 1e-108 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007814 [exp] 597 / 0 AT5G36930 373 / 4e-109 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G004599 [exp] 318 / 2e-91 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.001G066500 [exp] 293 / 6e-85 AT5G36930 462 / 2e-146 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001602 [exp] 297 / 2e-84 AT5G36930 778 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T005501 [exp] 292 / 1e-82 AT5G36930 612 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G018396 [exp] 277 / 2e-82 AT5G36930 374 / 5e-118 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003285 [exp] 288 / 5e-81 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002300 [exp] 286 / 2e-80 AT5G36930 635 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.003G014200 [exp] 285 / 6e-80 AT5G36930 673 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T011750 [exp] 284 / 1e-79 AT5G36930 551 / 2e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001933 [exp] 282 / 6e-79 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10007810 pacid=23143607 polypeptide=Lus10007810 locus=Lus10007810.g ID=Lus10007810.BGIv1.0 annot-version=v1.0 ATGGTTCGTAAGATAGGAGCTGCGATTACCGCCGCCACAAAGATTCTCCTCTACAAGATGTTGTATGTAAAGAGAGATTCCAATGAATCAAACAACAACA ACGATTACAATAATACCCATCATCCACCAAATTCAGAATCTCCCCTTCCTTCCACTTCTTCTAACATTGACAGTGACAATAATACCCCTCAGCCACCAAA TTCAGAATCTCTTCTTCCTTCCTCTTCTTCCACGATTGACATTGCGGAATCCTCCAATTCGTTGTCCTTTCCTTCCGTGGAGTACAAGGTGTTCTTGAGC TTCCGAGGTCCAGACACTCGTGAGTTATTCACCGATGTCCTTTATCGTTTTCTCATTCACTCCAAGATCCGCACGTTCAAAGATGACAATGATCTCCGCA AGGGAGAAGGTATATGGTCAAACCTTGTAAAAGCCATCGACCAGTCAAAGATCTACGTTCCAATTATTTCGGAGAGCTATGCTCATAGTAAATGGTGCCT TAAAGAGCTTGCGGAGATCGTTGAGCGCCAAAAAGAAGACAAAAGGCGTGTGACGATGGTTGGAATTCACGGTCTTGGTGGTATAGGCAAGACCACCATT GCAAAGGCAGTCTACAACGATATTTCTTCTCGATTCGATCGTTGTTGTTTCCTCAAAGACATAAGAGCAAGACAAGAGCAAATGGACGGTAACGTGATTT TGCAAAAGAAGCTAATCTGTGATGTTTTAAGAAAGGATTCAGTTGATATTAGTGATGAATACCAAGGAAGGAAAATGATAAAGGAGAGAGTATCTCAACA CAAAGTTCTTATCATTCTGGACGACGTGGACGAAAATTTTATATTTGAAGACCTTTTGGGATGTCCTACAGACTTCGTTTCTGGGAGTAAATTCATCGTC ACTTCGAGAAACACTAGAGTATTGAGCAATTTGAACGACAATCAATGCGAGTTGTACGAAGTTGAAGCAATGGATCATCCACAGTCGCTCGAACTCTTCA GCAAACATGCATTCAAAAAGAGTTTCCCCCCATTGGATTACAACGAATTATCAAATAAGATTGTCGCGACTACGGGAGGGCTTCCTCTAACTCTCAAGGT TATCGGGTCTCTTTTGTTTAGGCACGATATCTCGATTTGGGAAGAGAAATTGGTACAACTAAAGGAAATACCCGAGTTTAAGGTGATGGAATGTTTGAAG ATAAGCTACGATACACTCCCGGACGAAGCGCAAGAAATATTTTTGGATATTGCTTGTTTTTTCGTCGGAACGAACAAAGAACTGCCATGTTACATGTGGA GAGATTGCAATTATTTCCCCGTTTGCAGCATCAATATTCTCGTTGAACGATCATTGCTGAAAGTTAGAGATGATGATAAATTTCGAATGCACGACCAACT TAGAGACATGGGCCGAGAAATAGTCCGTCGGGAAAATATCAAACATCCGGAGAAGAGAAGTAGAATATGGTCCGACAAAGACGCCTTGCAACTCTTATCC AACAAAAAGGAACCAAATGAAGTTAAAGCGATTAGGGTAAACTCGTCCTCAATTGTTGTGGAAAAGCTTAAAAGCGATTATTTCAAGAATTTGCCAGAGT TGAGATATCTTGACGCAGAATCGACGAAGCTTACCGGAGATTTCAACGGTCTACTCCCGGAGTTGAGGTGGCTACGGTTGCCATATCATAAGAACGCACA TGTGGCTAACATTCAGGTGAAGAGTTTGGTAATCCTCGAACTTCCATATAGCGATGTAGATGATGATTGGGAGGTATTGCGCCAGATCAAGATGGCAGAG AAGCTCAAGGTTTTGAATCTTGCTTATAGCAACCTCCTAACAAAAATTCCAGAGTTTCCGAAATCGGGGAGTCTAGAGATTTTAGATCTGAGTAGCGATC AAGGTCACAGCCTAGGCTCGTTGCAGGTGCTAGATCTCGACAAGTTAAGGAAGTTAATCGTTCTGAGACTGATGAGTTGCGAGGCAAGCAGGATTAGTGG AGGAACATTTGGGATGATGGTGGGACTTCGAGAGCTTGATCTCAGATATTTCAATTCCGCGTGTGAAAATTTGGGAGAAGCTCTTTCCGACATCGGGAAA TTGTCACGCCTCGAAATTCTCAGACACACGTTTGAGGATACTAATCCTGATCATCAGCTTAAGCTTCCTTTAAGCTTGAAGAAGTTGGAAACTTCATCCC CTGTTCCTAATCTCAAAGAGATGTTGCAATTGGAGAAATTGACATTTTGGGAAAGTAAGCATGGCTTTGACATCCCTGATCTATCTTCTTCCTTGTGGTG GACGGTATCCAAATTGAAGGTTCTGGATCTGTTGTTTACCAAAATCAACAGTTGCTCTCCTTCTTCTTTCTTGCCTCGGTCGCTAACCCATCTCAAAATC AGCTATTGTGATGTTTCGGTGTCGATACCAAACCTAGAAAACCTGCTAAACTTGACTGCATTATTGATCGACAATGTGCGAGGTTTGACTCGAATCTGTG GCCTCCACCACCTCATGTGGTTGGAAACTATGCTCATCCGTGACTGCACATCATTGCAACTAGACCTTGGATTGTTGCTGTCACGCCTGTCATGGTTCTC GAGGCTTAGAACCTTAGAACTCGGCAGAGTAATCGTCATCAGTGACCGAGTATTAGCCTTTCCATGTGTTGAAAATTTGGTTATGCTACAAATCTACGAC GTGGAATCAACACAAATCGAGAAGTTGATTTTTCAGTCGATGATGCCTAAGTTGGAGTATCTACATTTACGCAACATGCCAAACCTGCAGGAAATCGAGG GACTCACGAAGTCGAAGTCTCTGCGGTTCGTATATTTAATGTATTGTGAATCATTAGCAAAGTTTGAACTATCTGGCTTGCAGAATTTGGAGCTGCTGCA TATCAAAGGAGGATGCAGGGGACTAGATAGACTATCTTTTTCACTAGTGAATCTCGTCAACTTACATGAGTTGGTGCTCAGTGACCTCCCAAGTCTGAGG GAGATAGTTGGCATTGAAGGTTTGAAATGTTTGAAGGAATTGGATTTGAGAGGATGCAAGGCTCTGGAAAGGTTGCCGGCAGATGAGATGATTGATCAGC TGGAAGAATTGTGGTCCGTCAACATTGTCGGATGCACAAGCTTGAGTGTCGGCCAACTCGTTGCCCTGACTGATCGTCGTAAGCGATTCAAGGTGCACGG ACCACGTCAACACGAGTGGTACAATCTGGGTGACGAATACTCCGTGCCATGGTTTTTTTTCCGATGA
AA sequence Show only first row Show all	>Lus10007810 pacid=23143607 polypeptide=Lus10007810 locus=Lus10007810.g ID=Lus10007810.BGIv1.0 annot-version=v1.0 MVRKIGAAITAATKILLYKMLYVKRDSNESNNNNDYNNTHHPPNSESPLPSTSSNIDSDNNTPQPPNSESLLPSSSSTIDIAESSNSLSFPSVEYKVFLS FRGPDTRELFTDVLYRFLIHSKIRTFKDDNDLRKGEGIWSNLVKAIDQSKIYVPIISESYAHSKWCLKELAEIVERQKEDKRRVTMVGIHGLGGIGKTTI AKAVYNDISSRFDRCCFLKDIRARQEQMDGNVILQKKLICDVLRKDSVDISDEYQGRKMIKERVSQHKVLIILDDVDENFIFEDLLGCPTDFVSGSKFIV TSRNTRVLSNLNDNQCELYEVEAMDHPQSLELFSKHAFKKSFPPLDYNELSNKIVATTGGLPLTLKVIGSLLFRHDISIWEEKLVQLKEIPEFKVMECLK ISYDTLPDEAQEIFLDIACFFVGTNKELPCYMWRDCNYFPVCSINILVERSLLKVRDDDKFRMHDQLRDMGREIVRRENIKHPEKRSRIWSDKDALQLLS NKKEPNEVKAIRVNSSSIVVEKLKSDYFKNLPELRYLDAESTKLTGDFNGLLPELRWLRLPYHKNAHVANIQVKSLVILELPYSDVDDDWEVLRQIKMAE KLKVLNLAYSNLLTKIPEFPKSGSLEILDLSSDQGHSLGSLQVLDLDKLRKLIVLRLMSCEASRISGGTFGMMVGLRELDLRYFNSACENLGEALSDIGK LSRLEILRHTFEDTNPDHQLKLPLSLKKLETSSPVPNLKEMLQLEKLTFWESKHGFDIPDLSSSLWWTVSKLKVLDLLFTKINSCSPSSFLPRSLTHLKI SYCDVSVSIPNLENLLNLTALLIDNVRGLTRICGLHHLMWLETMLIRDCTSLQLDLGLLLSRLSWFSRLRTLELGRVIVISDRVLAFPCVENLVMLQIYD VESTQIEKLIFQSMMPKLEYLHLRNMPNLQEIEGLTKSKSLRFVYLMYCESLAKFELSGLQNLELLHIKGGCRGLDRLSFSLVNLVNLHELVLSDLPSLR EIVGIEGLKCLKELDLRGCKALERLPADEMIDQLEELWSVNIVGCTSLSVGQLVALTDRRKRFKVHGPRQHEWYNLGDEYSVPWFFFR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10007810 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Lus10007809 [exp]	1.0	0.9793
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Lus10009762 [exp]	5.3	0.9008
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10020190 [exp]	10.0	0.9161
AT3G04890			Uncharacterized conserved prot...		Lus10015938 [exp]	10.2	0.8879
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10020191 [exp]	10.8	0.9102
AT5G40100			Disease resistance protein (TI...		Lus10000329 [exp]	13.7	0.8928
AT1G51990			O-methyltransferase family pro...		Lus10002668 [exp]	18.0	0.8817
AT1G27180			disease resistance protein (TI...		Lus10007831 [exp]	18.7	0.8978
AT1G76770			HSP20-like chaperones superfam...		Lus10028577 [exp]	18.7	0.8948
AT1G13920			Remorin family protein (.1)		Lus10004665 [exp]	19.2	0.9002

Compare expression of checked genes

Lus10007810 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.