Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 359 / 1e-104 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 338 / 3e-96 transmembrane receptors;ATP binding (.1.2) AT1G27180 330 / 2e-93 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G17680 316 / 4e-89 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT2G16870 298 / 6e-84 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41750 295 / 4e-83 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G41540 294 / 5e-83 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41550 292 / 4e-82 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G11170 292 / 5e-82 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46270 288 / 2e-80 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007790 [exp] 976 / 0 AT5G36930 343 / 4e-99 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10008526 [exp] 966 / 0 AT5G36930 361 / 5e-106 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007808 [exp] 936 / 0 AT5G36930 418 / 1e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10008519 [exp] 934 / 0 AT1G27180 344 / 2e-98 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10004719 [exp] 932 / 0 AT5G36930 384 / 3e-113 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10012311 [exp] 879 / 0 AT5G36930 354 / 6e-103 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007813 [exp] 860 / 0 AT5G36930 368 / 1e-107 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007814 [exp] 859 / 0 AT5G36930 373 / 4e-109 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007812 [exp] 858 / 0 AT5G36930 359 / 4e-106 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T002400 [exp] 438 / 2e-135 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002200 [exp] 438 / 2e-135 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G046000 [exp] 420 / 1e-132 AT5G36930 496 / 1e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.007G143300 [exp] 436 / 2e-131 AT5G36930 519 / 2e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 431 / 5e-131 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G052000 [exp] 432 / 6e-131 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.003G014200 [exp] 430 / 1e-130 AT5G36930 673 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 429 / 2e-130 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002300 [exp] 428 / 4e-130 AT5G36930 635 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T005501 [exp] 426 / 2e-129 AT5G36930 612 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10007811 pacid=23143583 polypeptide=Lus10007811 locus=Lus10007811.g ID=Lus10007811.BGIv1.0 annot-version=v1.0 ATGGCGTATATTCAAGGAGTCGTAACTGTGGCCGCGCTTGTTGTTCCGCTGATCATCCTCTATAAGTTGTGGAATACGAGGAGAGATCGAGATAGCAACA ATCGTAGTAATATCGATCAACGACACGACTATGTCGTCACCTCTTACGTCATGTTTGACTCGGAAGATTTGGAAAACAACCATAATTATGGTGATAATAA CATCATAAAGAGAGATTTCAGTGACTCCGAAAACAACAATTACAACAACACCCCTAATCCATCAAATTCAGAATCTCTTTTCCCTTCATCTTCATCCAAC ATTGACAATGACAATACTGCCCCTCAACCATCAAATTCAGAATCTTTCCATCCTTCCACTTCGACTAAAAGCACCAATGAGAATAATACCCCTCATGCAT CAAATTCAGAATCTCTTCTTCCTTCGTTTTCATCTTCATCTTCATCCATGAATGAATTTGCAGAATCCTCCAATTCATTGTCCCTTCCATCCGTGGAGTA TGAGGTGTTCTTGAGCTTTCGAGGTCCGGACACTCGTAAGCAATTCACGGATATTCTTTACCGTTTTCTCGTCCACTCCAAGATTCACACGTTTAGGGAT GACGATGAACTCCGCAAGGGAGAAGGTATATGGCCAAACCTTGCAAAGGCCATCGACCAGTCAAAGATCTACGTTCCGATTATCTCGAAGACCTATGCTC ACAGTAAATGGTGCCTTAAAGAGCTTGCTGAGATCGTTAAGCGTCAAAAGGAAGACAGAAGATGTCTCATACTTCCAATTTTCTATATGGTAGATCCAAG AGACATAAGGCATCAAACTGGTCCTTACGAAGATGCATTCCAGCAGTATGCGGACCATTTCGATGAAAAGACCATACAGAGCTGGAAAGACGCTTTGAGC GATGTCGGGAGCTTGAAAGGATGGCATGTCAAGAGCAATGATGAGGTGGGAGCTATAGTAGATCAAGTTTATGCAGATGTATGGTCATATCTAAGCAAGG ATAACTTTGTTATAGATACCGATGAGTTGGTCGGAATCGATTATCATATACAGGTATTAACAGAAAAATTGAACTTAGATTCCGACGAAGGTGTGACAAT GGTAGGAATTCACGGTCTTGGTGGTATAGGCAAGACCACCATTGCAAAGGCCGTCTACAACATTTTTTCGTATCAATTTGATCGTTGTTGTTTCCTCAAC GACATAAGAGAAACACAAGGACAAAAAGACGGCATTGCGATCTTGCAAAAGAAGCTAATCTCTGATATTTTGAGAAAGGAATCAGCTGATATTAGAGACG AAAACGAGGGGAGGAAAATGATAAAAGAGAGAGTATCTCGACATAAGGTTCTTGTTGTTCTCGATGATGTGGATGAAAATTTCAAAATCGAAGACCTTTT AGGAAGTCCTAAAGATTTCAGTTCCGGGAGTAGATTCATCGTGACTTCTAGAAACACTAAAATACTGAGAACTTTAATTGACAATCAATGGCAGTTGTAT GAAGTTGGAGCGATGGATCATTTACGCTCACTCGAACTCTTCTGCAAGCATGCTTTCAAGATGAATTCTCCTCCATCATCGGATTACAAGATTTTATCGG ATAAGATTGTCGCGACTACAGGAGGGCTTCCATTAACTCTCAAGGTTATAGGGTCTCTTTTATTTCGAGAAGATATACCGGTATGGGAAGAGAAATTGGT GCAGCTAAACGAAACACCAGAGTTTGAGGTCATGAAAAGGTTAAAGATAAGCTTTGATACACTTTCGTACGAAGCACAGCAAATATTCCTGGATATCGCT TGTTTCTTTATCGGAACAAACAAGGAGTTTCCATGTTACATGTGGAGCGATTGTAGATATTATCCAATTAGTAACATCAATGTCCTCGTCCAAAAATCAC TGCTGAAAGTTGGAGAGAATACCGAGTTTCAAATGCATGATCAACTCAGAGACATGGGGAGGGAAATAGTCCGCCAGGAAAATATTGATCAGCCATGGAT GAGAAGCAGAATATGGTCCGACGAAGACGCTTTGGAGCTCTTGTCGAACGAGAAGGGACAAAATCAAGTTAAAGCAATTAGGCTAAACTCATCCTCTCTT GTTATGGATGAGCTTAACAACAATTGTTTTACAGGTTTGTCAGAGTTGAGGTATTTTGATGCAAAATCTACGACGCTTACTGGAGACTTCAGCAATCTTC TTCCGAATTTAAGGTGGCTACGACTGGCAGAGCATAAGAATGGGAACCGCGATGTGGCTAACTTTCAAATGAAAAATTTGATGGTTCTTGATCTTCAGGA AAGCAAAATCAACGATAATTGGGGCGTTTGGCATCATATCAAGATGGCGAAGAAGCTCAAGGTTTTGAATCTGGAAAAATGTGACAGCCTGAGAAAATTA CCACTTTTTCCGGAATCCGGCAGTCTAGAGATTTTAGATCTTAGCTCCCTTGAACTGCCAGAACTGGATATCAGCAAGTTGAAAAAGTTAATCGTGCTGA GACTGAAGCGGTGTACGACAAGAAAGATAATGGGAGGGACAATTGGGATGATGAAGAAGCTCCGCGAGCTTGATCTCACCGGCTTCAACTTCGGGTGCGA ACATTTGAGAGAAGTGCTGGCCGACATTGGGCAGCTGTCGGATCTCGAAATTTTGAGACAGACCGAATGGGTTGGCATTCGTGGTAACCATATTCAGGAG CAAGTGCTAACAGGGATTAAGCTTCCTGTAAGCTTAAAGGAGTTGGGAACTTCATCACCGGTTCCGAATCTCGAAGAGTTGGTGAAGTTGGAGAAATTAT ACGTTGCGAACTGTATGCATGGAGTTGACATCCCTCCATCTTCTTCCTTGTGGTGGAAGGTATCCAAGTTGAAGTCTCTTTCACTGAGAAAAACTAAAGT CAACCCGTCTCCTTCTTCTTCTTCTCTGTTCCCTTCATCGTTGATTATTCTCGAAATCAAAAACTGTGATAAGTTGGTGTGGCTACCAACCCTAGAGAAT TTGGAAGACTTGGCACGATTTTCGATCAAGGACTCCCATGGTTCGACAGATATTCATGGGCTCGCAGGGTTGAAATCGTTACAGTCTCTTGAGCTCGAAA CAGCATATCGTGTGAGGCGAATCCATGGCCTCGAGGATCTAATGTCGTCTCCTTCTAACTGCAAGCTTCAAGAGTTGAGGATCCATCACTGCTATGACCT CGAGGGGGAACCATCAATCCAACACAATGGGATAGCTGTATTGGGATCGATGCGAGTACTTTCTATCTTCGGTTGTGATTCACCCACGATTGGTGCAGTT ATCCGCAACCTGTCGAAGTTTCCGAGGCTCAGGAAACTGGAGCTCAGGTATACGAAATTGGTAGGTCATGAATTAGAAGGTCTTGGTTCCTTGGAAGAGC TGGAGGAGCTTGTGCTGCATGAGCTTTGGTCAATAGAGAGAATTACTTCATTGTCCAAGCTGCAGAAACTGAAGCGTGTAGAAATCTACTATCTGTCTAG TTTGCGGGAGATTGAAGGGCTTGCAGATTTGCAGTCGTTGATATCACTGTCCGTGAGGTTGTGTGAATCGTTGGAGAGACTTTTCGTGCCAACTAAGCAT CGAGAACAAGAACAGAACCCAGTCGCGAATTTGAAGAATTTGCGGTGGGTAGATCTTCGAAAGTCTACGAAATTGAGCGCTGAGGATCTCTCCGCGCTCG AGGCGTGTCCCTCGAGCGTATTCGTACAGTGGCCTGAAAAGCCATTCTCTGATGATGAGTTCTACGCCGTATGA
AA sequence Show only first row Show all	>Lus10007811 pacid=23143583 polypeptide=Lus10007811 locus=Lus10007811.g ID=Lus10007811.BGIv1.0 annot-version=v1.0 MAYIQGVVTVAALVVPLIILYKLWNTRRDRDSNNRSNIDQRHDYVVTSYVMFDSEDLENNHNYGDNNIIKRDFSDSENNNYNNTPNPSNSESLFPSSSSN IDNDNTAPQPSNSESFHPSTSTKSTNENNTPHASNSESLLPSFSSSSSSMNEFAESSNSLSLPSVEYEVFLSFRGPDTRKQFTDILYRFLVHSKIHTFRD DDELRKGEGIWPNLAKAIDQSKIYVPIISKTYAHSKWCLKELAEIVKRQKEDRRCLILPIFYMVDPRDIRHQTGPYEDAFQQYADHFDEKTIQSWKDALS DVGSLKGWHVKSNDEVGAIVDQVYADVWSYLSKDNFVIDTDELVGIDYHIQVLTEKLNLDSDEGVTMVGIHGLGGIGKTTIAKAVYNIFSYQFDRCCFLN DIRETQGQKDGIAILQKKLISDILRKESADIRDENEGRKMIKERVSRHKVLVVLDDVDENFKIEDLLGSPKDFSSGSRFIVTSRNTKILRTLIDNQWQLY EVGAMDHLRSLELFCKHAFKMNSPPSSDYKILSDKIVATTGGLPLTLKVIGSLLFREDIPVWEEKLVQLNETPEFEVMKRLKISFDTLSYEAQQIFLDIA CFFIGTNKEFPCYMWSDCRYYPISNINVLVQKSLLKVGENTEFQMHDQLRDMGREIVRQENIDQPWMRSRIWSDEDALELLSNEKGQNQVKAIRLNSSSL VMDELNNNCFTGLSELRYFDAKSTTLTGDFSNLLPNLRWLRLAEHKNGNRDVANFQMKNLMVLDLQESKINDNWGVWHHIKMAKKLKVLNLEKCDSLRKL PLFPESGSLEILDLSSLELPELDISKLKKLIVLRLKRCTTRKIMGGTIGMMKKLRELDLTGFNFGCEHLREVLADIGQLSDLEILRQTEWVGIRGNHIQE QVLTGIKLPVSLKELGTSSPVPNLEELVKLEKLYVANCMHGVDIPPSSSLWWKVSKLKSLSLRKTKVNPSPSSSSLFPSSLIILEIKNCDKLVWLPTLEN LEDLARFSIKDSHGSTDIHGLAGLKSLQSLELETAYRVRRIHGLEDLMSSPSNCKLQELRIHHCYDLEGEPSIQHNGIAVLGSMRVLSIFGCDSPTIGAV IRNLSKFPRLRKLELRYTKLVGHELEGLGSLEELEELVLHELWSIERITSLSKLQKLKRVEIYYLSSLREIEGLADLQSLISLSVRLCESLERLFVPTKH REQEQNPVANLKNLRWVDLRKSTKLSAEDLSALEACPSSVFVQWPEKPFSDDEFYAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10007811 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Lus10027184 [exp]	1.0	0.9746
AT5G36930			Disease resistance protein (TI...		Lus10007790 [exp]	2.0	0.9680
AT5G36930			Disease resistance protein (TI...		Lus10033953 [exp]	3.9	0.9580
AT5G36930			Disease resistance protein (TI...		Lus10007813 [exp]	4.2	0.9257
AT5G36930			Disease resistance protein (TI...		Lus10000331 [exp]	6.3	0.9383
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10022305 [exp]	7.1	0.9314
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10000548 [exp]	8.9	0.9194
AT3G22400		ATLOX5, LOX5	Arabidopsis thaliana lipoxygen...		Lus10025857 [exp]	9.5	0.9196
AT3G15800			Glycosyl hydrolase superfamily...		Lus10011482 [exp]	9.8	0.9184
AT5G36930			Disease resistance protein (TI...		Lus10007808 [exp]	9.8	0.9198

Compare expression of checked genes

Lus10007811 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.