Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 349 / 2e-102 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G41750 304 / 4e-87 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G17680 304 / 3e-86 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G27170 300 / 1e-84 transmembrane receptors;ATP binding (.1.2) AT1G27180 300 / 3e-84 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G18360 291 / 1e-83 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46270 286 / 2e-80 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41550 283 / 1e-79 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT2G16870 282 / 3e-79 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46260 280 / 2e-78 disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007811 [exp] 924 / 0 AT5G36930 376 / 1e-110 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007808 [exp] 866 / 0 AT5G36930 418 / 1e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007790 [exp] 862 / 0 AT5G36930 343 / 4e-99 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10002247 [exp] 858 / 0 AT5G36930 363 / 1e-108 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10008519 [exp] 853 / 0 AT1G27180 344 / 2e-98 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10012311 [exp] 840 / 0 AT5G36930 354 / 6e-103 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10004719 [exp] 836 / 0 AT5G36930 384 / 3e-113 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007829 [exp] 835 / 0 AT5G36930 330 / 2e-94 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007813 [exp] 833 / 0 AT5G36930 368 / 1e-107 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T002400 [exp] 416 / 7e-129 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G017082 [exp] 414 / 3e-127 AT5G36930 638 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G046000 [exp] 395 / 1e-124 AT5G36930 496 / 1e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002200 [exp] 403 / 5e-124 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 407 / 1e-123 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 405 / 4e-123 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G052000 [exp] 405 / 6e-123 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G007884 [exp] 400 / 3e-121 AT5G36930 654 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.007G142600 [exp] 394 / 7e-121 AT5G36930 535 / 5e-173 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002066 [exp] 396 / 9e-120 AT5G36930 631 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10007812 pacid=23143551 polypeptide=Lus10007812 locus=Lus10007812.g ID=Lus10007812.BGIv1.0 annot-version=v1.0 ATGATTTACGTAATAATAATTGGGATAGTTATTGGGATTATACTTGTTTACAACTACTTTTTTGGGGGAAGAAGGGGAGCATATGGGGACTCCAATGATA GTACTTCTCAACAATCAACTTCGTCTACGATATCTTCCTCTGTTCCTGCCTCTGGAGATTCTGATTCCGTGCCCCTTCCAACGGGGGACTATGAGGTGTT TTTGAGTTTTAGAGGTCCAGATACGCGTCATTATGTCACTGACATTCTCTATCGCTTCCTCCTTAACTTGAAGATCCGCACGTTCAGAGATGATGATGAA CTGCGTAAGGGAGAAGGGATTGGGACAAACCTTCTTCGAGCTATCAGTCAGTCGAAAATCCACGTCCCGATATTGTCCCAGGGTTACGCTCATAGTAAAT GGTGTCTCAACGAGCTTGTTGAGATAATCGAGCAACGTAAGCAGGGTAAAGGGCATATCATACTTCCAATTTTATATCTGATGGATCCTCGAGATGTACG CCATCAAACCGGGCCATACCAAAGTGCATTCAAACAACATAAAAGGAATAAAGTTGACGAAAACACCATACAGAGTTGGAAAGATGCTTTGAACGAGGTC GGAACTTTGAAAGGATGGCACCTCCAAAACAAGGAAGAGGTGGGAGCTTTAGTAGATGAGGTTTCTTCAGTCATATGGTCGCATCTAAGCAAGGAATACA CATTAGATACTGATGAGTTGGTTGGAATTGATAATCATGTCGAGGTTGTCGTGAAAAAGTTAAGTAATAGTTCGGAGGATGTGCGGATGGTTGGTATCAA TGGTCTTGGTGGGATAGGCAAAACCACACTTGCAAAGGCGGTTTACAACAAAATCTCTTATCGTTTCGAACGTTGTTGTTTCGTAGAAAACGTAAGAGAA ACGCAGAAACAGAAGGATGGCACGGTCGTTTTGCAACGGAAGTTAATTTCCGACATATTGAGATCGGTGGATTCTAAAAAAATTAACGATTCCAGTGAAG CCAAGAAAACGATAAGGGAGAGAGTTTCACAGTTTAAATTGCTTGTGGTTCTTGATGATGTGGACGAGAAGTTTAAATTTGAAGACATTTTGGGAAGCCC CGGAGATTTTATTTTCGGGAGTACATTTCTGTTTACTTCCAGAAACATTAAAGTCTTGAGTACTATAAACGAAAGTCGATGCGTCTTGTATGAAGTCGGA GCAATGAGTCATCAACATTCGTTGCAGCTCTTATGCAGGCATGCGTTCCATATGGACTCTCCTCCCTCGGATTACGAAATTGTAGCGAACAAAATTGTGT CGACTACAGGAGGACTTCCATTAACACTGAAGGTTTTGGGGTCGCTTCTGCACAGAGAAGATATAGATTTTTGGGAAGAGAAGTTGTTACAGTTGCAGGG AACGGTCGAGGTTCAAGTCATGGAAAGGTTGAAGATAAGTTATGATGCGCTTCCGTACCAGGCACAACAAATATTTCTGGATGTTGCGTGTTTTTTCATC GGGAAAAGCATAGACATGTCTTCTTATCTGTGGAGCGATTGCAAACTTTATCCCGTTACTAATATTAGGATTCTAGTTCAAAGATCAATGATCAAAATGG GAGATGGCATCGAGTTTCAAATGCATGATCAGCTTAGAGATATGGGTAGAGAAATTGTACGTCAAGAAGATATAGACCGTCCGTGGATGAGGAGTAGAAT ATGGGCCGCAGAAGAAGCCATCGAGACATTGTCCAACAAGAAGGGATCAGATAAAGTTAAAGCAATAAGAGTGGGCACTTCATCCTCCACCTCGATTTCC GTGGAAGAGCTCAGAAGTGAATATTTCTCGAATTTGCCGGAATTAAAATATTTGGACGTTGGATCGTCAACGCTTACAGGAGACTTCAACAATCTTCTCC CAAACATGAGGTGGCTTCGACTGAATCAACAAGCGAATATACAAGATTGCCCGTTTGAAAATTTCGATATGAAAAATGTAGTTATCCTCGATCTCGAGGA TAACTTCATGGACGATGATTGGGGAGGTTGGAGTCAAATCAAGACAGCAGGTAGGCTGAAATATATGGATATTTCTGGTTGTTGGGATATGAAGACAATC CCTTACTTGCCAAGGAGCCTAGAGATTTTCATACTTGGACACTTTTTCAATGATCAAGAGGTATTAAACATTGACGAGTTACAAAAGCTAAAGTGGTTGC TTCTCAAGTGGTCTATATTCGGGGAGATCAAGGGCACCATTGGAATGCTAAAGGATCTTCGATGCCTTGTACTCGTCGAGTTTAAGTGCGGTAACTTGAG GGAATTTCTCGCCGATATTGGAGAATTGCCATCTCTTATATACTTGCATGCAAGTGACGATGGAGTGCTTGAAGAGATTAAGCATCCCGTGAGTTTGAAG GGTGTGAGAACTGGGTCTTCGATCTGTAATCTCGCAGAGATGTCGGAGTTGGAGGATTTGACAATGGAGATGTGTGGAAGTGGGTTAGAGATCCCTTGCG ATTCAGTGTGGTGGAAGGAATCCAAGTTGAAGATACTCACGCTCGAGTCCACAATGATGAGGAGGAGCAGTAGTAGTGGTGGTGATAGTGATAATATGGC AACGATGCTCCTGCCATCTTCGCTAACGAGTCTCGACATTTATGGGAGTCTAGTCTATGTGGAGGGTGAGGAATATGTATGGCTCCCCAGCACTCTGGAG AATCTGGAGAACTTGACCCGGCTATCGTTGAAAAAATGTCCGAACCTCGGAGAGATCCATGGCATAGAGGGTCTGAAATCGTTGGAATCTCTTGAGCTTG ATGACCTATCTAGCTTGACAAGTATCCAGGGCCTTGAACATCTCATCATGTCTTCATCTTCCTGCAGCTCTAGTTGCAAGCTGCAGAAGCTTGTTGTCTC CCGGTGCCAAAATCTCACTCAAGTACTATCGTTCCACGATGTCGATTATAATGACCAAACGGAGGTGAGTTTGCTAGAGATTCCAGAACTTGGGTATTTG AAATCCTTGGTGAGTTTGAGAGTGACGAATTGCCCGTCACTCGAGAGATTGTGGGCTGTAGATCAACAACCGGCGCCCTTCTTGAACAGATTGAAGAACG TGTATCTCAGAAACTGCGGTAAGTTGACGGCAACCGACGAGCTGATCTCTGCTCTAAAGGCAAGTGTTCCGAATGCGAGCGTGGAATGCAAGCAAGACTC ACCTATATGCTCCGTGCAGTAG
AA sequence Show only first row Show all	>Lus10007812 pacid=23143551 polypeptide=Lus10007812 locus=Lus10007812.g ID=Lus10007812.BGIv1.0 annot-version=v1.0 MIYVIIIGIVIGIILVYNYFFGGRRGAYGDSNDSTSQQSTSSTISSSVPASGDSDSVPLPTGDYEVFLSFRGPDTRHYVTDILYRFLLNLKIRTFRDDDE LRKGEGIGTNLLRAISQSKIHVPILSQGYAHSKWCLNELVEIIEQRKQGKGHIILPILYLMDPRDVRHQTGPYQSAFKQHKRNKVDENTIQSWKDALNEV GTLKGWHLQNKEEVGALVDEVSSVIWSHLSKEYTLDTDELVGIDNHVEVVVKKLSNSSEDVRMVGINGLGGIGKTTLAKAVYNKISYRFERCCFVENVRE TQKQKDGTVVLQRKLISDILRSVDSKKINDSSEAKKTIRERVSQFKLLVVLDDVDEKFKFEDILGSPGDFIFGSTFLFTSRNIKVLSTINESRCVLYEVG AMSHQHSLQLLCRHAFHMDSPPSDYEIVANKIVSTTGGLPLTLKVLGSLLHREDIDFWEEKLLQLQGTVEVQVMERLKISYDALPYQAQQIFLDVACFFI GKSIDMSSYLWSDCKLYPVTNIRILVQRSMIKMGDGIEFQMHDQLRDMGREIVRQEDIDRPWMRSRIWAAEEAIETLSNKKGSDKVKAIRVGTSSSTSIS VEELRSEYFSNLPELKYLDVGSSTLTGDFNNLLPNMRWLRLNQQANIQDCPFENFDMKNVVILDLEDNFMDDDWGGWSQIKTAGRLKYMDISGCWDMKTI PYLPRSLEIFILGHFFNDQEVLNIDELQKLKWLLLKWSIFGEIKGTIGMLKDLRCLVLVEFKCGNLREFLADIGELPSLIYLHASDDGVLEEIKHPVSLK GVRTGSSICNLAEMSELEDLTMEMCGSGLEIPCDSVWWKESKLKILTLESTMMRRSSSSGGDSDNMATMLLPSSLTSLDIYGSLVYVEGEEYVWLPSTLE NLENLTRLSLKKCPNLGEIHGIEGLKSLESLELDDLSSLTSIQGLEHLIMSSSSCSSSCKLQKLVVSRCQNLTQVLSFHDVDYNDQTEVSLLEIPELGYL KSLVSLRVTNCPSLERLWAVDQQPAPFLNRLKNVYLRNCGKLTATDELISALKASVPNASVECKQDSPICSVQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10007812 [exp]	0	1
					Lus10039892 [exp]	8.3	0.8975
AT3G53720		ATCHX20	cation/H+ exchanger 20, cation...		Lus10025322 [exp]	9.2	0.8734
AT5G36930			Disease resistance protein (TI...		Lus10007814 [exp]	11.2	0.8816
AT3G08890			Protein of unknown function, D...		Lus10012498 [exp]	11.6	0.8880
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10003396 [exp]	17.2	0.8780
AT5G66740			Protein of unknown function (D...		Lus10026031 [exp]	22.7	0.8565
AT3G15270	SBP	SPL5	squamosa promoter binding prot...		Lus10005548 [exp]	22.9	0.8558
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10037649 [exp]	23.7	0.8118
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10003942 [exp]	25.5	0.8551
AT2G36190		ATCWINV4	cell wall invertase 4 (.1)		Lus10014217 [exp]	27.2	0.8515

Compare expression of checked genes

Lus10007812 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.