Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 345 / 2e-99 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G17680 291 / 8e-81 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G27180 293 / 1e-80 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G27170 286 / 7e-79 transmembrane receptors;ATP binding (.1.2) AT4G16890 274 / 5e-75 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G44510 273 / 5e-75 TAO1 target of AVRB operation1 (.1) AT5G46270 266 / 5e-73 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46450 265 / 1e-72 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G69550 263 / 2e-71 disease resistance protein (TIR-NBS-LRR class) (.1) AT5G46260 254 / 5e-69 disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007813 [exp] 1816 / 0 AT5G36930 368 / 1e-107 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007808 [exp] 1150 / 0 AT5G36930 418 / 1e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007811 [exp] 870 / 0 AT5G36930 376 / 1e-110 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10018658 [exp] 798 / 0 AT1G27180 360 / 4e-106 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10012311 [exp] 791 / 0 AT5G36930 354 / 6e-103 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007829 [exp] 787 / 0 AT5G36930 330 / 2e-94 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10008519 [exp] 779 / 0 AT1G27180 344 / 2e-98 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10004719 [exp] 776 / 0 AT5G36930 384 / 3e-113 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007812 [exp] 762 / 0 AT5G36930 359 / 4e-106 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G143300 [exp] 392 / 9e-115 AT5G36930 519 / 2e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001933 [exp] 373 / 3e-109 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002200 [exp] 363 / 2e-107 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002400 [exp] 362 / 7e-107 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G052000 [exp] 365 / 3e-106 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001602 [exp] 363 / 3e-106 AT5G36930 778 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 362 / 2e-105 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 360 / 7e-105 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002066 [exp] 360 / 8e-105 AT5G36930 631 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T005501 [exp] 360 / 8e-105 AT5G36930 612 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10007814 pacid=23143613 polypeptide=Lus10007814 locus=Lus10007814.g ID=Lus10007814.BGIv1.0 annot-version=v1.0 ATGAGGTATATCGGAGGAGCTGTGACTCTGGCTGCACTTGTTTTCCCGATTATCATTCTTTACAAGCTGTGGAGTACGAGGAGAGATTCGACTAGCAACG ATCGTAACAATATCGAAGACCCATTGTCGTCTTCGGTTGTCACCTCTTATGTCATGTTCGACTCGAAAGATTCCCGAAACAACGATGATGATGACAATAT CGTTCGAGAAACGACCAAGTCATCATCTTCCTCCATGATTGATTGTGAAGATTCAAATGATAATATTCACATTGCAATCACTGAACAACCTCCCTGTGCC ACCTCACCTTCAGCATCTCACTCCGAGAGTTCAAACAACATCAACATCACGCAACAACTCGAGTCAACAGGTGATCATCCTGCTACCCCTTCTGCCTTGT TAGATTCCGCCGGCTCAACATCGCTTCCTTCCGTGGAGTACGAGGTTTTCTTGAGCTTCAGAGGCCCAGACACTCGTTACCAGATTACCGATATCCTTTT CCGTTTCCTCGTTCGTTCCAAAATCCACACGTTTAAGGACGACGATGAAATGCGCAAGGGGGAAGGAATATGGCCTTCGTTGGTTAAAGCTATCAGACAG TCTAAAGTTTATGTTCCGATATTGTCGGAGAATTATGCTCATAGCAAATGGTGTCTTAAAGAGCTTGCTGAGATAGTCAAATGTTGCAAACAAGACAGCA GGCGGCTCATACTTCCCATTTTCTATATGGTGGACCCGAGAGACGTACGCCATCAATCCGGACCTTATGGAGTGGCGTTTAAAAAATACGAGGAAATGGT CGGGGAAATGATCGATCCGTCAGATATAGCGACTTGGAGAAACGCTCTAAAGGAGATCGGAACTTTGAAGGGATGGCATGTGAAGAATAGTAAAGAGTGT GTTACCCTTACCCTACCTTGTGCAGCAATATCAGACGATGTTTCTGAAGTCATATGGTCGCATGTAAGCAAGAGCAATGTCTTGTTAGACGATACTGTAG AGTTGGTTGGAGTTGATGATCACGTAAATGCAGTAGTCGAGAGCCTAAGTTTAGACGACTCTGATGAAAGTACAGTGATGGTGGGCATTCACGGCGCTGG TGGTATAGGGAAGACCACACTCGCGACCGAAGTGTACAAAAAGATTTCTGATCGGTTCGACCGATGTAGTTTTCTCGAAAACATAAGAGAAACCCAACAT CATAAAGATGGTACTCTCACTTTGCAAAAGAAGTTAATCTCAAACATTCTGAGGAAGGATTCTATTGTACTCAATGATGCTCATGAAGGAAGGAAAATTC TGAGAGAGAGAGCTTCCCAGTTCAAAGTTCTCGTGGTCCTCGATGACGTGGATGATAGTTTTAAATTCGACGAAGTTCTAGGAAACGCAGGAAATTTTCT TTCGGGGAGTCGATTCATCGCTACCTCTAGGGACACAGGAGTCTTGAGGAGGCTGGACAGAGAAAAATGCAGACTGTATGAAGTAAAATATATGGACCCT GATCGGTCGCTTCAGCTCTTCTGTAAGCATGCATTCAGAAAGGATTCTCCTCCGCAAGTGTTTGATGCTTTATCTCGGGATATCGTATCTACCACCGGAG GGCTTCCTTTAACACTTAAAGTTGTGGGATCGCTTTTGTACAGGGAAGAGGTGAGCGTTTGGAAGGAGAAGCTCACGCAGTTGGAAGAAACGACCGAGCA AGAGGTGATCGAGAGGTTGAAGATAAGCTATAACGCTCTGGAATATGAAGCACAACAAATATTTCTCGATATTGCTTGTTTTTATATCGGATCGGACAAA CAGATTGTTTCTTACATGTGGCAAGATTGCAACTTCCGTCCTATCATCAATATCAAGATTCTTATCCAGAGATCGATGATCAAGATTGACGACGATAATA GATTCCAAATGCATGATCAACTTAGAGATATGGGCAGAGACGTTGTACGCTGCGAAAATATAGAGATTCCGTGGAAGAGGAGTAGAATATGGTCCGAGCC GGTCATCGAGGAGATGTTACATAACAAAAAGGGAGCAAACCAAGTTAAGGGCATTAGGCTGATCAATTCCTCGTCGTCAGTACGACATATTAAGAGCGAG GGAGTCGTCAATATTTCGGAGATAAGATATCTCGAGGCATCAAACGTACAGTTAAACGGAGACTTCGGTCATCTTCTTCCGAATTTAAGATGGCTTCGTT TGCCCAACCATGCCAATGACGAAGCCTGGCACGGTCGTCTCGCTAATTTACGTATGAAAAATTTGGTGATTCTTGATCTTCGAAATAGCCAAGAGCTACG AGATAAATGGGATGGTTGGCATCATATCAAGGAGGCGAGCAAGCTGAAAGTTTTGGACATTTCCAACTGTAAAAAGTTGAAGGAACTTCCCGGATTTCCG GAATCCGGGAGTATTGAGATTCTGAATCTGACCGATTTTGGTCGGTCACCGGGTGGGGAGCTAAACATAGGCAAGTTGAGGAACCTACAAGTGTTGAAGA TGAGTCGAGCTTGGATAAGGAAGATAAAGGGCGGGAAAATCGGAATCATTTCGAGGCTTCGAGAGCTTGATGTCTCGTACTGTCGGTGTGAGAATCTGGG CGAAGTTCTCGTCGATGTCGATAAACTAACATGTCTGAAAATCTTGAGAGCGGCCGGAACAGGACCACGTGCTTTGGCCGGGAAGCATCTCCCCACAGGT TTGAAAGAGCTCTCCACTTGTTCTCAGGTTCCCAATCTTTCAGAAATGTCGGAGCTAGAGACATTAATCGTCGAGGACTGTCGCGAAGGACTCGACATTC CACAAAATGATGACACGAAGCTATCCAAATTAAACTTCTTGAAACTCGTGAACACGAAAATCAACAGTCTCCCAACATCGGTCAGCAACCTGTCGCGCCT TCAGATTTTCAACTGCGAAGAATTGGAGTGGATGCCGAGTCTAGCCAACCTGGAGAACCTGGACGAATTAGAGATCAAGGGGTGTCCGAATCTACGAGAG ATCCAAGGTCTCGGTGGGTTGAAATCGTTAACAAACCTCCGCTTATCGGGTTCAAAAACCCTAACCCATCTCGACCTTGCCGGTCTCCTTTCCTTTAATA AGTTAAAATGGTTGACTATATCACGGTGCCTACTTCTCGCATCTGTGACGTTTAGTGACAGATGTGAGAAGGACTTGGGCGAAGCAGTCGTGGACTCGCT GGAAGGACTAGCGATCCACGACTGCCCATCCATGGAGCTTGCCGGGGAGGTACTGCCTCACCTGTGCAAGTTCCCAAAGCTTACCGGCTTGACATTGGGA GGCTTCGTCGACTGCGAAGTACTAACTCTTCCAGCATGTCTGGAAGAGTTAGTTGTACTAGAACTATCCAACATACGGTCGACCCGGGTGATAAATTTTT CGTCGAAGCTACGAAAGCTTACGCTTTTAGTCATATGGAGTCTGCGGAGTTTGCGGGAGATCGGGGGGCTTTCGGAGTGCAAGTCTTTGAAAACTATAAT GCTACTCAGTTGTACCTCTTTGGAAAAATTCGAAGTGTCCGGTTTAGAGCAATTGGACGCTCTGAATATAACGGGAGGATGCAGAGCGTTGGAGAGGCCG CCTTCCCTCGTGAATCTCCCGAATCTGCGAGTACTGTCCTTCGAAAGGCTTGTGAATCTACGGGAGATCAGAAACGATGAGATTGCGGGTTTGAAGTGTT TGGAAGAACTGGGTTTCGCAGGATGCCAGGCACTGGAAAGACTTCCGGTCGAACCACTGGCTGGTTTGGATAAATTAAGGGTACTCAACATTCAAGGATG TCACAGGTTGAATGTTGATGGTATCAAGAATGGTCTGCCCAATGTACAAGAAATCATAGCAGATAACATGGTGAGCTGGATTGTAACCAAACCCTTCTTT TCGGTTCTAAATTGGGCTGAGAGGTTGGGTGACACGGTTGATAATGTCTTTCCGAGTCCGAGTTTAGTTCTAGATGATGGAGACCCTACAACAACAATTG GCTCTGGAGACAGTAGTTATTTGTTTCTAAATGATACTAGCAGTAATGTTCGACAACGTTGGCCGAATTGA
AA sequence Show only first row Show all	>Lus10007814 pacid=23143613 polypeptide=Lus10007814 locus=Lus10007814.g ID=Lus10007814.BGIv1.0 annot-version=v1.0 MRYIGGAVTLAALVFPIIILYKLWSTRRDSTSNDRNNIEDPLSSSVVTSYVMFDSKDSRNNDDDDNIVRETTKSSSSSMIDCEDSNDNIHIAITEQPPCA TSPSASHSESSNNINITQQLESTGDHPATPSALLDSAGSTSLPSVEYEVFLSFRGPDTRYQITDILFRFLVRSKIHTFKDDDEMRKGEGIWPSLVKAIRQ SKVYVPILSENYAHSKWCLKELAEIVKCCKQDSRRLILPIFYMVDPRDVRHQSGPYGVAFKKYEEMVGEMIDPSDIATWRNALKEIGTLKGWHVKNSKEC VTLTLPCAAISDDVSEVIWSHVSKSNVLLDDTVELVGVDDHVNAVVESLSLDDSDESTVMVGIHGAGGIGKTTLATEVYKKISDRFDRCSFLENIRETQH HKDGTLTLQKKLISNILRKDSIVLNDAHEGRKILRERASQFKVLVVLDDVDDSFKFDEVLGNAGNFLSGSRFIATSRDTGVLRRLDREKCRLYEVKYMDP DRSLQLFCKHAFRKDSPPQVFDALSRDIVSTTGGLPLTLKVVGSLLYREEVSVWKEKLTQLEETTEQEVIERLKISYNALEYEAQQIFLDIACFYIGSDK QIVSYMWQDCNFRPIINIKILIQRSMIKIDDDNRFQMHDQLRDMGRDVVRCENIEIPWKRSRIWSEPVIEEMLHNKKGANQVKGIRLINSSSSVRHIKSE GVVNISEIRYLEASNVQLNGDFGHLLPNLRWLRLPNHANDEAWHGRLANLRMKNLVILDLRNSQELRDKWDGWHHIKEASKLKVLDISNCKKLKELPGFP ESGSIEILNLTDFGRSPGGELNIGKLRNLQVLKMSRAWIRKIKGGKIGIISRLRELDVSYCRCENLGEVLVDVDKLTCLKILRAAGTGPRALAGKHLPTG LKELSTCSQVPNLSEMSELETLIVEDCREGLDIPQNDDTKLSKLNFLKLVNTKINSLPTSVSNLSRLQIFNCEELEWMPSLANLENLDELEIKGCPNLRE IQGLGGLKSLTNLRLSGSKTLTHLDLAGLLSFNKLKWLTISRCLLLASVTFSDRCEKDLGEAVVDSLEGLAIHDCPSMELAGEVLPHLCKFPKLTGLTLG GFVDCEVLTLPACLEELVVLELSNIRSTRVINFSSKLRKLTLLVIWSLRSLREIGGLSECKSLKTIMLLSCTSLEKFEVSGLEQLDALNITGGCRALERP PSLVNLPNLRVLSFERLVNLREIRNDEIAGLKCLEELGFAGCQALERLPVEPLAGLDKLRVLNIQGCHRLNVDGIKNGLPNVQEIIADNMVSWIVTKPFF SVLNWAERLGDTVDNVFPSPSLVLDDGDPTTTIGSGDSSYLFLNDTSSNVRQRWPN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10007814 [exp]	0	1
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10032103 [exp]	2.0	0.9513
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10022304 [exp]	4.6	0.9341
AT4G24250		ATMLO13, MLO13	MILDEW RESISTANCE LOCUS O 13, ...		Lus10042397 [exp]	7.5	0.9360
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10030576 [exp]	8.4	0.9186
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10014580 [exp]	8.4	0.9286
AT1G79430	GARP	WDY, APL	WOODY, ALTERED PHLOEM DEVELOPM...		Lus10001754 [exp]	8.9	0.9284
AT5G67550			unknown protein		Lus10011544 [exp]	9.2	0.9338
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10022306 [exp]	9.5	0.9187
AT3G16030		CES101	CALLUS EXPRESSION OF RBCS 101,...		Lus10009582 [exp]	9.8	0.9197
AT1G29380			Carbohydrate-binding X8 domain...		Lus10004600 [exp]	10.5	0.9314

Compare expression of checked genes

Lus10007814 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.