Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 299 / 3e-84 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27180 277 / 3e-76 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G27170 266 / 8e-73 transmembrane receptors;ATP binding (.1.2) AT5G17680 261 / 3e-71 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G72840 247 / 2e-67 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT2G16870 242 / 2e-65 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT3G04220 235 / 3e-64 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G18360 233 / 2e-63 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G49140 233 / 4e-63 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41540 232 / 2e-62 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007825 [exp] 1618 / 0 AT5G36930 318 / 2e-89 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007828 [exp] 1233 / 0 AT5G36930 319 / 7e-92 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007829 [exp] 1179 / 0 AT5G36930 330 / 2e-94 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10012311 [exp] 1142 / 0 AT5G36930 354 / 6e-103 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10004747 [exp] 1097 / 0 AT5G36930 342 / 3e-99 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007823 [exp] 1071 / 0 AT1G27170 322 / 3e-92 transmembrane receptors;ATP binding (.1.2) Lus10040576 [exp] 1042 / 0 AT1G27180 355 / 3e-103 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10007831 [exp] 1019 / 0 AT1G27180 332 / 7e-96 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10033953 [exp] 1004 / 0 AT5G36930 347 / 2e-102 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T002200 [exp] 360 / 2e-107 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.007G143300 [exp] 365 / 1e-106 AT5G36930 519 / 2e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002400 [exp] 354 / 4e-105 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001602 [exp] 356 / 8e-105 AT5G36930 778 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001933 [exp] 356 / 2e-104 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.003G014200 [exp] 351 / 9e-103 AT5G36930 673 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G052000 [exp] 352 / 1e-102 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 349 / 5e-102 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002300 [exp] 349 / 5e-102 AT5G36930 635 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 348 / 8e-102 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10007821 pacid=23143550 polypeptide=Lus10007821 locus=Lus10007821.g ID=Lus10007821.BGIv1.0 annot-version=v1.0 ATGAATTACTTAACTGGAATTGCGACGGTTGCTGCAATTATGGTTTTCTATAAGCTGTTTCTGGAAAGGAAGGGCCGCAGCGGTGAGGAATCAGTCAACG ATGTTTCTCAACAATCAAACTCTACAGCAGCATCTTCTTCTATTACTCATGTCTCTGAAGAGGAATCAATCAACAATGTTTCTCAACAATCAAACTCTAC AGAAGCATCTTCTTCTAGACATGTCTCTGAAGCGGAATCAATCGATTATGTTCCTCAACAATCACACTATACATATTCGACACCATCCACGGAGCCACTT CCAGTCGAGGAGTATGAGGTGTTTTTGAACTTCAAAGGAATGGATACACGCGACTCTATTACTGATATTCTCTATCGTTTCCTTGTCCGATCAAAAATCC GCACCTTCCAAGACGACGGAGGACTTCGTAAGGGAGAAGAAATATGGGAAAACACTGCAAAAGTCATCCATCAGTCACAGATTTTTATTCCTATTTTCTC GCATGGTTATGCTGAGAGCAAATGGTGTCTCCGAGAACTCGCTGAGATTGTCAAACATACAAAACGAGAGAAAAAGTGCATCATACTTCCCATTTTTTCT GAAGTGAACCCCAAAGACGTACGTTATCAAACTGGGCCTTATAAAAAGGCATTTGATAAGCATAAGAGAAACCACATCGATGATGACACATTAACGAGTT GGAGAGCGGCTATGAATGAGGTTGGATCGTTGAAAGGATGGCACATCCAAAATAGAAGAGAGGTGGGAGAAGTAGCAGATATTGTTACTGGCGTTGTATG GTCACATTTAAACAAAAATAATTATGCTTTGGAGACTGATGATTTAGTTGGAATCGATGACCAAATAAAACAAGTGGTAAATCTGCTAAATCTAGGATAT GAAGGTGTAGATGTCGTTGGCCTCCATGGGATTGGCGGTATTGGCAAGACCACTATTGCCACCGCAGTCTATAACAAAATTTCTTTAGACTTTGATCGAT GTAGTTTTGTTGCGAATATACGTGAAACACAACAGAAGGACGGCGTTTTCGTTTTGCAAAAGAAGTTTATCTCTGATATCTTAGGGGGGGACTTAGTTCA ATCAGTTGTTGGAGTCGGTAACACGAAGAAAATTATAAGAGAACGAGTTTCCCGGTTTAAAATCCTTGTGGTTCTTGATGACGTAGATGAAACGTTCAAC TTTAAGGAAGTTTTAGGAGATCCTGAATGGTTTTTTCCTGGAAGTCGGTTTATCATCACATCTAGAAACATTAAAGTATTGAAGGGAATACAAGGTCAAA ACAAGTTGTACGAAGTTCAAGAAATGAACCATGCTCACTCGCTTCAATTATTCTGCAAGCACGCATTCAGAATGGATTCCCCTCTCCCGGGTTTCGAGGA TTTATCCGAAAAGATAGTATCCACCACAGGACGACTTCCATTGACACTTAAGGTTATAGGGTCAATTCTTTTCCGAGAAGAAGAAGCTGTTTGGAAAGCC AAATTGAAGCAGTTGGAGACACAACCTGAAAAAAGAGTGTTGGATAGGTTAATAATTAGCTATGAAGCTTTACAATATAAAGCACAACAAATATTCTTAG ATATAGCTTGTTTCTACATTGGAAAAAATAAAGAAATTGCTTCTTACATGTGGAGTGACTGCAACTTTTATCCGATCAGCAACATCAATGATCTAGTTCA AAGGTCAATGCTCAAAATTGGGGATCGTAATGAGTTTCAGATGCACAATCAACTTAGAGATATGGGCAGAGAAATAGTTCGTAAAGAAAATATAGAACAT TCATTGATGAAAACCAGAATCTGGGGGAATGACGAAGCTCTTCATCTCCTGCTTAACAATCAGGGAACAAAGCAAGTTGAAGCCATTAAAGTAAACTCAC CAAGTTCTGCTGTTTGGGAGCTTGGAAGTGAAAGCTTTATGAATTTGTCAGAGTTGAGATATTTTCACGCAACGGGCAGGGAGATGAAAGTAGACTTCAA CCATGTCCTTCCGAACTTGAAATGGCTTGAACTGGAAGCAAGCCGGATTAACAACTTCAATATGGAAAAACTTGTCATATTTGCTGTCCACGGACTAGAA CATGATTCAGGAATTAAGCATGCAATCAAGCTGAAAGTTCTAAATCTTCACGGGTGTTCCGAGCTGAGTAAACTTCCGGAATTTCCAGAATCAAGGAGGC TAGAGATGTTACACATTGATCATTTCGAAAACAGACAGGAAAATCTGGAAATTGGAAAACTGCACAACCTAACAAGTCTGGAATTGCAGCACTGTAAATT TGGCAAGATCCAAGGGGGCACCATAGGTATGATGGAGAGGCTTAAGGAGCTCCATGTCTCCGTCGACTTCGAATGTGATTTTAATAGTTTCAGACAAGCG ATTGCCGATATCGGGGTGCTATCGTCACTTCAAGTCTTGAATGTTAACAGTCCTCATCTGGTAGATGTTTTAGAAGGGATTAAGCTACCAAAGAGTTTGA AGTTTCTACATACCGCATCCGGTTTCGATAATCTCGAAGAGCTATTGGATTTGGAGGAGCTGGATGTTAATGGAACTCGGATGAGCCTCGTGATCCCACA CACTATTATGCGGGACCAGTTGAAATCAATGAGGCTTTACTCCATGGAGGGGATTTTTATGGCTGAAAGTGATGGCAGTACCATGCTACTACCATCATCT CTAACTAGGCTACATATCCGGTGTCTAAAATCGGATCAGTTTCCAAATCTGAATGATCTTGGGAACTTGACTGAATTAGTACTATGGGATTGTCCTAATC TGCAAGAGATCCAGGGTCTCGGAGGGTTGAATTCATTGCAGCTCCTCGTGATAGTTGCAGCTGGGAAATTAACTCGTATCGACGGCCTTGGAGAACTCAT GTCTTCTACCGAATGCAGATTGAAAGAGTTGCAGATTATTGATTGCCCCCTTCTTCCTACATTGCTAACATACGAACAAAGAGAGAATGATTCGGTACGA AACGAATCTTTACTCGCATTGCGGATCAAGGGAGCGCCACTTCTGGATGGTAAATCCATACCAAAACTGTCAAAGTTTCCAAGGCTCAAGGAGTTGGAAA TCGGCGAAATCAGTTTGAACATCGACAGTGAAGAATCCGCTACCCAGCTGCTGGAAGGTCTCGAGAATCTTAAATACTTAGTTGAACTGAAGGTGCACAA TTTGCCCAAAGTACAGAGGCTTCCTTCTCTGTCGAAGCTAAGCATGTTGGAGAACTTGGCGTTAGAAGACCTTTCGGGTTTACGACAGATTGATGGATTG GGAGAGTTGAAGTTGTTGAGATCGATAGAAGTGCAGCGATGCTTTTCGCTGGAAAGATTTCCAGTCGCGGTGGATCTACCCTACTACTACGGTATGAGTC GTATAATGCTGGACTTGAGAGGATGCACAAACTTTGCTAACGTGAATTCAGATCTCGCACCCCTCGCTGATTTGGATATGCATAACCTCACCATCCACTG GCCAGATGAACCCTTGGAGTGGTGGATGGCCCCATGA
AA sequence Show only first row Show all	>Lus10007821 pacid=23143550 polypeptide=Lus10007821 locus=Lus10007821.g ID=Lus10007821.BGIv1.0 annot-version=v1.0 MNYLTGIATVAAIMVFYKLFLERKGRSGEESVNDVSQQSNSTAASSSITHVSEEESINNVSQQSNSTEASSSRHVSEAESIDYVPQQSHYTYSTPSTEPL PVEEYEVFLNFKGMDTRDSITDILYRFLVRSKIRTFQDDGGLRKGEEIWENTAKVIHQSQIFIPIFSHGYAESKWCLRELAEIVKHTKREKKCIILPIFS EVNPKDVRYQTGPYKKAFDKHKRNHIDDDTLTSWRAAMNEVGSLKGWHIQNRREVGEVADIVTGVVWSHLNKNNYALETDDLVGIDDQIKQVVNLLNLGY EGVDVVGLHGIGGIGKTTIATAVYNKISLDFDRCSFVANIRETQQKDGVFVLQKKFISDILGGDLVQSVVGVGNTKKIIRERVSRFKILVVLDDVDETFN FKEVLGDPEWFFPGSRFIITSRNIKVLKGIQGQNKLYEVQEMNHAHSLQLFCKHAFRMDSPLPGFEDLSEKIVSTTGRLPLTLKVIGSILFREEEAVWKA KLKQLETQPEKRVLDRLIISYEALQYKAQQIFLDIACFYIGKNKEIASYMWSDCNFYPISNINDLVQRSMLKIGDRNEFQMHNQLRDMGREIVRKENIEH SLMKTRIWGNDEALHLLLNNQGTKQVEAIKVNSPSSAVWELGSESFMNLSELRYFHATGREMKVDFNHVLPNLKWLELEASRINNFNMEKLVIFAVHGLE HDSGIKHAIKLKVLNLHGCSELSKLPEFPESRRLEMLHIDHFENRQENLEIGKLHNLTSLELQHCKFGKIQGGTIGMMERLKELHVSVDFECDFNSFRQA IADIGVLSSLQVLNVNSPHLVDVLEGIKLPKSLKFLHTASGFDNLEELLDLEELDVNGTRMSLVIPHTIMRDQLKSMRLYSMEGIFMAESDGSTMLLPSS LTRLHIRCLKSDQFPNLNDLGNLTELVLWDCPNLQEIQGLGGLNSLQLLVIVAAGKLTRIDGLGELMSSTECRLKELQIIDCPLLPTLLTYEQRENDSVR NESLLALRIKGAPLLDGKSIPKLSKFPRLKELEIGEISLNIDSEESATQLLEGLENLKYLVELKVHNLPKVQRLPSLSKLSMLENLALEDLSGLRQIDGL GELKLLRSIEVQRCFSLERFPVAVDLPYYYGMSRIMLDLRGCTNFANVNSDLAPLADLDMHNLTIHWPDEPLEWWMAP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10007821 [exp]	0	1
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Lus10015018 [exp]	1.0	0.9779
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10006463 [exp]	2.0	0.9750
					Lus10017917 [exp]	3.9	0.9754
AT1G21000			PLATZ transcription factor fam...		Lus10002700 [exp]	4.2	0.9714
AT2G36950			Heavy metal transport/detoxifi...		Lus10022617 [exp]	4.9	0.9708
AT2G23790			Protein of unknown function (D...		Lus10016799 [exp]	5.0	0.9738
AT5G41810			unknown protein		Lus10003901 [exp]	5.7	0.9760
AT5G53110			RING/U-box superfamily protein...		Lus10032382 [exp]	7.5	0.9603
AT5G39820	NAC	ANAC094	NAC domain containing protein ...		Lus10007263 [exp]	8.1	0.9660
AT2G37050			Leucine-rich repeat protein ki...		Lus10019237 [exp]	8.4	0.9711

Compare expression of checked genes

Lus10007821 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.