Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11170 84 / 3e-16 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G36930 81 / 2e-15 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G11250 75 / 2e-13 Disease resistance protein (TIR-NBS-LRR class) (.1) AT5G41540 74 / 4e-13 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G18370 72 / 2e-12 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41750 71 / 3e-12 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G18360 70 / 4e-12 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G58120 70 / 5e-12 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G38340 69 / 1e-11 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT3G25510 68 / 3e-11 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007826 [exp] 1060 / 0 AT5G11250 85 / 8e-17 Disease resistance protein (TIR-NBS-LRR class) (.1) Lus10007829 [exp] 912 / 0 AT5G36930 330 / 2e-94 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007823 [exp] 844 / 0 AT1G27170 322 / 3e-92 transmembrane receptors;ATP binding (.1.2) Lus10007831 [exp] 497 / 3e-160 AT1G27180 332 / 7e-96 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10004747 [exp] 496 / 2e-159 AT5G36930 342 / 3e-99 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007825 [exp] 467 / 3e-148 AT5G36930 318 / 2e-89 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10012311 [exp] 460 / 4e-145 AT5G36930 354 / 6e-103 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007821 [exp] 448 / 2e-141 AT5G36930 339 / 4e-98 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007830 [exp] 407 / 3e-131 AT5G36930 120 / 5e-28 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T002200 [exp] 105 / 7e-23 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G019710 [exp] 102 / 2e-22 AT5G36930 445 / 2e-144 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G019053 [exp] 102 / 7e-22 AT5G36930 655 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G017082 [exp] 101 / 1e-21 AT5G36930 638 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G046000 [exp] 100 / 2e-21 AT5G36930 496 / 1e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002066 [exp] 99 / 6e-21 AT5G36930 631 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G052000 [exp] 97 / 3e-20 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 97 / 3e-20 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002300 [exp] 97 / 4e-20 AT5G36930 635 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002428 [exp] 95 / 4e-20 AT5G36930 387 / 2e-122 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10007822 pacid=23143556 polypeptide=Lus10007822 locus=Lus10007822.g ID=Lus10007822.BGIv1.0 annot-version=v1.0 ATGGAACCTCAGAAGGAAACAGAGAGAGCTCCTCAGAAGGAAACCGAGACAGTTCCAATCGGGGAGTATGAGGTGTTCTCAAACTTCAGACCATCCGATA CACGTTATTATAAAGGCGACGAAGAACTTCGTAAGGGAGAAGGAATATGGCACAACGTCGTTAAAACCATCTATCCGTCGCAGATTTCTATTCCAGTCTT CTCGCTCTTTTATGCTCAGAGCAAGTATTGCCTCAAGGAACTTGTTGAGATTACTGGGTACCGGAAGCGAGATAAAGGGCACCTCATACTTCCATTTTTT TATCCTGGAGACATAACTGGGCCTGCATTTGATGAGGAGGCAGCTCTAGGAGCCCATGTTTCTGGCCCTGCATGGTTAGATTTAATCAACAATAACTATG CATTAGAGATTGATGAGTTAGTTGGAACCGATGACCAAGTAGAACGAGTGGTCGATTGGCTAAATCTAGGATCTCAAGGTGTAGATGTAGTTGGCCTCCA CGATATTGGTGCTGTTGGCAATACCGCCATTGCCACTGCGGTCTATAACAAAATTTCTTCCAGCTTTAATTGCTATAATTTTGTTGAGAATATACGCGAA GCACAACAAGAAAAGGACGGCGGTCTCGTTGTGAGAAGGGAAATTGTCCGTCGAGAAAATATTGAACAACCATGGATGAGAAGCAGGATATGGCCAGGCA AGGAAACTATTGAACTACTAAACAAGTGTAAGAATCAAGTTAAAGGCATTAGAGTGAACTCAGGAAGTGACGATGTTCCAGAGCTTGATAGTGCATGTTA TACGGAGTTGTCAGAGTTGAGATATTTTGATGCAGGGGAAACAAGGTTGAATGGAGATTTCAATAATCTTCCTCCTCCAAACTTAAAATGGATGCAACTA CAAAATCATATCCGAAGTTCAGGGTACAGTATGCCAAACTTCAATATGAAAAAGGTCATCATGTTTGATGTTAATGCCGAAGGATTGGGAGATGACTGCA TCCAGACCAAGGAGGCAGAAAAGTTACAAGTCTTACACCTTCCAAACTGTAGGAATATGAGTAAACTTTCGGAATTTCCAAGATCGGGAAACTCAGATAT GTTACGTATCGATCATTTCAAGAACAGAGGGGCAGATATTGATTTCGAGGAACTGCGGAACCTAAAAGAACTGAAGTTGGTGTCTTGTGAACTAGGGAAG TTCAAAGCTGGCACCATAGGGACAATGAAGGAGCTTCGGGAGCTGAATCTCCACAACAGCAATTGCAATTTCGATAGTTTCAGAGGAGCGATTGCTGATA TCGGGGAGCTTTCATCTCTTGAAATCTTGAATGTCAAAAGTCATTATCTGGCGGATGTTTTGGAAGGGGTTAAGCTACCTAAAAGCTTGAAGTATATGAT CACTCAATCTGGTTTTGCTAACATTGAGGAGCTGATGGAGTTGGAGGAATGCATTATTATCGGAAGTAGTATGAAGACGACGGAGCTTGTGATCCCTCCA GCCTTTGACGATAGCGCGGACGAAAGTAGCGTTATTCCGTGGATTAATTCGTCCAAGTTGAAAGTCATGAAGCTCCACTCCGTGAAGAAGATAGTTATGG TTGATAGTAAGCGCACCATGCTACCATCATTGCTTACTACGCTACACATTCATAAGCTGTACTCAGAGCAGCTTCCGAATTTGAAGAATCTCGTGAACCT GACTGAATTAGAAATCAAGGATTGCCCCAATCTCGAAGAGGTTCATGGCCTTGGAGGGATGAAATCATTGCAGATTCTCCGCATTTACAATGCCGGGAAA TTAACCTGGATCCACGGCCTTGGAAATCTAATGTCTTCTTCTAGCTGCAGGTTGACAAATTTGGAGATACACAAATGTCCACTTCTCCGTGCAGTTCTAA CATTTGAACAACAACGAGACTATAATGGTGGTGCTGGAAGAGACACCGATTTAGTACGAATCGAGTCTTTACTGAATCTCGAAATCTCCGGATGCCAATC CTTGGATGGTAGATCAATCCCCAGACTGTCCAAGTGTCCAAAGATTAAGGTGTTAAGGATCGAGGAAATCCAATGGAACATCAACTCCAAAACAGCCATC CAACAATATCAGCTGCTGGAGGGGCTCGAGAATCTCGAAGAGTTAGTTTCGCTAACGGTACATCATTTACCGAAAGTACAGAGACTGCCTTCACTGTCGA AGCTAATCAAGTTGAGTTACTTAAGCTTGCAAGACCTTCCGAGTTTGCTAGAGATTGCGGGACTTGGAGAGCTGAAGATGTTAAGACAGTTAAAGGTTAG TAGGTGTCTTTTGTTGGAAAGATTGTCCGTTGCAGATCTGCCCCTCTTGACTATGTATCGTATTGAGTTAGACTTGAGGGAATGCACAAACTTAGTTGAT GTCAACTCTGATCTTTCCCCCCTGACCGACACGACGAGAGGAGGGGATCTCGGAAAACTCAAAGTAATCATCCGTTGGCCGCATGAACACGAGGAGGTGA TTGAGAAAAACTTGCTCTTCTGTCCGCAGCGTTTCTTGTGGAGCCACTAG
AA sequence Show only first row Show all	>Lus10007822 pacid=23143556 polypeptide=Lus10007822 locus=Lus10007822.g ID=Lus10007822.BGIv1.0 annot-version=v1.0 MEPQKETERAPQKETETVPIGEYEVFSNFRPSDTRYYKGDEELRKGEGIWHNVVKTIYPSQISIPVFSLFYAQSKYCLKELVEITGYRKRDKGHLILPFF YPGDITGPAFDEEAALGAHVSGPAWLDLINNNYALEIDELVGTDDQVERVVDWLNLGSQGVDVVGLHDIGAVGNTAIATAVYNKISSSFNCYNFVENIRE AQQEKDGGLVVRREIVRRENIEQPWMRSRIWPGKETIELLNKCKNQVKGIRVNSGSDDVPELDSACYTELSELRYFDAGETRLNGDFNNLPPPNLKWMQL QNHIRSSGYSMPNFNMKKVIMFDVNAEGLGDDCIQTKEAEKLQVLHLPNCRNMSKLSEFPRSGNSDMLRIDHFKNRGADIDFEELRNLKELKLVSCELGK FKAGTIGTMKELRELNLHNSNCNFDSFRGAIADIGELSSLEILNVKSHYLADVLEGVKLPKSLKYMITQSGFANIEELMELEECIIIGSSMKTTELVIPP AFDDSADESSVIPWINSSKLKVMKLHSVKKIVMVDSKRTMLPSLLTTLHIHKLYSEQLPNLKNLVNLTELEIKDCPNLEEVHGLGGMKSLQILRIYNAGK LTWIHGLGNLMSSSSCRLTNLEIHKCPLLRAVLTFEQQRDYNGGAGRDTDLVRIESLLNLEISGCQSLDGRSIPRLSKCPKIKVLRIEEIQWNINSKTAI QQYQLLEGLENLEELVSLTVHHLPKVQRLPSLSKLIKLSYLSLQDLPSLLEIAGLGELKMLRQLKVSRCLLLERLSVADLPLLTMYRIELDLRECTNLVD VNSDLSPLTDTTRGGDLGKLKVIIRWPHEHEEVIEKNLLFCPQRFLWSH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11170			Disease resistance protein (TI...		Lus10007822 [exp]	0	1
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10029180 [exp]	7.7	0.8704
AT1G02860		BAH1, NLA	nitrogen limitation adaptation...		Lus10030375 [exp]	14.4	0.8892
AT1G27170			transmembrane receptors;ATP bi...		Lus10005171 [exp]	16.1	0.8827
AT1G69550			disease resistance protein (TI...		Lus10007827 [exp]	21.9	0.8295
AT1G24095			Putative thiol-disulphide oxid...		Lus10030833 [exp]	22.7	0.8282
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Lus10043309 [exp]	29.4	0.8818
AT3G15290			3-hydroxyacyl-CoA dehydrogenas...		Lus10012681 [exp]	38.4	0.8671
AT1G19270		DA1	DA1 (.1)		Lus10018789 [exp]	40.6	0.8498
AT2G44180		MAP2A	methionine aminopeptidase 2A (...		Lus10000403 [exp]	46.7	0.8619
AT5G49520	WRKY	ATWRKY48, WRKY4...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10017067 [exp]	54.8	0.8539

Compare expression of checked genes

Lus10007822 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.