Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 322 / 2e-92 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 310 / 2e-87 transmembrane receptors;ATP binding (.1.2) AT1G27180 285 / 9e-79 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G17680 247 / 6e-67 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G46270 239 / 2e-64 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G63870 236 / 1e-63 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G58120 234 / 5e-63 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G69550 232 / 5e-62 disease resistance protein (TIR-NBS-LRR class) (.1) AT1G63880 230 / 5e-62 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT2G16870 228 / 7e-61 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007829 [exp] 1736 / 0 AT5G36930 330 / 2e-94 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10004747 [exp] 1139 / 0 AT5G36930 342 / 3e-99 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007821 [exp] 1133 / 0 AT5G36930 339 / 4e-98 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10012311 [exp] 1105 / 0 AT5G36930 354 / 6e-103 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10040576 [exp] 1038 / 0 AT1G27180 355 / 3e-103 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10007825 [exp] 1020 / 0 AT5G36930 318 / 2e-89 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10000423 [exp] 988 / 0 AT1G27180 338 / 5e-95 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10033953 [exp] 983 / 0 AT5G36930 347 / 2e-102 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007822 [exp] 902 / 0 AT4G11170 86 / 7e-17 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T005501 [exp] 375 / 2e-111 AT5G36930 612 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001602 [exp] 374 / 4e-111 AT5G36930 778 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002400 [exp] 370 / 4e-111 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002200 [exp] 358 / 5e-107 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002066 [exp] 362 / 1e-106 AT5G36930 631 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 359 / 7e-106 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G004599 [exp] 359 / 8e-106 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T011750 [exp] 360 / 9e-106 AT5G36930 551 / 2e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001600 [exp] 357 / 3e-105 AT5G36930 721 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 357 / 4e-105 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10007823 pacid=23143578 polypeptide=Lus10007823 locus=Lus10007823.g ID=Lus10007823.BGIv1.0 annot-version=v1.0 ATGGAACCTTCTCAACAACAGTCGTATTCGATAACATCTACGGAGCCACTTCCGATCGGGGAGTATGAGGTGTTTCTGAACTTCAGAGGACCGGATACAC GTGATTATATTACTGATACTCTCTATCGCTTTCTCGCTCGCTCCAAAATCCGCACGTTCAGAGACGAGGAAGAACTCCGTAAGGGAGAAGCAATATGGCC CAACCTCGTTAAAGCCATCCACCAGTCGCAGATTTCTATTCCCATCTTCTCGCCCCGTTATTGTGAGAGCAAGTACTGCCTTAAGGAACTTGTTGAGCTC AACGAGCACCGGAAGCGAGAGAAAGGTCACATCATGCTTCCGATTTTCTACCTGGTTGACCCCGGAGACGTACGCCATCAGACCGGGGATGATTATAAGA AGGCCTTTGATGAGCATAAGAGAAAAAAGATCGATGAGAAGGAATTGGAACGTTGGAGAGTGGCCATGAATGAGATTGGAACGTTGAAAGGATGGCACGT CAAAAATAAAACAGAGACTCCGCCGAAATCCTTCGAATTCCTTGGCAATGATTTCCTGAAGTTGCAAAAGAATTTTGTTTCGTACAGGGAGGTAGCTGTA GCTGATGTTGTTTCTGGAGCTGTATGGTCACATTTAATTAAGAATAACTATGCGGTAAAGACTAATGCGTTTGTTGGGATCGAAGACCAAGTAAAACGAG TGGTAGATCGGCTAAATCTAGCATCTCAAGGTGTAGATATAGTTGGCCTCTACGGTCTTGGTGGTATTGGCAAGACCACAATTGCCACTGCGGCCTATAA CGAGGTTGCTTCACTCTTTGAACACAGTTTTTTCGTTAGGGATATACGTGAAGCACAACAACAAAAAGATGGGATTCTCGGTTTACAAAAGAAGTTTATC TCCAATATCTTAGGGGAAAATTCAGTTAGACCTATTACTGAAGTCACAGTCGCAAAAAATATCATAGAAACTCGAGTTTCCAAGTATAAAATCCTCGTGG TTCTCGACGATGTAGATGAAAAGTTCAACTTTAAGGAAGTCATAGGAGATCCAAAAATCTTCAAGGCAGGAAGTCGGTTTATCATGACATCTAGAAACAT AAAAGTTTTGGGGAAGACAATTAAAGACGAAGATAAGTTGTATGACGTTCAAGGGTTGGATGATTATCACTCGCTTCAATTGTTCTACAAGCATGCATTC CAAAAGGATTCTGCTGACCAGGGTTTTGAGGGCATATCTAAAGAGATAGTATCAAAAACAGGAAATCTTCCACTGGCACTTCAAATTGTAGGGTCAAGTC TCTACGACGAAAGAATGGCTGTTTGGAAAGAAAAACTTGAGCAGTTACAGAGACGACAGCCAGATAAAGGTGTAATGGATAGCTTGGAAATTAGCTATCT TGATTTAGGACGCCATATAGGACGTCAAGCACAAGAAATATTCTTGGATATAGCTTGTTTCCTCATTGGGAAAGATCAAGAAACGGCGTCTTACATGTGG AAAGATTGCAACAGTTCTCCTATCAGTAACATCAGTGCGCTGGTTCAGAGATGTATGCTCAAAATTGGGGACCGTAATGAGTTTCAGATGCATGATCTAA TTAGAGATATGGGCAGAGAAATTGTCCGTCGAGAAAAACCATGCAATAGAAGCAGGATATGGCCAGATGATGAAGTTATCGAGCTAATAAACAAGTGTAA GGATAAAGTTGAAGGCATTAGAGTGAACTCGGGAAGTGATGATGTTCCAGAGCTAGATAGTGCATGTTTTCCCAAGTTGTCGGAGTTGAGATATTTTGAT GCAGGGAAAGCGAGGTTGAATGGAGATTTCAGTAATCTTCTTCCAGACTTAAAATGGATGCAACTGCAAAATCACAATGGAATACCAAACTTGAATATGA AAAAGATTGTCATATTTGATGTTAATGTCCAAGGACTGGGAGATGACTGCATCCAAACTAAGGAGGCAAATAAGTTAAAAGTTCTACTCCTTCCCAATTG TAGCAATATGAGTAAACTTCCAGAATTTCCTGAATCGGGAAGCTTGGAGGTGTTACGCATCGATCATTTCAAGAACAAAGAGGAAGATATGAATATTGAG AAACTGCGGAACATAAAAGTACTCAAGTTAGTTTCTTGCGAGCTACGAAAGATCAAAGGTGGAACCATGGGGATGATGAAGGAGCTTCGGGAGCTGAATC TCCACAACATTAATTGCAATTTCAATAGTTTCAGAGACGTTATTGCCGATATCGGGGAGCTGTCATCTCTCGAAATCTTGAATGTCAGAAGTCATTATCT GGCGGATGTTTTGAAAGGGATAAAGCTACCTAAAAGCTTGAAGTATCTGCTCACTCAATCCGGTTTTGCTAACATTCAGGAGCTGATGGCGTTGGAGCAA ATCGTTATCATCGGAAGCAGCATGAAGACGACAGAGCTTGTGATCCCTCAATCCTTCGACAGTAGAGGGGACGAAAGTACAATTATTCCGTGGATTAATT CGTCCAAGTTGAAATCCATGAAGCTCCAGTCCATAAAGAGGATAGTTATGGATGATAGTAAGCTCACCATGCTACCATCATCCCTTACCAAGCTGCAAAT TTGGTATCTAGATTCAGAGCAGCTTCCGAATTTAAAGAATCTTGGGAACCTGACTGAATTGGAAGTCAAGGATTGCCCCAATCTTAAAGAGATTCACAGC CTTGGAGGGATGACATCGTTGCAGATTCTCCGAATAGTCAATGCCGGAAACTTAACATCCATCAATGGCCTTGGAAATCTAATGTCTTCTTCTAGCTGCC GGTTGACAAATTTGGAGATAAACAAATGTCCACTTCTTCGTGCAGTTTTAACATTTGATGATGGAAGAGAGACCGATTTAGTACGAATCGAGTCTCTACT CAATATCGAAATCCACGGATGCCAATCCGTGGACGGTAGATCGATACCAAGACTGTCCAAGTATCCAAAAATTAAGGTGTTCAGAATTGAGGGAATCCAT GTGAACATCAGCAAGAAGGCAGCCAGCCAGCAATACCAGCTGCTGGAAGGGCTCGAGAATCTCGAAGAGTTGGTTTCGCTAACGGTACATCATTTACCGA AAGTACAGAGACTGCCTTCGCTGTCGAAGCTGATCAACCTGAGCTACTTGAGCTTGCGAGACCTTCCGAGTTTGCGAGAGATTGAAGGACTTGGAGAGTT GAAGATGTTGAAACAGTTAAAAGTGAGTAGATGCAAGTCGTTGGAAAGATTGTCCGTCGCGTATCTTCCATTGTCGACTATGTATCGTATGGAGTTGGAC TTGAGAGGATGCACAAACTTCATCAACGTCGAATCTGATCTTTCTCCCCTCAAAGAACCGAGGGGAGGGGATCTCGGAAAACTTGAAGTAATCATCCATC GGCCGAATGAACCCGAGGAGGAGATCGAGACGAACTTGGTCTCCAAGCCAACACGTTACTTGTGGAGCCACTAG
AA sequence Show only first row Show all	>Lus10007823 pacid=23143578 polypeptide=Lus10007823 locus=Lus10007823.g ID=Lus10007823.BGIv1.0 annot-version=v1.0 MEPSQQQSYSITSTEPLPIGEYEVFLNFRGPDTRDYITDTLYRFLARSKIRTFRDEEELRKGEAIWPNLVKAIHQSQISIPIFSPRYCESKYCLKELVEL NEHRKREKGHIMLPIFYLVDPGDVRHQTGDDYKKAFDEHKRKKIDEKELERWRVAMNEIGTLKGWHVKNKTETPPKSFEFLGNDFLKLQKNFVSYREVAV ADVVSGAVWSHLIKNNYAVKTNAFVGIEDQVKRVVDRLNLASQGVDIVGLYGLGGIGKTTIATAAYNEVASLFEHSFFVRDIREAQQQKDGILGLQKKFI SNILGENSVRPITEVTVAKNIIETRVSKYKILVVLDDVDEKFNFKEVIGDPKIFKAGSRFIMTSRNIKVLGKTIKDEDKLYDVQGLDDYHSLQLFYKHAF QKDSADQGFEGISKEIVSKTGNLPLALQIVGSSLYDERMAVWKEKLEQLQRRQPDKGVMDSLEISYLDLGRHIGRQAQEIFLDIACFLIGKDQETASYMW KDCNSSPISNISALVQRCMLKIGDRNEFQMHDLIRDMGREIVRREKPCNRSRIWPDDEVIELINKCKDKVEGIRVNSGSDDVPELDSACFPKLSELRYFD AGKARLNGDFSNLLPDLKWMQLQNHNGIPNLNMKKIVIFDVNVQGLGDDCIQTKEANKLKVLLLPNCSNMSKLPEFPESGSLEVLRIDHFKNKEEDMNIE KLRNIKVLKLVSCELRKIKGGTMGMMKELRELNLHNINCNFNSFRDVIADIGELSSLEILNVRSHYLADVLKGIKLPKSLKYLLTQSGFANIQELMALEQ IVIIGSSMKTTELVIPQSFDSRGDESTIIPWINSSKLKSMKLQSIKRIVMDDSKLTMLPSSLTKLQIWYLDSEQLPNLKNLGNLTELEVKDCPNLKEIHS LGGMTSLQILRIVNAGNLTSINGLGNLMSSSSCRLTNLEINKCPLLRAVLTFDDGRETDLVRIESLLNIEIHGCQSVDGRSIPRLSKYPKIKVFRIEGIH VNISKKAASQQYQLLEGLENLEELVSLTVHHLPKVQRLPSLSKLINLSYLSLRDLPSLREIEGLGELKMLKQLKVSRCKSLERLSVAYLPLSTMYRMELD LRGCTNFINVESDLSPLKEPRGGDLGKLEVIIHRPNEPEEEIETNLVSKPTRYLWSH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27170			transmembrane receptors;ATP bi...		Lus10007823 [exp]	0	1
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Lus10038639 [exp]	1.7	0.8291
AT3G44480		COG1, RPP10, RP...	recognition of peronospora par...		Lus10007455 [exp]	3.5	0.8163
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10037087 [exp]	4.9	0.7821
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10035704 [exp]	8.9	0.7586
AT4G24290			MAC/Perforin domain-containing...		Lus10015324 [exp]	9.9	0.7561
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10037086 [exp]	12.7	0.7591
AT2G23770			protein kinase family protein ...		Lus10022488 [exp]	18.9	0.7487
AT3G13600			calmodulin-binding family prot...		Lus10016052 [exp]	19.1	0.7318
AT4G12010			Disease resistance protein (TI...		Lus10016029 [exp]	23.6	0.7219
AT4G00330		CRCK2	calmodulin-binding receptor-li...		Lus10017787 [exp]	25.1	0.7600

Compare expression of checked genes

Lus10007823 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.