Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27180 300 / 1e-83 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G36930 294 / 2e-82 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 283 / 2e-78 transmembrane receptors;ATP binding (.1.2) AT5G17680 263 / 5e-72 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G41540 243 / 7e-66 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G58120 239 / 7e-65 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G12010 237 / 1e-63 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT2G16870 236 / 1e-63 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G38340 234 / 5e-63 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT3G04220 229 / 3e-62 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007821 [exp] 1631 / 0 AT5G36930 339 / 4e-98 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007828 [exp] 1381 / 0 AT5G36930 319 / 7e-92 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10012311 [exp] 1102 / 0 AT5G36930 354 / 6e-103 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007829 [exp] 1081 / 0 AT5G36930 330 / 2e-94 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10004747 [exp] 1071 / 0 AT5G36930 342 / 3e-99 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10040576 [exp] 1003 / 0 AT1G27180 355 / 3e-103 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10033953 [exp] 988 / 0 AT5G36930 347 / 2e-102 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007831 [exp] 979 / 0 AT1G27180 332 / 7e-96 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10007823 [exp] 978 / 0 AT1G27170 322 / 3e-92 transmembrane receptors;ATP binding (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T002400 [exp] 368 / 3e-110 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001602 [exp] 364 / 2e-107 AT5G36930 778 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002200 [exp] 358 / 9e-107 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 358 / 3e-105 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.007G142600 [exp] 353 / 4e-105 AT5G36930 535 / 5e-173 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.007G143300 [exp] 361 / 6e-105 AT5G36930 519 / 2e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 357 / 1e-104 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002066 [exp] 356 / 2e-104 AT5G36930 631 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.005G206400 [exp] 350 / 7e-104 AT5G36930 587 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G017082 [exp] 352 / 1e-103 AT5G36930 638 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10007825 pacid=23143608 polypeptide=Lus10007825 locus=Lus10007825.g ID=Lus10007825.BGIv1.0 annot-version=v1.0 ATGAATTACTTAACTGGAATTGCGACGATTGCTGCAATTATGGTTTTCTATAAGCTGTTTCTGGAAAGGAAGGGCCGCAGCGGTGAGGAATCAGTCAACG ATGTTTCTCAACAATCAAACTCTACAGCAGCATCTTCTTCTATTACTCATGTCTCTGAAGAGGAATCAATCGACGATGTTCCTACTTCAGCACCGAGGGG GAGGCTAACAAGAGCGAAAAGAGCTGACGACATTACTTCTCAACAACAATTATATTCGACAACATCTACGAAGCCACTTCCGATCGGGGAGTATGAGGTG GTTTTGAGTTTTGCAGGTTCGGGTACTCATAATCGTATTGTTGATATTCTCCATCGATCTCTCACTCAGATGAAAATTAGTACGTTCAGAGCCGATAATG AACTCGGATTTAAAATTTGGCCCAAGCTTTTGCAAGCCCTCGGTGAGGCAAAGATTTATATTCCTGTCATCTCGCCAAGCTATGCTCAAAGCAAGTGGTG CCTTACAGAACTGGCTGAAATTGTTGAGCACTATCAGCGAGATGGAAGACATATCATACTTCCCATCTTTTATATGGTGGATCCCCGAGACGTGTGCAAT CAAACTGGAGCTTTAAAAAATGCATTTCAACAACATAAAAGAACTAACGTTCATGAAGAGACCATACAAAGTTGGAAAGATGTTTTGCGTGTAGTTGGAT TTTCGAGAGGGTGGCACATCAAAACCAAAGTAAGGGAGGTTGATGTTGCGGAACATGTTTCTCGACTTGTAGGGTCAATTCTTGAGAAGGATAACCTTTT TGGAATTCCGGTGGAGCAAATAGAAGAGATGGTAGATCTAGGACAATCGATTGTTCATACGGACGACTTGGTTGGAATTGATAACCAGGTAGAACAACTA AAAGATATGTTAGATCTAAGCTCGGAAGGCGTGAATCTAGTTGGCGTTCATGGCATGGGTGGTATTGGAAAGACCACTCTTGCAAAAGCTGTTTATAATG AAGTTTTCACCCGTTTTGACCGTTGTTGTATGCTGGACAATATACGAGAAGTACAACAACAACCCGATGGTGTTCTCCTTTTACAACAGAGCTTAATATC TCATATCTTAAGGATGGACTCATCAATTGCTAACGTTCATGACGCAAAGAAACTCATACGAGATAGGGTTAGCCAATTCAAGATCCTTGTGGTTCTTGAT GACATAGATGAAAACTTCAACTTTGAGGAAGTCTTTGGAAATCCACGATTTTTTGCTCCAGGAAGTCGTTTTATCATCACGTCGAGACACGTGAATGCCC TAATGAGGTTAATTGAAGATGAAAGCAAGTTGTACGAAGTTCAAGGAATGAATCCTACTCAATCGCTTCAATTATTTTGCAACCACGCGTTCAGAAACGA TGTTCCTCTGGCCGGTTTTGAGGCATTATCGAAAGACATTGTATCTAGTATTGGAGTGCTTCCATTGACTCTTAAGGTTCTAGGCTCGGCTCTCTTCGGA CAAGACAAAGATTTGTGGACAGCAAAATTGGAGCAGTTGCAAGAAATGCCAGAAGAAGGTGTAATAGGCAGATTAATAATTAGCTATGATAGTCTACAAT ATGAAGCGCGACATATTTTTCTAGATATAGCATGCTTCCACATCGGAAAAAATAAAGAAATTGCTTCTTACATGTGGAGCGATTGCAACTTTTATCCCAT GATCAACATCAATGTTCTAGTTCAAAGGTCTATGCTTAAAATTGGGGATCGTAGTGAGTTTCAGATGCATGATCAACTTAGAGATATGGGCAGAGAAATT GTTCGTAGAGAAAGTACAGAACATCTATGGAAAAGAAGCAGAATCTGGTCGAATGAGGAAGCTGTTGATCTCTTGCGTTATCTCTTCAATCAGGGAACAA ACCGAGTTAGAGGCATTAAAGTAAACTCACCAAGTTCTGTTGTTTGGGATCTTGGAAGTGAAACCTTTACGAATTTGTCAGAGTTGAGATATTTTCACGC AACGGGCAGGGAGATGAAAGTAGACTTCAACCATGTCCTTCCGAACTTGAAATGGCTCGAGTTGGAAGCCAGCCGGATTAACAACTTCAATATGAAAGAA CTTGTCATATTTGCAGGCCACGGATTAGAACATGATTCCGGAATTAAGGAGGCAAGCAAGCTGAAAGTTCTAAATCTTCACGGGTGTTCCGAGCTGGAAA AAATTCCAGAATTTCCACGATCTGGGAGCCTAGAGATGTTACACATTGATCATTTCGAGAACAGACAGGAAAATCTGGAAATTGGAGAACTGCACAACCT AAAAAGTCTGAAATTGCAGCGCTGTAAACTTGGAAGGATCCAAGGGGGCACCATCGGTATGATGGAGAGGCTTAAGGAGCTACACGTCTCAGTCGACTTT GAATGCAATTTTGATAGTTTCAGGCAAGTGATTGTCGACATCGGGAAGCTGTCGTCGCTTGAAGTCTTGAATGTTAACAGTCCTCATCTGGAAGATGTTT TAGAAGGGATTAAGCTACCAAAGAGTTTGAAGTTTCTACATACTGCATCTGGTTTCGATAATCTCGAAGAGCTATTGGATTTGGAGGAGCTGGATGTTAA TGGAACTCGGATGAGAGTTGTCATCCCGCACACTATTATGCAGGACCAGTTGAAATCGATGAGGCTTTACTCCATGGAGGGGATTTTTATGTCTGGAAGT GATGGCAGTACCATGCTACTACCATCATCTCTAACTAGGCTACATATCCGGTGTCTAAAATCGGAGCAGTTCCCGAATCTGAATGATCTGGGGAACTTGA CTGAATTAGCACTATGGGATTGTCAGAATCTGCAAAAGATCCATGGTCTCGGTGGGTTGAAATCATTGCAGATCCTCATTATAGTTACAGCGGGGAAATT AATTCGAATGGACGGCCTTGGAGATCTCATGTCTTCTACCAAATGCAGATTGCAAGAGTTGGAGATCATTGATTGCCCGCGTCTTCCTACATTACTAACA TACGAACAAAGAGAGAATGATTCGGTACGAATCGAATCTTTACTCGCATTGCGGATCAAGGGAGCGCTACTTCTGGATGGTAAATCCATACCAAAACTGT CAAAGTTTCCAAGGCTCAAGGAGTTGGAAATCGGCGAAATCAGTTTGAACATCGACAGTGAAGAATCTGCTACCCAGCTGCTGGAAGGTCTCGAGAATCT TAAATACTTAGTTGCTTTGAAGGTGCACGATTTGCCCAAAGTACAGAGGCTTCCTTCTCTGTCGAAGCTAAGCATGTTGGAGAACTTGGCGTTAGAAGAC CTTTCGGGTTTACGACAGATTGATGGATTGGGAGAGTTGAAGTTGTTGAGATCGATAGAAGTGCAGAGATGCTTTTCGCTGGAAAGATTTCCAGTCGCGG CGGATCTACCCTACTACTACGGTATGAGTTGTATAAAGCTGGACTTGAGAGGATGCACAAACTTTGCTAACGTGAATTCAGATCTCGCTCCCCTCGCCGA TTTGGATATGCATAACCTCACTATCCACTGGCCAGATGAACCCTTGGAGTGGTGGATGGCCCCATGA
AA sequence Show only first row Show all	>Lus10007825 pacid=23143608 polypeptide=Lus10007825 locus=Lus10007825.g ID=Lus10007825.BGIv1.0 annot-version=v1.0 MNYLTGIATIAAIMVFYKLFLERKGRSGEESVNDVSQQSNSTAASSSITHVSEEESIDDVPTSAPRGRLTRAKRADDITSQQQLYSTTSTKPLPIGEYEV VLSFAGSGTHNRIVDILHRSLTQMKISTFRADNELGFKIWPKLLQALGEAKIYIPVISPSYAQSKWCLTELAEIVEHYQRDGRHIILPIFYMVDPRDVCN QTGALKNAFQQHKRTNVHEETIQSWKDVLRVVGFSRGWHIKTKVREVDVAEHVSRLVGSILEKDNLFGIPVEQIEEMVDLGQSIVHTDDLVGIDNQVEQL KDMLDLSSEGVNLVGVHGMGGIGKTTLAKAVYNEVFTRFDRCCMLDNIREVQQQPDGVLLLQQSLISHILRMDSSIANVHDAKKLIRDRVSQFKILVVLD DIDENFNFEEVFGNPRFFAPGSRFIITSRHVNALMRLIEDESKLYEVQGMNPTQSLQLFCNHAFRNDVPLAGFEALSKDIVSSIGVLPLTLKVLGSALFG QDKDLWTAKLEQLQEMPEEGVIGRLIISYDSLQYEARHIFLDIACFHIGKNKEIASYMWSDCNFYPMININVLVQRSMLKIGDRSEFQMHDQLRDMGREI VRRESTEHLWKRSRIWSNEEAVDLLRYLFNQGTNRVRGIKVNSPSSVVWDLGSETFTNLSELRYFHATGREMKVDFNHVLPNLKWLELEASRINNFNMKE LVIFAGHGLEHDSGIKEASKLKVLNLHGCSELEKIPEFPRSGSLEMLHIDHFENRQENLEIGELHNLKSLKLQRCKLGRIQGGTIGMMERLKELHVSVDF ECNFDSFRQVIVDIGKLSSLEVLNVNSPHLEDVLEGIKLPKSLKFLHTASGFDNLEELLDLEELDVNGTRMRVVIPHTIMQDQLKSMRLYSMEGIFMSGS DGSTMLLPSSLTRLHIRCLKSEQFPNLNDLGNLTELALWDCQNLQKIHGLGGLKSLQILIIVTAGKLIRMDGLGDLMSSTKCRLQELEIIDCPRLPTLLT YEQRENDSVRIESLLALRIKGALLLDGKSIPKLSKFPRLKELEIGEISLNIDSEESATQLLEGLENLKYLVALKVHDLPKVQRLPSLSKLSMLENLALED LSGLRQIDGLGELKLLRSIEVQRCFSLERFPVAADLPYYYGMSCIKLDLRGCTNFANVNSDLAPLADLDMHNLTIHWPDEPLEWWMAP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10007825 [exp]	0	1
AT1G21000			PLATZ transcription factor fam...		Lus10002700 [exp]	4.2	0.9627
AT1G04920		ATSPS3F	sucrose phosphate synthase 3F ...		Lus10016657 [exp]	5.9	0.9596
AT2G23790			Protein of unknown function (D...		Lus10016799 [exp]	6.9	0.9614
AT5G36930			Disease resistance protein (TI...		Lus10007828 [exp]	7.6	0.9373
AT3G27020		YSL6	YELLOW STRIPE like 6 (.1)		Lus10032024 [exp]	8.4	0.9556
AT5G51970			GroES-like zinc-binding alcoho...		Lus10031659 [exp]	10.8	0.9610
AT5G48060			C2 calcium/lipid-binding plant...		Lus10015709 [exp]	10.8	0.9534
					Lus10017917 [exp]	11.1	0.9606
AT1G77210		AtSTP14	sugar transport protein 14, su...		Lus10022421 [exp]	12.0	0.9563
AT5G36930			Disease resistance protein (TI...		Lus10007821 [exp]	12.1	0.9595

Compare expression of checked genes

Lus10007825 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.