Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11170 84 / 2e-16 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G36930 83 / 3e-16 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G18360 78 / 1e-14 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G11250 76 / 5e-14 Disease resistance protein (TIR-NBS-LRR class) (.1) AT5G41540 72 / 5e-13 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G18370 72 / 1e-12 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G63870 71 / 1e-12 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT3G25510 71 / 3e-12 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G63880 69 / 5e-12 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41750 69 / 7e-12 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007822 [exp] 1090 / 0 AT4G11170 86 / 7e-17 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10007829 [exp] 600 / 0 AT5G36930 330 / 2e-94 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007823 [exp] 544 / 0 AT1G27170 322 / 3e-92 transmembrane receptors;ATP binding (.1.2) Lus10004747 [exp] 336 / 2e-102 AT5G36930 342 / 3e-99 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10033953 [exp] 323 / 1e-98 AT5G36930 347 / 2e-102 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007831 [exp] 321 / 3e-97 AT1G27180 332 / 7e-96 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10007828 [exp] 318 / 2e-96 AT5G36930 319 / 7e-92 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007825 [exp] 311 / 4e-93 AT5G36930 318 / 2e-89 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10012311 [exp] 307 / 2e-91 AT5G36930 354 / 6e-103 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T002200 [exp] 110 / 4e-25 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G019710 [exp] 109 / 4e-25 AT5G36930 445 / 2e-144 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002300 [exp] 109 / 1e-24 AT5G36930 635 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G019053 [exp] 108 / 2e-24 AT5G36930 655 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G017082 [exp] 108 / 2e-24 AT5G36930 638 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G016425 [exp] 107 / 4e-24 AT5G36930 650 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002066 [exp] 107 / 4e-24 AT5G36930 631 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 107 / 7e-24 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G052000 [exp] 106 / 1e-23 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002400 [exp] 105 / 2e-23 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10007826 pacid=23143594 polypeptide=Lus10007826 locus=Lus10007826.g ID=Lus10007826.BGIv1.0 annot-version=v1.0 ATGGAACCTCAGAAGGAAACCGAGACAGTTCCAATCGGGGAGTATGAGGAGTTTTCAAACTTCAGAGCATCCGATACACGTTATTATATAGACGAGGAAG AACTTCGTAAGGGAGAAGGAATATGGCACAACGTCGTTAAAGCCATCTATCAGTCGCAGATTTCCATTCCTGTCTTCTCGCGCCTTTATGCTCAGAGCAA GTATTGCCTCAAGGAACTTGTTGAGATTACTGGGTACCGGAAGCGAGAGAAAGGGCACATCAGACTTCCATTTTTTTATCCTGGAGACGTTACTGGGCCT GCATTTTATGAGGAGGCAGTTCTAGGAGACCTTGTTTCTGGGCCTGCATGGTTAGATTTAATCAACAAGAACTATGCATTAGAGATTGATGAGTTAGTTG GAACCGATGACCAAGTAGAACGAGTGGTAGATTGGCTAAATCTAGGATCTCAAGGTGTAGATGTAGTTGGCTTCCACGATATTGGTGGCGTTGGCAATAC CACCATTGCCACTGCGGTCTATAACAAAATTTCTTCCAGCTTTAATTGCTATAATTTTGTTGAGAATATACACGAAGCACAACAAGAAAAGGACGGTGGT CTCGTTGTGAGAAGAGAAGTTGACCGTCGAGAAAATATTGAACAACCATGGATGAGAAGCAGGATATGGCCAGGCAAGGAAGCCATTGAGCTACTAAACA AGTGTAAGAATCAAGTTAAAGGCATTAGAGTGAACTCAGGAAGTGATGATGTTCCAGAGCTTGATAGTGCATGTTATACGGAGTTGTCAGAGTTGAGATA TTTTGATGCAGGGGAAACAAGGTTGAATGGAGATTTCAGTAATCTCCCTCCTCCAAACTTAAAATGGGTGCAACTACAAAATCATATTCGAAGTTCAGGG TACAGTATGCCAAACTTCGATATGAAAAAGGTCATCATGTTTGATGTTAATGCTGAAGGATTGGGAGATGACTGCATCCAGACCAAGGAAGCAGAAAAGT TACAAGTCTTACACCTTCCAAACTGTAGGAATATGAGTAAACTTTCGGAATTTCCAAGATCGGGAAACTCGGATGTGTTACGCATCGATCATTTCAAGAA CAGAGAGGCAGATATGGATTTCGAGGAACTGCGGAACCTAAAAAAACTGAAGTTGGTGTCTTGTGAACTAGGGAAGTTCAAAGGTGGCACCATAGGGACG ATGAAGGAGCTTCGGGAGCTGAATCTCCACAACAGCAATTGCAATTTCGATAGTTTCAGAGGAGCGATTGCTGATATCGGGGAGCTTTCATCTCTTGAAA TCTTGAATGTCAAAAGTCATTATCTGGCGGATGTTTTGGAAGGGGTTAAGCTACCTAAAAGCTTGAAGTATATGATCACTCAATCTGGTTTTGCTAACAT TGAGGAGCTGATGGAGTTGGAGGAATGCATTATTATCGGAAGTAGTATGAAGACGACAGAGCTTGTGATCCCTCCAGCCTTTGACGATAGGGCGGACGAA AGTAGCGTTATTCCGTGGATTAATTCGTCCAAGTTGAAAGTCATGAAGCTCCACTCCGTGAAGAAGATAGTTATGGTTGATAGTAAGCGCACCATGCTAC CATCATTGCTTACTACGCTACACATTCATAAGCTGTACTCAGAGCAGCTTCCGAATTTGAAGAATCTGAGGAACCTCACTGAATTGGAAATCAAGGACTG CCCCAATCTTCAAGAGATTCACGGCCTTGGTGGGACGAAATCATTCTCGAAATCTCCGGATGCCAATCCTTGGATGGTAGATCAATCCCCAGATTGTCCA AGTGTCCAAAGATTAAGGTGTTAA
AA sequence Show only first row Show all	>Lus10007826 pacid=23143594 polypeptide=Lus10007826 locus=Lus10007826.g ID=Lus10007826.BGIv1.0 annot-version=v1.0 MEPQKETETVPIGEYEEFSNFRASDTRYYIDEEELRKGEGIWHNVVKAIYQSQISIPVFSRLYAQSKYCLKELVEITGYRKREKGHIRLPFFYPGDVTGP AFYEEAVLGDLVSGPAWLDLINKNYALEIDELVGTDDQVERVVDWLNLGSQGVDVVGFHDIGGVGNTTIATAVYNKISSSFNCYNFVENIHEAQQEKDGG LVVRREVDRRENIEQPWMRSRIWPGKEAIELLNKCKNQVKGIRVNSGSDDVPELDSACYTELSELRYFDAGETRLNGDFSNLPPPNLKWVQLQNHIRSSG YSMPNFDMKKVIMFDVNAEGLGDDCIQTKEAEKLQVLHLPNCRNMSKLSEFPRSGNSDVLRIDHFKNREADMDFEELRNLKKLKLVSCELGKFKGGTIGT MKELRELNLHNSNCNFDSFRGAIADIGELSSLEILNVKSHYLADVLEGVKLPKSLKYMITQSGFANIEELMELEECIIIGSSMKTTELVIPPAFDDRADE SSVIPWINSSKLKVMKLHSVKKIVMVDSKRTMLPSLLTTLHIHKLYSEQLPNLKNLRNLTELEIKDCPNLQEIHGLGGTKSFSKSPDANPWMVDQSPDCP SVQRLRC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11250			Disease resistance protein (TI...		Lus10007826 [exp]	0	1
AT1G06410		ATTPSA, ATTPS7	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10029258 [exp]	2.8	0.8281
AT1G67170			unknown protein		Lus10035371 [exp]	8.8	0.7840
AT5G17930			MIF4G domain-containing protei...		Lus10014048 [exp]	11.0	0.8033
AT2G31290			Ubiquitin carboxyl-terminal hy...		Lus10003062 [exp]	16.4	0.7859
AT5G27860			unknown protein		Lus10020665 [exp]	18.9	0.7628
AT3G19190		ATATG2	autophagy 2 (.1)		Lus10014045 [exp]	20.9	0.7958
AT4G20850		TPP2	tripeptidyl peptidase ii (.1)		Lus10027482 [exp]	26.7	0.7987
AT4G29380		AtVPS15	Arabidopsis thaliana vacuolar ...		Lus10043037 [exp]	27.7	0.7883
AT3G56830			Protein of unknown function (D...		Lus10030290 [exp]	30.2	0.7672
AT5G42940			RING/U-box superfamily protein...		Lus10018725 [exp]	36.0	0.7792

Compare expression of checked genes

Lus10007826 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.