Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 314 / 3e-90 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 277 / 7e-77 transmembrane receptors;ATP binding (.1.2) AT5G17680 273 / 1e-75 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G27180 269 / 3e-74 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G18360 255 / 3e-71 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT2G16870 254 / 5e-70 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G11250 252 / 4e-69 Disease resistance protein (TIR-NBS-LRR class) (.1) AT5G18350 248 / 1e-67 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G44510 241 / 2e-65 TAO1 target of AVRB operation1 (.1) AT5G41540 238 / 1e-64 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007825 [exp] 1313 / 0 AT5G36930 318 / 2e-89 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007821 [exp] 1276 / 0 AT5G36930 339 / 4e-98 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10012311 [exp] 978 / 0 AT5G36930 354 / 6e-103 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10004747 [exp] 964 / 0 AT5G36930 342 / 3e-99 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10033953 [exp] 961 / 0 AT5G36930 347 / 2e-102 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007829 [exp] 916 / 0 AT5G36930 330 / 2e-94 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10040576 [exp] 884 / 0 AT1G27180 355 / 3e-103 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10007831 [exp] 866 / 0 AT1G27180 332 / 7e-96 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10000423 [exp] 837 / 0 AT1G27180 338 / 5e-95 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T002400 [exp] 354 / 4e-106 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.007G143300 [exp] 356 / 3e-104 AT5G36930 519 / 2e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002200 [exp] 347 / 1e-103 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001602 [exp] 349 / 5e-103 AT5G36930 778 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G052000 [exp] 350 / 9e-103 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001933 [exp] 348 / 2e-102 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002066 [exp] 347 / 4e-102 AT5G36930 631 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 345 / 2e-101 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G017082 [exp] 343 / 3e-101 AT5G36930 638 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 344 / 4e-101 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10007828 pacid=23143574 polypeptide=Lus10007828 locus=Lus10007828.g ID=Lus10007828.BGIv1.0 annot-version=v1.0 ATGTTCAGAATCTCAGATCGTCGTGATTCCGCTACTGATTTGTACTGTGTATGTTGTGTAGGAGGAGGAGTAATGAATTACTTAACTGGAATTGCGACGG TTGCTGCAATTATGGTTTTCTATAAGCTGTTTCTGGAAAGGAAGGGCCGCAGCGGTGAGGAATCAGTCAATGATGTTTCTCAACAATCAAACTCTACAGC AGCACGTTCTTCTCTTCATGTCTCGGGAGGTTCTGATTTCTTTCCCACCGGGGAGTACGATGTGGTTTTGAGTTTTGCAGATCAGGATCTTCGTCGCAAT CGTTTTATTGAGATTCTCTATCACTCTCTCACTCAGATGAAAATTCGCACATTCATAGCCGATAACGAACTCCTCAATGGGGAAGAAATGTGGCCCGATC TTTTCCAAGCTCTCAGTCGGTCAACGATTTATATTCCTGTCATCTCGCAAAGCCATGCTCAAAGCAAGTTCTGCCTTACCGAACTGGCTGAAATTGTTAA GCACAGACGGCGAGAAAAGAGCCCTATCATATTGCCGATCTTTTATCAGGTGGACCCCCGAGACGTAAGCCATCAAACCGGGCCTTTCGGAAATTCATTT GAACAACTTAAAAGAACTAACGTTGATGCAGAGACCATACAAAGTTGGAGAGCGGCTTTGTTTAAGGTTGGAAATTTGAAAGGGTGGCACATCAGCACCG AAAAAAGAGAGGTTGATGTTGCCGAAAGTGTTACTCGAGAGATATGGTCGCTTCTTGAGAGTGATAACTTGGTTGGAATTGATAATCAGGTGGAACAAAT AGAACATATGCTAGATCTTGACTCTGGCGGTGTGAATATAGTTGGCATTCATGGCATGGGTGGTGTTGGAAAGACCACTCTTGCGAAAGCTGTCTATGAT AAAATCTTTTTTCGTTTTGATCGTTATGGTATTCTGGAAGATATACGAGATACACAAAAACAAAAGGATGTTGTTGAAGTTAGTGAAGCAAATAGACTCA TACAAGAGAGAGTTACGCAATTCAAGATCCTTGTGTTTCTTGACGATGTAGATGAAGAGTTCCACTTTGACGAAGTCTTGGGAAAGCAAAATTTTTTTGC TTCAGGAAGTCGTTTTATCATCACGTCGAGAAACATGAAAGTTCTGATGAGGTTAATTGAAAGTCGAAGCAAGTTGTACGAAGTTCAAGGAATGAATCCT AGTCAATCGCTTCAACTATTTTGCAAGTACGCATTTAAAAAGGATTTTCCTCTGCCCGGTTTTGAAACATTATCAAAAGATATTGTATCTTTCACGGGAG GACTTCCATTGACTCTTAAGGTTATAGGGTCACTTCTTTTCTTAGAAAAAAAAGAGTTTTGGAAAGATAAATTGGAGCAATTACGACAAATGCCTGAAAA AGATGTTATGGATAGATTAATAATTAGTTATGCCGATCTAGACCATGAAGCACAACGGATATTTCTAGATATCGCATGCTTCTTCATTGGAGAGGATTAT AAAATTGCTTCTTACATGTGGAGAGATTGCAACTACCATCCTGTCATGAACGTCAATATTCTAGTTCAAAGATCTATGATCAAAATTGGAGATCGTAATG AGTTTCATATGCACAATCAACTTAGAGATATGGGCAGAGAAATTGTTCGTAGAGAAAATACGGAACATCCATGGATGAGAAGCAGAATCTGGTCGGGTGA GGAAGCTGTTGATCTCTTGTGTAACAACCAGGGAACAAAGCAAGTTAAAGCCATTAAAGTAAACTCGCCAAGTTCTGTTGTTTGGGAGCTTGGAAGTGAA AGCTTTACGAATTTGTCAGAGTTGGGATATTTCCACGCGATGGGCAGGGAGATGGTAGTAGACTTCAACCATCTCGTTCCAAACTTGAGATGGCTCGAGT TGGAAGCCAGCCGGATTAACAACTTCAATATGAAAAAACTAGTAATATTCGCTGTCCGAGGATTAGAACATGATTCCGGAATTAAGGATGCAATCAAGTT GAAAGTTCTAAATCTTCACGGGTGTTCCGAGCTGAGTAAACTTCCGGAATTTCCAGAATCAGGGAGCGTAGAGATGTTACACATTGATCATTTCGAAAAC AGACAGGAAAATCTGGAAATTGGGAAACTGCACAACCTAAAATGTCTGAAATTGCAGCACTGTAAACTTGGAAAGATCCAAGGGGGGACCATTGGCATGA TGGAGAGCCTTAAGGAGCTCCATGTCTCTATTGACTTCGAATGCGATTTTAATAGTTTCAGACGTGTGATTGCAGACATTGGGGAACTTACATCTCTTGA AATATTGAATGTTAACAGTCCTCATCTGGTAGATGTTTTAAAAGGCATTAAGCTACCAAAGAGTTTGAAGTTTCTACATACGGCATCCGGTTTCGATAAT CTCGAAGAGCTATTGGATTTGGAGGAGCTGGATGTTAATGGAACTCGGATGAGCCTCGTGATCCCGCACACTATTATGCGGGACAAGTTGAAATCAATGA GGCTTCACTCCATGAAGGGGATTTGTATGGCTGAAGGTGATGGCAACACCATGCTACTACCATCATCTCTAACTCGGCTACATATCCGGTGTCTAAAATC GGAGCAGTTCCCAAATCTGACTGATCTTGGGAACTTGACTGAATTAGTACTATGGGATTGTCCTAATCTGAAAGAGATACAGGGTCTTGAAGGGTTGAAA TCATTGCAGCTCCTCGTGATAGTTGAAGCTGGGAAATTAAATCGTATTGACGGCCTTGGAGATCTCATGTCTTCTACCGAATGCAGATTGAAAGAGTTGC AAATTATTGATTGCCCCCTTCTTTCTACATTACTAACAGACGAACAAAGAGAGAATGATTCATTGCAAATCGAATCTTTACTTGCATTGCGGATCAGGGG AGGGCGAGATCTGGATGGTTTACTACAGATTGATGGATTGGGAGAGTTGAAGTTGTTGAGATCGATAGAAGTGCAGATATGCTTTTCACTCAAAAGATTT CCTGTTGCTGAGGATCTACCCTACTACTACGGTATGAGTAGTATAAAGCTGGACTTTAGAGGATGCACTAACTTTGCTAACGTGAACTCGGATCTCGCTC CCCTCGTCGATTTGGATATGCATAACATTACCATCCACTGGCCAGATGAACCCTTGGAGTGGTGGATGAACCCATGA
AA sequence Show only first row Show all	>Lus10007828 pacid=23143574 polypeptide=Lus10007828 locus=Lus10007828.g ID=Lus10007828.BGIv1.0 annot-version=v1.0 MFRISDRRDSATDLYCVCCVGGGVMNYLTGIATVAAIMVFYKLFLERKGRSGEESVNDVSQQSNSTAARSSLHVSGGSDFFPTGEYDVVLSFADQDLRRN RFIEILYHSLTQMKIRTFIADNELLNGEEMWPDLFQALSRSTIYIPVISQSHAQSKFCLTELAEIVKHRRREKSPIILPIFYQVDPRDVSHQTGPFGNSF EQLKRTNVDAETIQSWRAALFKVGNLKGWHISTEKREVDVAESVTREIWSLLESDNLVGIDNQVEQIEHMLDLDSGGVNIVGIHGMGGVGKTTLAKAVYD KIFFRFDRYGILEDIRDTQKQKDVVEVSEANRLIQERVTQFKILVFLDDVDEEFHFDEVLGKQNFFASGSRFIITSRNMKVLMRLIESRSKLYEVQGMNP SQSLQLFCKYAFKKDFPLPGFETLSKDIVSFTGGLPLTLKVIGSLLFLEKKEFWKDKLEQLRQMPEKDVMDRLIISYADLDHEAQRIFLDIACFFIGEDY KIASYMWRDCNYHPVMNVNILVQRSMIKIGDRNEFHMHNQLRDMGREIVRRENTEHPWMRSRIWSGEEAVDLLCNNQGTKQVKAIKVNSPSSVVWELGSE SFTNLSELGYFHAMGREMVVDFNHLVPNLRWLELEASRINNFNMKKLVIFAVRGLEHDSGIKDAIKLKVLNLHGCSELSKLPEFPESGSVEMLHIDHFEN RQENLEIGKLHNLKCLKLQHCKLGKIQGGTIGMMESLKELHVSIDFECDFNSFRRVIADIGELTSLEILNVNSPHLVDVLKGIKLPKSLKFLHTASGFDN LEELLDLEELDVNGTRMSLVIPHTIMRDKLKSMRLHSMKGICMAEGDGNTMLLPSSLTRLHIRCLKSEQFPNLTDLGNLTELVLWDCPNLKEIQGLEGLK SLQLLVIVEAGKLNRIDGLGDLMSSTECRLKELQIIDCPLLSTLLTDEQRENDSLQIESLLALRIRGGRDLDGLLQIDGLGELKLLRSIEVQICFSLKRF PVAEDLPYYYGMSSIKLDFRGCTNFANVNSDLAPLVDLDMHNITIHWPDEPLEWWMNP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10007828 [exp]	0	1
AT4G27740			Yippee family putative zinc-bi...		Lus10023244 [exp]	5.5	0.9184
AT5G36930			Disease resistance protein (TI...		Lus10007825 [exp]	7.6	0.9373
AT1G27180			disease resistance protein (TI...		Lus10029628 [exp]	8.8	0.9110
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10029269 [exp]	10.7	0.9302
AT4G27290			S-locus lectin protein kinase ...		Lus10038554 [exp]	11.0	0.9049
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10007318 [exp]	11.4	0.9269
AT1G11340			S-locus lectin protein kinase ...		Lus10013244 [exp]	13.2	0.9199
AT5G27730			Protein of unknown function (D...		Lus10020653 [exp]	13.6	0.8788
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Lus10033718 [exp]	19.8	0.9055
AT5G41470			Nuclear transport factor 2 (NT...		Lus10024664 [exp]	21.4	0.8884

Compare expression of checked genes

Lus10007828 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.