Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 290 / 2e-81 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 266 / 5e-73 transmembrane receptors;ATP binding (.1.2) AT1G27180 266 / 8e-73 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G17680 265 / 1e-72 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G41750 243 / 5e-66 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G11250 241 / 4e-65 Disease resistance protein (TIR-NBS-LRR class) (.1) AT5G18360 233 / 2e-63 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G63880 231 / 3e-62 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT2G16870 231 / 5e-62 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G58120 229 / 1e-61 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007823 [exp] 1615 / 0 AT1G27170 322 / 3e-92 transmembrane receptors;ATP binding (.1.2) Lus10004747 [exp] 1214 / 0 AT5G36930 342 / 3e-99 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10012311 [exp] 1179 / 0 AT5G36930 354 / 6e-103 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007821 [exp] 1176 / 0 AT5G36930 339 / 4e-98 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007831 [exp] 1090 / 0 AT1G27180 332 / 7e-96 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10033953 [exp] 1076 / 0 AT5G36930 347 / 2e-102 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10040576 [exp] 1060 / 0 AT1G27180 355 / 3e-103 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10007825 [exp] 1057 / 0 AT5G36930 318 / 2e-89 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10000423 [exp] 1009 / 0 AT1G27180 338 / 5e-95 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T002200 [exp] 372 / 7e-112 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002400 [exp] 363 / 1e-108 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T005501 [exp] 366 / 3e-108 AT5G36930 612 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 363 / 3e-107 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 363 / 4e-107 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G017082 [exp] 360 / 1e-106 AT5G36930 638 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G052000 [exp] 360 / 1e-105 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T011750 [exp] 358 / 2e-105 AT5G36930 551 / 2e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002066 [exp] 357 / 4e-105 AT5G36930 631 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.007G143300 [exp] 358 / 3e-104 AT5G36930 519 / 2e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10007829 pacid=23143554 polypeptide=Lus10007829 locus=Lus10007829.g ID=Lus10007829.BGIv1.0 annot-version=v1.0 ATGGAACCTTCTCAACAACAGTCGTATTCGATAACATCTACGGAGCCACTTCCGATCGGGGAGTATGAGGTGTTTCTGAACTTCAGAGGACCCGATACGC GTCATTACATTACTGATATCCTCTATCGCTTCCTCGCTCGCTCCAAAATCCGCACGTTCAGAGACGAGGAAGAACTTCGTAAGGGAGAAGAAATATGGCC CAACCTCGTCAAAGCCATCCACCAGTCGCAGATTTCTATTCCTGTCTTCTCTCGCCGTTATTGTGAGAGCAAGTATTGCCTTAAGGAACTAGTTGAGCTG AACGAGCACCGGAAGCGAGAGAAAGGTCACATCATGCTTCCGATTTTCTACCTGGTGGACCCCGGAGATGTACGCCATCAGACCGGGGATGATTATCAGA AGGCATTTGATGAGCATAAGAGAAACAACATCGATGAGAAGGAATTGCAAAGTTGGAGAGTGGCCTTGAAGGAGATTGGAACGCTGAAAGGATGGCACAT CACGAGTACAGCAGAGGAGGCAGCTGTAGCAGATATTGTTTCTGGGGCTGCATGGTCACATTTAATAAAAAATAACTACGCATTAGAGACTGATAAGTTA GTGGGAATCGATGAGCAAGTAAACCGAGTTGTAGATCGGCTGAATCTAGGATCTCAAGGTGTTGATGTAGTTGGCCTCCACGGCATTGGTGGTATTGGCA AGACCACTATTGCCACCGCGGTCTATAACAAAATTTCGTTAAGCTTTGATCGCTATAGTTTTGTTGAGAATATACGCGAAGCGCAACAACAAAAGGATGG TGTTCTCCTTGTACAAAAGAAGTTTATCTCTGATATCTTAGGAAAGGACTCAGTTCGTTTGGTTGTTGGAGTCAAGGACGCAAAGAAGATTATAAGAGAT CGAGTTTCCCAGTTTAAAATTCTTGTGGTTCTTGATGATGTAGATGAAAAGTTCAACTTTGAGGAAGTTTTAGGAGAGTCTGAAAAATTTCTTTCTGGAA CCCGATTCATTGTCACATCTAGAGACACAAAAGTTTTGTTGAGGATCAACAAAACTAAGGAAAAGTTGCATGAAGTTCAAGGGTTGGATGCTAGTAGCTC GCTCCAATTATTCTGCAAACATGCATTTAAAAAGGATTCTCCTCCGTCGGGTTTCGAGAATTTATCTGAAAAGATAATATCAACAACAGAAAGACTTCCA TTGACACTTAAGATTATAGGGTCACGTCTCTACCTAGAAGAAAAGGATGTTTGGGAAGAAAAATTGAAGCAGTTAGAGACACAACCAGAAAAAGGTGTGA TGGATAGATTAATAATTAGCTACGATGATATAGAATATGAAGCCCAACAAATATTCTTAGATATAGCTTGTTTCCACATTGGAAAAAATAAAGAAATTGC TTCTTACATGTGGAGCGACTGCAAATTTTATCCGGCCAGCAACATAAATGTTCTAGTTCAAAGGTCAATGCTCAAAATTGGGGATCGTAAGGAGTTTCAG ATGCATGATCAACTTAGAGATATGGGTAGAGAAATTATCCGTCGAAAAAACATCGAACAACCATGGATGAGAAGCAGGATATGGTCGGGCGAGGAAGCTA TCGAGCTACTAGTTAAGAACAAGTGTAAGAATCAAGTTAAAGGCATTAGAGTGAACTCGGGAAGTGATGATGTTACAGAGCTTGATAGTGCATGTTTTAC AGAGTTGGCAGAGTTGAGATATTTGGATGCAGGGGAAACAAGGTTGAACGGAGATTTTAGTAATCTTCTTCCAAGTTTAAAATGGATGCAACTACAGAAT CATACTCGAAGTTTAGCATATCGTATGCCAAACTTCAATATGAAAAAGGTCATCATATTTGATGCTAATGTCGAAGGATTGGGAGATGACTGCATCCAGA CCAAGGAGGCAAAAAAGTTAAAAGTTTTACACCTTCCCCGTTGTGGCAATATGAGTAAACTTCCGGAATTTCCGGAATCGGGAAGCTTGGAGGTGTTACG CATCGATCATTTCAAGAACAAAGAGGAGGATATGAATATTGAGAAACTGCGGAACATAAAAGTACTCAAGTTAGTTTCTTGCGAGCTACGAAAGATCAAA GGTGGCACCATAGGGATGATGAAGGAGCTTCGGGAGCTGAATCTCCACGACATCAATTGCAATTTCGATAGTTTCAGAGGCGTGATTGCCGATATCGGGG AGCTGTTATCTCTCAAAATCTTGAATGTCAAAAGTCATTATCTCATGGATGTTTTGGAAGGGGTTAAGCTACCTAAAAGCTTGAAATATCTGATCACTCA ATCTGGTTTTGCTAATATCGCCGAGCTGATGGAGTTGGAGGAAATCATTATCATCGGAAGCAGTATGAAGACGACTGAGCTTGCGATCCCTCCGGCCTTG GACAGTAGTAGAGGGGACGAAAGTACCATTATCCCGTGGATTAATTCGTCCAAGTTGAAAGTCATGAGGCTTTATTCCATGAAGAGGATAATTATGGTGG AAAGTAAGAGCACCATGCTACCATCATCTCTTACCAAGCTGCAAATATGGAATCTAGATTCGGAGCAGCTTCCGAATTTGAAGAATCTGAGGAACCTCAC TGAATTGGAAATCAAGGACTGCCCCAATCTTCAAGAGATTCACGGCCTTGGAGGGACGAAATCATTGCAGATTCTCCGAATATACAATGCCGGAAAATTA ACATGTATCGACGGCCTTGGAAATCTTATGTCTTCTTCCAGCTGTAGGTTGACAAATTTGGAGATACATAAATGCCCGCTTCTTCGTGCGGTACTAACAT TCGGAAAACAAGATGTTGACGACGACAATGTTGCTGCTGCAGATGCTAATGGTGGTGGAAAGGAAACCGATTTAGTACGAATCGAGTCTTTACAAAATAT CGAAATCCATGGATGCCAATCCCTGGATGGTAGATCGATACCCAGACTGTCCAAGTATCCCAAGATTAAGGTGTTGAGAATGGAGGAAATTCATTTGAAC ATCAACTTCAAGGCAGCCAGCCAACAATACCAGCTGCTGGAAGGGCTTGAGAATCTCGAAGAGTTGGTTTCGCTAACGGTACATCATTTACCGAAAGTAC AGAGACTGCCTTCGCTGTCTAAGCTGAGCAAGTTGAGCTACTTGAGCTTGCGAGACCTTCCGAGTCTGCGAGAGATTGCAGGACTTGGAGAGTTGAAAAT GTTAAAGCAGCTAAAGGTGAGTAGATGCCTTTCGCTGGAAAGATTGTCCGTCACAGATCTTCCCTTGTCGACTATGTATCGTATCGAGTTGGACTTGAGA GGATGCGCAAACTTGATCGACGTCGACTCTGATCTTTCCCCCCTCACTGCCAGGACGAGAGAAGGCGATCTCAGAAAACTTGAAGTGATCATCCGTAGGC CGAATGAACCCGAGGAGGAGATCGAGACCAACTTGCTCTCCTGGCCACAACGTTTCTTGTGGAGCCACTAG
AA sequence Show only first row Show all	>Lus10007829 pacid=23143554 polypeptide=Lus10007829 locus=Lus10007829.g ID=Lus10007829.BGIv1.0 annot-version=v1.0 MEPSQQQSYSITSTEPLPIGEYEVFLNFRGPDTRHYITDILYRFLARSKIRTFRDEEELRKGEEIWPNLVKAIHQSQISIPVFSRRYCESKYCLKELVEL NEHRKREKGHIMLPIFYLVDPGDVRHQTGDDYQKAFDEHKRNNIDEKELQSWRVALKEIGTLKGWHITSTAEEAAVADIVSGAAWSHLIKNNYALETDKL VGIDEQVNRVVDRLNLGSQGVDVVGLHGIGGIGKTTIATAVYNKISLSFDRYSFVENIREAQQQKDGVLLVQKKFISDILGKDSVRLVVGVKDAKKIIRD RVSQFKILVVLDDVDEKFNFEEVLGESEKFLSGTRFIVTSRDTKVLLRINKTKEKLHEVQGLDASSSLQLFCKHAFKKDSPPSGFENLSEKIISTTERLP LTLKIIGSRLYLEEKDVWEEKLKQLETQPEKGVMDRLIISYDDIEYEAQQIFLDIACFHIGKNKEIASYMWSDCKFYPASNINVLVQRSMLKIGDRKEFQ MHDQLRDMGREIIRRKNIEQPWMRSRIWSGEEAIELLVKNKCKNQVKGIRVNSGSDDVTELDSACFTELAELRYLDAGETRLNGDFSNLLPSLKWMQLQN HTRSLAYRMPNFNMKKVIIFDANVEGLGDDCIQTKEAKKLKVLHLPRCGNMSKLPEFPESGSLEVLRIDHFKNKEEDMNIEKLRNIKVLKLVSCELRKIK GGTIGMMKELRELNLHDINCNFDSFRGVIADIGELLSLKILNVKSHYLMDVLEGVKLPKSLKYLITQSGFANIAELMELEEIIIIGSSMKTTELAIPPAL DSSRGDESTIIPWINSSKLKVMRLYSMKRIIMVESKSTMLPSSLTKLQIWNLDSEQLPNLKNLRNLTELEIKDCPNLQEIHGLGGTKSLQILRIYNAGKL TCIDGLGNLMSSSSCRLTNLEIHKCPLLRAVLTFGKQDVDDDNVAAADANGGGKETDLVRIESLQNIEIHGCQSLDGRSIPRLSKYPKIKVLRMEEIHLN INFKAASQQYQLLEGLENLEELVSLTVHHLPKVQRLPSLSKLSKLSYLSLRDLPSLREIAGLGELKMLKQLKVSRCLSLERLSVTDLPLSTMYRIELDLR GCANLIDVDSDLSPLTARTREGDLRKLEVIIRRPNEPEEEIETNLLSWPQRFLWSH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10007829 [exp]	0	1
AT2G43140	bHLH	bHLH129	basic helix-loop-helix (bHLH) ...		Lus10026733 [exp]	3.0	0.8690
AT2G04845			Acyl-CoA N-acyltransferases (N...		Lus10012349 [exp]	19.4	0.8219
AT1G75510			Transcription initiation facto...		Lus10010631 [exp]	22.2	0.8684
AT3G10572		APEM9	ABERRANT PEROXISOME MORPHOLOGY...		Lus10040572 [exp]	23.2	0.8607
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10016494 [exp]	25.2	0.8648
AT4G39910		ATUBP3	ubiquitin-specific protease 3 ...		Lus10014333 [exp]	32.4	0.8627
AT4G30360		ATCNGC17	cyclic nucleotide-gated channe...		Lus10019983 [exp]	35.3	0.8655
AT4G31150			endonuclease V family protein ...		Lus10000685 [exp]	50.1	0.8415
AT5G52210		ATGB1, ATARLB1	GTP-binding protein 1 (.1.2)		Lus10027446 [exp]	52.8	0.8614
AT1G14130			2-oxoglutarate (2OG) and Fe(II...		Lus10031054 [exp]	53.0	0.8387

Compare expression of checked genes

Lus10007829 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.