Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 115 / 2e-26 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 108 / 3e-24 transmembrane receptors;ATP binding (.1.2) AT1G27180 91 / 2e-18 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G22690 82 / 9e-16 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT2G16870 82 / 9e-16 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G11250 81 / 2e-15 Disease resistance protein (TIR-NBS-LRR class) (.1) AT5G17680 81 / 2e-15 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G41540 77 / 4e-14 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT3G25510 76 / 9e-14 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G12010 74 / 2e-13 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007821 [exp] 706 / 0 AT5G36930 339 / 4e-98 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007825 [exp] 698 / 0 AT5G36930 318 / 2e-89 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007828 [exp] 462 / 4e-150 AT5G36930 319 / 7e-92 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10000423 [exp] 458 / 8e-145 AT1G27180 338 / 5e-95 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10007823 [exp] 424 / 7e-135 AT1G27170 322 / 3e-92 transmembrane receptors;ATP binding (.1.2) Lus10007829 [exp] 421 / 1e-133 AT5G36930 330 / 2e-94 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007822 [exp] 402 / 2e-129 AT4G11170 86 / 7e-17 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10007831 [exp] 391 / 1e-122 AT1G27180 332 / 7e-96 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10004747 [exp] 382 / 4e-119 AT5G36930 342 / 3e-99 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G004599 [exp] 122 / 2e-28 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.015G043501 [exp] 120 / 2e-28 AT1G27170 534 / 5e-176 transmembrane receptors;ATP binding (.1.2) Potri.012G053200 [exp] 118 / 2e-27 AT1G27170 1187 / 0.0 transmembrane receptors;ATP binding (.1.2) Potri.T002200 [exp] 117 / 5e-27 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.002G056100 [exp] 115 / 2e-26 AT5G36930 591 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002066 [exp] 115 / 3e-26 AT5G36930 631 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G018396 [exp] 113 / 3e-26 AT5G36930 374 / 5e-118 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.005G206400 [exp] 114 / 4e-26 AT5G36930 587 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001600 [exp] 114 / 5e-26 AT5G36930 721 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.001G066500 [exp] 114 / 5e-26 AT5G36930 462 / 2e-146 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10007830 pacid=23143559 polypeptide=Lus10007830 locus=Lus10007830.g ID=Lus10007830.BGIv1.0 annot-version=v1.0 ATGGATCACGGTCGCTCGCTGAAGTTATTTTACAAGCATGCCTTCAAAAATGATTTTCCTGACCCGGGTTTTGAGGCATTATCCGAAGATATCGTATCCA CCACAGGAGGACTTCCATCGACACTTGAGGCTACAGGGTCGCTTCTTTACCTAGAAGAAAAGGATGTTTGGGAAGACAAATTGAAGCAGTTACGAGGAAC TTCAACGATGAACATCGATTGGTTAATGATTAGTTATGAGAAACTAACATCCGAAGAGCAACAAATATTTCTAGATATTGCTTGTTTCTATATTGGAACT GATAAAAAAATTGCTTCTTACATGTGGAGTGACTGCAACTTTCAACCTGACCGTAGCATTTTTGTTTTGGCTCGGAGGTCTATGGTCAAAATTGGGACTT GCAATGAGTTTCAGATGAACAATGAACATAGAGATATGGGTAAAGATATAGTTCGTAGAGAAAATATAGAACACTCATGGATGAGAAGCAGAATCTGGTC GAATGAGGAAGCTGCTGATCTCTTGCTTAACAACCAGGAGGCAAGCAAGCTGAAAGTTCTTAATCTTTTCTGGTGTTTTGAGCTGAGAAGACTTCCGAAC TTTCCAGAATCGGGGAGCCTAGAGATATTACATATTGACAATTTCAAGAACAGAGAGGAAACTCTGGAAATTGAAAAACTGCAGAACCTAAAAGAACTGA AATTGCAGCATTGTAAACTTGGAAAGATCGAAGGAGGCACCATTGGCATGATGAAGGGGCTTCGGGAGCTCGATGTCTCCATCAACTTCGAATGCGATTT TGATAGTTTTAGACGTTTGATTGCCGACATTGCGGAGCTGTCGACTCTTCAAATATTAAATGTTAACAATCCACATTTGGTGGATGTTTTAGAAGGGATT AAGCTACCGGAGAGTTTGAAGTTTCTACATACTGCATCTGGTTTCGATAATCTTGAGGAGCTATTGGATTTGGAGGAACTCGATGTTAATGGAACTCGGA TGAGACTTGTGATCCCGCACACTATTATGCAGGACAAGTTGAAATCAATGAGGCTTTACTCCATGGAGGGGATTTTTATGGCTGAAAGTGATGGCAGTAC CATGCTACTTCCATCATCTCTAACTAAGCTACATATCCGGTGTCTAAAATCGGAGCAGTTCCCGAACCTGACCGATCTCGGGAACTTGACTGAATTAGTA CTCTGGGATTGTCCTAATCTGGAAGATATACATGGTCTTGGAGGGTTGAAATCATTGCAGCTCCTCGTGATTGTTGCAGCGGGGAAATTAACTCGTATCA ACGGCCTTGGAGATCTCATGTCTTCTACCAAATGCAGGTTGAAAGAGTTGCTGATCACTGATTGCCCTCTTCTTCCTACATTACTAACACACGAACAAAG AGAGAACGATTCAGCGCGAATCGAATCTTTACTCACATTGCGGATCAAGGGAGGCCGATTTCTGGATGGCAAATCGATACCAAAACTGTCCAAGTTTCCA AGGCTTAAGGAGTTGGAAATCGGTGAAATCAGTTTGAACATTAACAGTGAAGAATCAGCTAGCAAGCAGAATCAGCTATTGGAAGGGCTCGAGAATCTGG AAGAGTTGGTTCAACTGAAGGTGCACCATTTGCCGAAAGTACAGAGACTGCCTTCACTGTCCAGGCTAAGGAAGTTGGAGAACTTAGCATTGGAAGACCT TCCGGGCTTGCGACATATCGATGGACTGGGAGAGTTGAAGTCGTTGAGATCGATAGAAGTGCAGAGATGCTTTTCGCTCGAAAGATTTCCTGTCGCGCTG GATCTACCCTACTACGGTGGTATGAGTCGTATAACGCTGGACTTGAGAGGATGCACAAACTTCACTAACCTTAACTCGGATCTCGCTCCCCTCACCAATC TTGATTTGCTTAACGTCACTATCAACTGGCCATATGATCCCTTGGAGTGGTGGATGGCCCCATGA
AA sequence Show only first row Show all	>Lus10007830 pacid=23143559 polypeptide=Lus10007830 locus=Lus10007830.g ID=Lus10007830.BGIv1.0 annot-version=v1.0 MDHGRSLKLFYKHAFKNDFPDPGFEALSEDIVSTTGGLPSTLEATGSLLYLEEKDVWEDKLKQLRGTSTMNIDWLMISYEKLTSEEQQIFLDIACFYIGT DKKIASYMWSDCNFQPDRSIFVLARRSMVKIGTCNEFQMNNEHRDMGKDIVRRENIEHSWMRSRIWSNEEAADLLLNNQEASKLKVLNLFWCFELRRLPN FPESGSLEILHIDNFKNREETLEIEKLQNLKELKLQHCKLGKIEGGTIGMMKGLRELDVSINFECDFDSFRRLIADIAELSTLQILNVNNPHLVDVLEGI KLPESLKFLHTASGFDNLEELLDLEELDVNGTRMRLVIPHTIMQDKLKSMRLYSMEGIFMAESDGSTMLLPSSLTKLHIRCLKSEQFPNLTDLGNLTELV LWDCPNLEDIHGLGGLKSLQLLVIVAAGKLTRINGLGDLMSSTKCRLKELLITDCPLLPTLLTHEQRENDSARIESLLTLRIKGGRFLDGKSIPKLSKFP RLKELEIGEISLNINSEESASKQNQLLEGLENLEELVQLKVHHLPKVQRLPSLSRLRKLENLALEDLPGLRHIDGLGELKSLRSIEVQRCFSLERFPVAL DLPYYGGMSRITLDLRGCTNFTNLNSDLAPLTNLDLLNVTINWPYDPLEWWMAP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10007830 [exp]	0	1
AT1G71400		AtRLP12	receptor like protein 12 (.1)		Lus10009330 [exp]	4.0	0.6690
AT3G43660			Vacuolar iron transporter (VIT...		Lus10029776 [exp]	7.3	0.6687
AT4G35160			O-methyltransferase family pro...		Lus10018526 [exp]	7.5	0.6570
AT4G34770			SAUR-like auxin-responsive pro...		Lus10016914 [exp]	7.9	0.5712
					Lus10006287 [exp]	16.7	0.6564
AT5G63920		TOP3A, AtTOP3al...	topoisomerase 3alpha (.1)		Lus10006779 [exp]	16.9	0.6361
AT4G02160			unknown protein		Lus10010018 [exp]	17.3	0.6465
AT1G44100		AAP5	amino acid permease 5 (.1)		Lus10008844 [exp]	17.9	0.6091
AT2G40220	AP2_ERF	ATABI4, GIN6, S...	SUCROSE UNCOUPLED 6, SUGAR-INS...		Lus10009834 [exp]	19.1	0.6485
AT4G22410			Ubiquitin C-terminal hydrolase...		Lus10035548 [exp]	22.0	0.6038

Compare expression of checked genes

Lus10007830 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.