Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 152 / 2e-38 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G41750 141 / 7e-35 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G17680 139 / 3e-34 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G46260 134 / 2e-32 disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46450 132 / 5e-32 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46270 130 / 2e-31 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G72890 125 / 5e-31 Disease resistance protein (TIR-NBS class) (.1), Disease resistance protein (TIR-NBS class) (.2) AT1G72920 122 / 7e-31 Toll-Interleukin-Resistance (TIR) domain family protein (.1) AT5G51630 127 / 2e-30 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT1G72940 121 / 8e-30 Toll-Interleukin-Resistance (TIR) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007812 [exp] 722 / 0 AT5G36930 359 / 4e-106 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007810 [exp] 474 / 3e-155 AT5G36930 242 / 1e-65 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10000331 [exp] 410 / 7e-131 AT5G36930 217 / 1e-57 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007811 [exp] 408 / 1e-128 AT5G36930 376 / 1e-110 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007809 [exp] 376 / 3e-119 AT5G36930 239 / 5e-65 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007790 [exp] 373 / 6e-116 AT5G36930 343 / 4e-99 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007808 [exp] 366 / 5e-113 AT5G36930 418 / 1e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10004726 [exp] 355 / 2e-111 AT5G36930 167 / 5e-42 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10002247 [exp] 354 / 5e-111 AT5G36930 363 / 1e-108 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G004599 [exp] 181 / 6e-48 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002428 [exp] 171 / 3e-46 AT5G36930 387 / 2e-122 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G019710 [exp] 169 / 1e-45 AT5G36930 445 / 2e-144 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.007G143100 [exp] 162 / 3e-45 AT5G36930 234 / 1e-69 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002568 [exp] 167 / 5e-45 AT5G36930 439 / 2e-142 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002200 [exp] 168 / 6e-44 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G017082 [exp] 168 / 1e-43 AT5G36930 638 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G046000 [exp] 164 / 4e-43 AT5G36930 496 / 1e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G052000 [exp] 166 / 5e-43 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 166 / 6e-43 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10007836 pacid=23143577 polypeptide=Lus10007836 locus=Lus10007836.g ID=Lus10007836.BGIv1.0 annot-version=v1.0 ATGATTTACATAATAATAATTGGGATAGTTCTTGGGATTATACTTGTTTACAACTACTTTTTTGGGGGAAGAAGGGGAGCATATGGGGACTCCAATGATA GTACTTCTCAACAATCAACTTCGTCTACCATATCTTCCTCTGTTCCTGCCTCTGGAGATTCTGATTCCGTGCCCCTTCCAACGGGGGACTACGAGGTGTT TTTGAGTTTTAGAGGTCCAGATACGCGTTATTATGTCACTGACATTCTCTATCGCTTCCTCCTTAACTTGAAGATCCGCACGTTCAGAGATGATGATGAA CTGCGTAAGGGAGAAGGGATCGGGACAAACCTTTTTCGAGCCATCAGTCAGTCGAAAATCCACGTCCCGATATTGTCCCAGGGTTACGCTCATAGTAAAT GGTGTCTCAACGAGCTTGTTGAGATAATCAAGCAACGTAAGCAGGGTAAAGGGCATATCATACTTCCAATTTTCTATCTGATGGATCCTCGAGATGTACG CCATCAAACCGGGCCATACCAAAGTGCATTCAAACAACATAAAAGGAATAAAGTTGATGAAAACATCATACAGAGTTGGAAAGATGCTTTGAACGAGGTC GGAACTTTGAAAGGATGGCACCTCCAAAACAAGGAAGAAAACATTAAAGTCTTGAGTACTATAAACGAAAGTGGATGCGTCTTGTATGAAGTCGGAGCAA TGAGTCATCAACATTCGTTGCAGCTCTTATGCAGGCATGCGTTCCATATGGACTCTCCTCCCTCGGATTATGAAACTGTAGCGAACAAAATTGTGTTGAC TACAGGAGGACTTCCATTAACACTGAAGGTTTTGGGGTCGCTTCTGCATAGAGAAGATATAGATTTTTGGGAAGAGAAGTTGTTACAGTTGCAGGGAACG GTCGAGGTTCAAGTCATGGAAAGGTTGAAGATAAGTTACGATGCGCTTCCGTACCAGGCACAACAAATATTTTTGGACGTTGCGTGTTTCTTCATCGGGA AAAGCATAGACATGTCTTCTTACCTGTGGAACGATTGCAAACTTTATCCCGTCACTAATATTAAGATTCTAGTTCAAAGATCAATGATCAAAGTGGGAGA CGACTACCAGTTTCAAATGCATGACCAGCTTAGAGATATGGGTAGAGAAATTGTACGTCAGGAAGATATAAACCGTCCGTGGATGAGGAGTAGAATATGG GCCGCAGAAGAAGCCATCGACACATTGTCCAACAAGAAGGGATCAGATAAAGTTAAAGCAATAAGAGTGGGCACTTCATCCTCAGCCTCCATTCCCGTGG AAGAACTCAGAAGTGAATATTTCTCGAATTTGCCAGAATTAAAATATTTGGATGTTGGATCGTCAACGCTTACAGGAGACTTCAACAATCTTCTCCCAAA CATGAGGTGGCTTCGACTGAATCAACAAGCAAATATACAGGATCGCCCGTTCAAAAATTTCGATATGAAAAATGTAGTAATCCTCGATCTCGAGGATAAC TTCATGAACGACGATTGGGGAGGTTGGAGTCAAATCAAGACAGCAGGTAAGCTGAAATATATGGATCTTTCTGGTTGTTGGGATATGAAGACAATCCCTT ACTTGCCAAGGAGCCTAGAGATCTTCATACTTGGACACTTTTTCAATGATCAAGAGGTATTAAACATTGGTGAGTTACAAGAGCTAAAGTGGTTGCTTCT CAAGTGGTCTATCTTCGGGGAGATCAAGGGCACCATTGGAATGCTAAAGGATCTTCAATGGCTTGTACTCGTCGAGTTTAAGTGCGGTTGTTAG
AA sequence Show only first row Show all	>Lus10007836 pacid=23143577 polypeptide=Lus10007836 locus=Lus10007836.g ID=Lus10007836.BGIv1.0 annot-version=v1.0 MIYIIIIGIVLGIILVYNYFFGGRRGAYGDSNDSTSQQSTSSTISSSVPASGDSDSVPLPTGDYEVFLSFRGPDTRYYVTDILYRFLLNLKIRTFRDDDE LRKGEGIGTNLFRAISQSKIHVPILSQGYAHSKWCLNELVEIIKQRKQGKGHIILPIFYLMDPRDVRHQTGPYQSAFKQHKRNKVDENIIQSWKDALNEV GTLKGWHLQNKEENIKVLSTINESGCVLYEVGAMSHQHSLQLLCRHAFHMDSPPSDYETVANKIVLTTGGLPLTLKVLGSLLHREDIDFWEEKLLQLQGT VEVQVMERLKISYDALPYQAQQIFLDVACFFIGKSIDMSSYLWNDCKLYPVTNIKILVQRSMIKVGDDYQFQMHDQLRDMGREIVRQEDINRPWMRSRIW AAEEAIDTLSNKKGSDKVKAIRVGTSSSASIPVEELRSEYFSNLPELKYLDVGSSTLTGDFNNLLPNMRWLRLNQQANIQDRPFKNFDMKNVVILDLEDN FMNDDWGGWSQIKTAGKLKYMDLSGCWDMKTIPYLPRSLEIFILGHFFNDQEVLNIGELQELKWLLLKWSIFGEIKGTIGMLKDLQWLVLVEFKCGC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10007836 [exp]	0	1
AT2G40090		ATATH9	ABC2 homolog 9 (.1)		Lus10028292 [exp]	1.7	0.8646
AT1G68930			pentatricopeptide (PPR) repeat...		Lus10030908 [exp]	3.2	0.8489
AT1G06510			unknown protein		Lus10001505 [exp]	3.2	0.8704
AT5G15270			RNA-binding KH domain-containi...		Lus10033557 [exp]	4.5	0.8776
AT4G39010		ATGH9B18	glycosyl hydrolase 9B18 (.1)		Lus10035475 [exp]	5.2	0.8319
AT5G11030		ALF4	aberrant lateral root formatio...		Lus10006197 [exp]	8.9	0.8345
AT2G47230		ATDUF6	DOMAIN OF UNKNOWN FUNCTION 724...		Lus10004508 [exp]	12.7	0.8380
AT2G42920			Pentatricopeptide repeat (PPR-...		Lus10007341 [exp]	16.1	0.8483
AT3G18290		BTS, EMB2454	embryo defective 2454, BRUTUS,...		Lus10034346 [exp]	16.4	0.8569
AT2G25930		PYK20, ELF3	EARLY FLOWERING 3, hydroxyprol...		Lus10007459 [exp]	16.6	0.7610

Compare expression of checked genes

Lus10007836 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.