Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51190 101 / 5e-26 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G07580 102 / 7e-26 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G47230 101 / 2e-25 AP2_ERF ATERF5, ATERF-5, ERF5 ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR- 5, ethylene responsive element binding factor 5 (.1) AT5G61600 98 / 2e-24 AP2_ERF ERF104 ethylene response factor 104 (.1) AT3G23230 92 / 2e-23 AP2_ERF ERF98 Integrase-type DNA-binding superfamily protein (.1) AT4G17490 93 / 2e-22 AP2_ERF ERF-6-6, ATERF6 ethylene responsive element binding factor 6 (.1) AT5G43410 86 / 3e-21 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G44840 86 / 6e-20 AP2_ERF ATERF13, EREBP ethylene-responsive element binding factor 13 (.1) AT4G17500 86 / 8e-20 AP2_ERF ATERF-1, AtERF1 ethylene responsive element binding factor 1 (.1) AT5G61590 84 / 2e-19 AP2_ERF Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004752 [exp] 285 / 8e-98 AT5G07580 122 / 4e-34 Integrase-type DNA-binding superfamily protein (.1) Lus10032498 [exp] 102 / 2e-26 AT5G07580 144 / 1e-42 Integrase-type DNA-binding superfamily protein (.1) Lus10042995 [exp] 99 / 4e-25 AT5G07580 129 / 1e-36 Integrase-type DNA-binding superfamily protein (.1) Lus10032499 [exp] 98 / 3e-24 AT5G51190 186 / 8e-59 Integrase-type DNA-binding superfamily protein (.1) Lus10042996 [exp] 97 / 6e-24 AT5G51190 189 / 6e-60 Integrase-type DNA-binding superfamily protein (.1) Lus10011830 [exp] 94 / 7e-24 AT3G23230 134 / 4e-41 Integrase-type DNA-binding superfamily protein (.1) Lus10013959 [exp] 89 / 3e-22 AT3G23240 124 / 2e-36 ethylene response factor 1 (.1) Lus10016212 [exp] 91 / 5e-22 AT2G44840 146 / 1e-43 ethylene-responsive element binding factor 13 (.1) Lus10021873 [exp] 89 / 8e-22 AT3G23230 143 / 4e-44 Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G154200 [exp] 104 / 2e-26 AT4G17490 159 / 2e-46 ethylene responsive element binding factor 6 (.1) Potri.003G080600 [exp] 103 / 9e-26 AT4G17490 159 / 3e-46 ethylene responsive element binding factor 6 (.1) Potri.003G150800 [exp] 101 / 2e-25 AT5G51190 185 / 7e-58 Integrase-type DNA-binding superfamily protein (.1) Potri.010G072400 [exp] 97 / 5e-25 AT3G23230 85 / 1e-21 Integrase-type DNA-binding superfamily protein (.1) Potri.001G079800 [exp] 100 / 7e-25 AT5G51190 186 / 2e-58 Integrase-type DNA-binding superfamily protein (.1) Potri.001G079600 [exp] 99 / 8e-25 AT5G07580 145 / 1e-42 Integrase-type DNA-binding superfamily protein (.1) Potri.003G151000 [exp] 98 / 1e-24 AT5G07580 164 / 6e-50 Integrase-type DNA-binding superfamily protein (.1) Potri.004G051700 [exp] 94 / 2e-23 AT5G47220 111 / 1e-30 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1) Potri.008G166100 [exp] 92 / 3e-23 AT3G23230 82 / 2e-20 Integrase-type DNA-binding superfamily protein (.1) Potri.002G039200 [exp] 91 / 4e-23 AT3G23230 113 / 7e-33 Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10007841 pacid=23143599 polypeptide=Lus10007841 locus=Lus10007841.g ID=Lus10007841.BGIv1.0 annot-version=v1.0 ATGGCGGAAGCAATCGGAGCATATTCCGCTTTTGATCTCGTCGTCGACAACTATCAAATCTTTCTCGACGATTGCCTCTTTCCCGCTGGGGTTGAATCCT CCTCTTCTTCCGTCAGCTGTGATTCGGCCATTTCGGTTTCTGATTACTACTACTTGGACGACGATCAGGTCCACTTGAATCGAAACGAGCTCGATTTAGA GACGAATAATCGCCCCATAGTCGATCTGTCCGAAGAAAAACGTGGAATCGTCGGATTCAAGAGAGATTCTCTAGGTTTTTCTAAATCAGAGCAGAAATTC AAGACCGAATCGAGCAAAATGGAGCCGGAATTTGAGTTAATCGAACTTAAAACAACAGTTCCTGCTCCGAGCAGGGACTTTGTTTTCGAATTTGGATCTG AACCGAAGACCGATTCACGTCCCGAGACGGTTCGAACCGGAAGAGGCGATGGGGGGCGATACAGGGGAGTGAGGCAGAGGCCGTGGGGGAAGTATGCGGC GGAGATTCGGGATCCGAGCAGGAAAGGATCGAGGCTGTGGCTTGGGACGTTCGACACGTCGAAGGAAGCAGCGAGAGCTTACGATCGAGCTGCGTTCGAG CTTCGAGGCAGGAAGGCGATCCTTAACTTCCCGGCTGACGCCGGCAAGTACAAGACGGACGCGGGAAAGGATGAGGTGGAAGCCGCCTGGGAACGGAAGC GTCAAAGAGGAGGAGAAGGCGGGAAATGA
AA sequence Show only first row Show all	>Lus10007841 pacid=23143599 polypeptide=Lus10007841 locus=Lus10007841.g ID=Lus10007841.BGIv1.0 annot-version=v1.0 MAEAIGAYSAFDLVVDNYQIFLDDCLFPAGVESSSSSVSCDSAISVSDYYYLDDDQVHLNRNELDLETNNRPIVDLSEEKRGIVGFKRDSLGFSKSEQKF KTESSKMEPEFELIELKTTVPAPSRDFVFEFGSEPKTDSRPETVRTGRGDGGRYRGVRQRPWGKYAAEIRDPSRKGSRLWLGTFDTSKEAARAYDRAAFE LRGRKAILNFPADAGKYKTDAGKDEVEAAWERKRQRGGEGGK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47230	AP2_ERF	ATERF5, ATERF-5...	ETHYLENE RESPONSIVE ELEMENT BI...		Lus10007841 [exp]	0	1
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10002535 [exp]	2.8	0.8537
AT2G43000	NAC	ANAC042, JUB1, ...	NAC domain containing protein ...		Lus10038332 [exp]	5.7	0.8764
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10030927 [exp]	13.1	0.8846
AT1G66880			Protein kinase superfamily pro...		Lus10009150 [exp]	18.7	0.8267
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Lus10014086 [exp]	20.5	0.8750
AT1G66880			Protein kinase superfamily pro...		Lus10009149 [exp]	22.7	0.8102
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Lus10033429 [exp]	34.0	0.8542
AT4G35070			SBP (S-ribonuclease binding pr...		Lus10019790 [exp]	34.8	0.8649
AT3G11840		PUB24	plant U-box 24 (.1)		Lus10000800 [exp]	53.0	0.8209
AT2G40340	AP2_ERF	AtERF48, DREB2C	Integrase-type DNA-binding sup...		Lus10002855 [exp]	61.1	0.8166

Compare expression of checked genes

Lus10007841 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.