Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52660 261 / 2e-85 MYB Homeodomain-like superfamily protein (.1.2) AT4G01280 251 / 6e-82 MYB Homeodomain-like superfamily protein (.1.2) AT1G01520 246 / 4e-80 MYB ASG4 ALTERED SEED GERMINATION 4, Homeodomain-like superfamily protein (.1) AT3G09600 237 / 3e-76 MYB LCL5 (LHY-CCA1-LIKE5), REVEILLE 8 (RVE8) REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) AT5G02840 221 / 2e-70 MYB LCL1 LHY/CCA1-like 1 (.1.2.3) AT5G17300 103 / 1e-24 MYB RVE1 REVEILLE 1, Homeodomain-like superfamily protein (.1) AT2G46830 102 / 1e-23 MYB AtCCA1, CCA1 circadian clock associated 1 (.1.2) AT5G37260 98 / 3e-23 MYB RVE2, CIR1 REVEILLE 2, CIRCADIAN 1, Homeodomain-like superfamily protein (.1) AT1G01060 100 / 8e-23 MYB LHY, LHY1 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) AT1G18330 96 / 4e-22 MYB RVE7, EPR1 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036392 [exp] 559 / 0 AT5G52660 306 / 5e-103 Homeodomain-like superfamily protein (.1.2) Lus10027521 [exp] 251 / 6e-82 AT5G52660 353 / 1e-122 Homeodomain-like superfamily protein (.1.2) Lus10039284 [exp] 248 / 4e-79 AT5G52660 350 / 9e-120 Homeodomain-like superfamily protein (.1.2) Lus10038846 [exp] 227 / 7e-71 AT5G52660 292 / 2e-96 Homeodomain-like superfamily protein (.1.2) Lus10019902 [exp] 219 / 4e-68 AT3G09600 351 / 9e-121 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) Lus10014015 [exp] 211 / 1e-64 AT3G09600 317 / 3e-106 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) Lus10014966 [exp] 112 / 9e-29 AT4G25740 216 / 5e-71 RNA binding Plectin/S10 domain-containing protein (.1.2) Lus10030184 [exp] 101 / 1e-23 AT1G01060 247 / 2e-75 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) Lus10042292 [exp] 101 / 1e-23 AT1G18330 198 / 5e-60 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G089300 [exp] 380 / 9e-132 AT4G01280 293 / 2e-98 Homeodomain-like superfamily protein (.1.2) Potri.002G163100 [exp] 362 / 3e-124 AT4G01280 266 / 1e-87 Homeodomain-like superfamily protein (.1.2) Potri.017G146800 [exp] 290 / 5e-97 AT5G52660 303 / 3e-102 Homeodomain-like superfamily protein (.1.2) Potri.004G073300 [exp] 288 / 6e-96 AT5G52660 298 / 2e-100 Homeodomain-like superfamily protein (.1.2) Potri.006G133000 [exp] 234 / 6e-75 AT3G09600 379 / 1e-132 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) Potri.016G083900 [exp] 225 / 2e-71 AT3G09600 375 / 4e-131 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) Potri.012G038300 [exp] 104 / 2e-24 AT1G18330 158 / 5e-44 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Potri.015G030400 [exp] 103 / 3e-24 AT1G18330 170 / 1e-48 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Potri.004G074300 [exp] 103 / 3e-24 AT5G17300 218 / 5e-66 REVEILLE 1, Homeodomain-like superfamily protein (.1) Potri.014G106800 [exp] 102 / 1e-23 AT1G01060 378 / 3e-121 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10007914 pacid=23143194 polypeptide=Lus10007914 locus=Lus10007914.g ID=Lus10007914.BGIv1.0 annot-version=v1.0 ATGGTGTCCGTGAATCCCAACCCGGCTCCCGGCTTCTTCTTCTTCGATTCCTTGGAGAATCCTATCGACTCACCGATTCTTCCTTCCGGTGTCCGTTCGC TGCCTCCGTCCTCCTCCTCAGTTGCCGCGGCGGCGGCAGCGACTGACACGGCCAGTACGTCGGCGAACAACAACACCTTGTCCTTCGGCGAGGATCAGAG CAAGAAGATCCGGAAGCCGTACACGATTACCAAGTCCAGGGAGAGCTGGACGGAGCAGGAGCACGACAAGTTTCTAGAAGCTCTCCAGCTATTTGATCGT GATTGGAAGAAAATTGAAGCGTTTGTTGGTTCAAAGACTGTGATTCAGATACGTAGCCATGCCCAAAAGTACTTTCTCAAAGTTCAGAAGAGTGGAACAA GTGAGCACGTCCCTCCACCTCGACCGAAACGGAAAGCAGCTCATCCCTACCCGCAAAAGGCGCCTAAAACTGCAGCTCCTGTTGTACACCAAGTGACTGA GGTGTTTCCATCTCCATCTGCTTCAATGGAAAATGGATACGTTTACCAGCAGCCAGACTCATCTTCAGTTCTGGCAACTCCCATGTCTGCTGGAGGAGCT TTATCTTCCTGGAACTATTACCCTCTACCACAAGCCAGTTTGTCGCAAGTGATTCCAGATGAGACTGCCAATGTTGGAACAACAACTGCAAGTAACTGTT GCTACAGTAGTAGCAATGACAGTACACCAAAGACATGGCAGGGTCATCAAACCGTTCGGAGAGGAGATCAAAATGAAGCAGCACGAGTGATGCCAGACTT TGCTCAAGTATATAGCTTCATTGGCAGTGTTTTCGACCCTAATGCAAGTGGTCATGTTGAGAAACTGAAGCAGATGGATCCAATAAACCTGGAAACTGTG ATGCTGTTAATGAGAAACCTGTCCTTCAACTTAACGAGTCCCGAGTTTGAAGATCATCAGAGGAAAGTTCTTGCATCACACGATCCAGCTACGGAGAGAG CAACTGGTTATGGTAATATCAGGTCGGATGAAACAACTGGGAGCGCAATTCCTGCCGTTTGA
AA sequence Show only first row Show all	>Lus10007914 pacid=23143194 polypeptide=Lus10007914 locus=Lus10007914.g ID=Lus10007914.BGIv1.0 annot-version=v1.0 MVSVNPNPAPGFFFFDSLENPIDSPILPSGVRSLPPSSSSVAAAAAATDTASTSANNNTLSFGEDQSKKIRKPYTITKSRESWTEQEHDKFLEALQLFDR DWKKIEAFVGSKTVIQIRSHAQKYFLKVQKSGTSEHVPPPRPKRKAAHPYPQKAPKTAAPVVHQVTEVFPSPSASMENGYVYQQPDSSSVLATPMSAGGA LSSWNYYPLPQASLSQVIPDETANVGTTTASNCCYSSSNDSTPKTWQGHQTVRRGDQNEAARVMPDFAQVYSFIGSVFDPNASGHVEKLKQMDPINLETV MLLMRNLSFNLTSPEFEDHQRKVLASHDPATERATGYGNIRSDETTGSAIPAV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52660	MYB		Homeodomain-like superfamily p...		Lus10007914 [exp]	0	1
AT4G14410	bHLH	bHLH104	basic Helix-Loop-Helix 104, ba...		Lus10021876 [exp]	3.9	0.8410
AT1G04830			Ypt/Rab-GAP domain of gyp1p su...		Lus10037829 [exp]	9.7	0.8584
AT5G26990			Drought-responsive family prot...		Lus10015412 [exp]	13.2	0.8433
AT4G17570	GATA	GATA26	GATA transcription factor 26 (...		Lus10011008 [exp]	17.8	0.7726
AT3G19910			RING/U-box superfamily protein...		Lus10010182 [exp]	19.1	0.8395
AT5G05070			DHHC-type zinc finger family p...		Lus10035395 [exp]	22.1	0.8191
AT5G52200		AtI-2	inhibitor-2, phosphoprotein ph...		Lus10038872 [exp]	27.7	0.8430
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10020514 [exp]	29.9	0.8335
AT4G08180		ORP1C	OSBP(oxysterol binding protein...		Lus10025635 [exp]	41.1	0.7844
AT1G55170			unknown protein		Lus10037647 [exp]	45.2	0.7822

Compare expression of checked genes

Lus10007914 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.