Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01120 524 / 0 ORC4, ATORC4 origin recognition complex subunit 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013481 [exp] 352 / 3e-119 AT2G01120 296 / 8e-98 origin recognition complex subunit 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G126300 [exp] 622 / 0 AT2G01120 601 / 0.0 origin recognition complex subunit 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10007944 pacid=23162325 polypeptide=Lus10007944 locus=Lus10007944.g ID=Lus10007944.BGIv1.0 annot-version=v1.0 ATGACGAACCAGAAATACGCTCAGGAGGCTCAAATCCTCCTCAGGAGCAGGCTCTGTAACCCAAATTTCGTCTTCAAGGCGCTTTCCGACTCTCCGGATA GCAATTACAGCAAACTGAAGTTCATTGTATCAAGTTCGATCACAGAAGCATGCAACAACTCACTGCTACTTCTTGGGCCCCGTGGCTCCGGAAAGACTGC TGTGCTCGAGCTCGTGCTGAACGATTTATTGGAAGAATATCCTGATATGATATCTGTGATCAGATTGAATGGGCTGATACATAATGATGACAACTGCGCC TTCAAGGAAATTGCTAGGCAGCTGTGCATGGAGCATCAATTGTTATTCTCAAAGATGGCATCATTTGATGATAACTCCCAGTTCTTGATAGCCATGCTAA GGGAGTGTGGCTTAGCTCACAAAACAATTGTCTTTGTGCTTGAAGAGTTTGACCTATTCGCACAGGGAAAGCAACGGTTACTTTATAGCTTGTTGGACGC AATGCAGTCTATATCATCTCAAGCCGTCATCATCGGTGTCAGTTGTAAATTGGATGCTGATCAGCTTCTGGAAAAAAGAGTAAGATCACGTTTTTCGCAC AGAAAGTTACTTTTTCTTTCTCCACCCAAAGAAACCATAGAAAGGTTGCTGCAACACATCTTACTATTGCCAACTGACACAACTCTTCCCAACCTTTATG TTACCCAATTCAATGCAAAGCTCCAGAGTGTTTTAGCAGATAAGGGATTCAAAGAGCTCATCAATAACTATCTAAGTTCCAATTCTGCCGTCAGTCACCT AATGAGGTTCCTGTTTATAGCCGTCTCTTCGATAGATATGAAATCTGGCTACCCATCTCTTGAAAATTTCAAGACAGCATTTTCAAGCTTCCAAAGGCAA CCAAAGCTAGAATGCATAAAAGATTGCTCTATACTGGAACTCTTCATGCTGGTATGCATGAGGAGATTGGAATGGAAGGAGCAGAACTCCTATAACTTCA ATTCTGTCATGAAAGAGTACAAATCTATCAACGATCAATTCAAGGCATCCGATAACTATGCAAGAAACGTATGCTTGAGGGCATTTGAACATCTTCTGCA GCGTGATCTGATATGTTTCCTCGACAAACGAGGAAATGGTCAGTCTTTGGAGTTCCGCCCAGCAAAGTGTCTAATCTCGCACATCGAGCTCCAACAAGGG ATCGAAGCATATCGTTCATGTCCCGTATGTTCCTTGCATCTTGCTTCTTACTTTCAGTCCATGTTCATCTGA
AA sequence Show only first row Show all	>Lus10007944 pacid=23162325 polypeptide=Lus10007944 locus=Lus10007944.g ID=Lus10007944.BGIv1.0 annot-version=v1.0 MTNQKYAQEAQILLRSRLCNPNFVFKALSDSPDSNYSKLKFIVSSSITEACNNSLLLLGPRGSGKTAVLELVLNDLLEEYPDMISVIRLNGLIHNDDNCA FKEIARQLCMEHQLLFSKMASFDDNSQFLIAMLRECGLAHKTIVFVLEEFDLFAQGKQRLLYSLLDAMQSISSQAVIIGVSCKLDADQLLEKRVRSRFSH RKLLFLSPPKETIERLLQHILLLPTDTTLPNLYVTQFNAKLQSVLADKGFKELINNYLSSNSAVSHLMRFLFIAVSSIDMKSGYPSLENFKTAFSSFQRQ PKLECIKDCSILELFMLVCMRRLEWKEQNSYNFNSVMKEYKSINDQFKASDNYARNVCLRAFEHLLQRDLICFLDKRGNGQSLEFRPAKCLISHIELQQG IEAYRSCPVCSLHLASYFQSMFI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01120		ORC4, ATORC4	origin recognition complex sub...		Lus10007944 [exp]	0	1
AT1G04020		ROW1, ATBARD1, ...	breast cancer associated RING ...		Lus10022895 [exp]	1.4	0.9620
AT2G01120		ORC4, ATORC4	origin recognition complex sub...		Lus10013481 [exp]	5.9	0.9400
AT5G22110		DPB2, CYL2, DBP...	CYCLOPS 2, DNA polymerase epsi...		Lus10042296 [exp]	6.3	0.9387
AT1G47230		CYCA3;4	CYCLIN A3;4 (.1.2)		Lus10024822 [exp]	8.1	0.9487
AT5G19330		ARIA	ARM repeat protein interacting...		Lus10042583 [exp]	8.5	0.9440
AT3G59550		ATSYN3, SYN3, A...	SISTER CHROMATID COHESION 1 PR...		Lus10037478 [exp]	9.5	0.9375
AT2G16440		MCM4	MINICHROMOSOME MAINTENANCE 4, ...		Lus10017491 [exp]	10.1	0.9401
AT5G44635		MCM6	MINICHROMOSOME MAINTENANCE 6, ...		Lus10036244 [exp]	10.2	0.9450
AT4G16970			Protein kinase superfamily pro...		Lus10004357 [exp]	11.4	0.9359
AT3G17030			Nucleic acid-binding proteins ...		Lus10037764 [exp]	11.6	0.9297

Compare expression of checked genes

Lus10007944 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.