Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63160 605 / 0 EMB2811, RFC2 EMBRYO DEFECTIVE 2811, replication factor C 2 (.1) AT1G21690 212 / 2e-66 RFC4, EMB1968 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) AT1G77470 209 / 7e-65 EMB2810, RFC5, RFC3 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) AT5G27740 115 / 2e-29 RFC3, EMB251, EMB161, EMB2775 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) AT5G22010 65 / 2e-11 ATRFC1 replication factor C 1, replication factor C1 (.1) AT1G14460 64 / 5e-11 AAA-type ATPase family protein (.1) AT1G24290 60 / 8e-10 AAA-type ATPase family protein (.1) AT2G02480 56 / 2e-08 STI STICHEL, AAA-type ATPase family protein (.1) AT5G45720 50 / 2e-06 AAA-type ATPase family protein (.1.2) AT1G04730 46 / 3e-05 CTF18 CHROMOSOME TRANSMISSION FIDELITY 18, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024504 [exp] 676 / 0 AT1G63160 615 / 0.0 EMBRYO DEFECTIVE 2811, replication factor C 2 (.1) Lus10025689 [exp] 221 / 2e-69 AT1G77470 568 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Lus10018144 [exp] 219 / 1e-68 AT1G77470 564 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Lus10028543 [exp] 200 / 1e-61 AT1G21690 563 / 0.0 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) Lus10019391 [exp] 105 / 1e-25 AT5G27740 643 / 0.0 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Lus10043248 [exp] 87 / 1e-18 AT5G27740 561 / 0.0 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Lus10013372 [exp] 78 / 1e-15 AT5G22010 1128 / 0.0 replication factor C 1, replication factor C1 (.1) Lus10041764 [exp] 72 / 1e-13 AT5G27740 269 / 3e-84 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Lus10028316 [exp] 70 / 5e-13 AT5G27740 271 / 6e-86 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G123200 [exp] 620 / 0 AT1G63160 587 / 0.0 EMBRYO DEFECTIVE 2811, replication factor C 2 (.1) Potri.002G081200 [exp] 213 / 2e-66 AT1G77470 577 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Potri.005G181300 [exp] 201 / 6e-62 AT1G21690 551 / 0.0 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) Potri.002G080100 [exp] 163 / 5e-47 AT1G21690 505 / 1e-180 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) Potri.019G040000 [exp] 102 / 1e-24 AT5G27740 621 / 0.0 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Potri.001G213900 [exp] 68 / 3e-12 AT5G22010 1117 / 0.0 replication factor C 1, replication factor C1 (.1) Potri.003G044900 [exp] 67 / 6e-12 AT2G02480 1147 / 0.0 STICHEL, AAA-type ATPase family protein (.1) Potri.003G093400 [exp] 61 / 4e-10 AT5G27740 182 / 2e-53 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Potri.004G230300 [exp] 60 / 1e-09 AT2G02480 1189 / 0.0 STICHEL, AAA-type ATPase family protein (.1) Potri.011G023800 [exp] 58 / 3e-09 AT1G24290 689 / 0.0 AAA-type ATPase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0604 [flax] [poplar] post-AAA PF08542 [flax] [poplar] Rep_fac_C Replication factor C C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10008003 pacid=23161759 polypeptide=Lus10008003 locus=Lus10008003.g ID=Lus10008003.BGIv1.0 annot-version=v1.0 ATGGCGTCGTCTTCAGTCTCTGCGGGCGGTACCTACGACATGCCATGGGTGGAGAAGTACCGGCCGACCAAAGTGGTCGACATAGTCGGCAATGAGGACG CCATCTCCCGCCTCCAAGTCATCGCCATCGACGGAAACATGCCTAATTTGATTTTATCTGGACCGCCTGGAACTGGGAAAACGACGAGTATACTCGCTCT TGCTCATGAGCTTCTTGGGCCGAGCTACAAGGATGCAGTGTTGGAGCTGAATGCATCTGATGACAGGGGAATAGATGTTGTGAGGCACAAAATCAAAATG TTTGCACAAATGAAGCTAACACTTCCTCCTGGAAGGCAGAAAATCGTGATTCTCGATGAAGCTGATAGCATGACATCAGGAGCACAACAAGCCTTGAGGC GGACTATGGAAATATACTCGAGTACCACCCGCTTTGCTCTTGCTTGCAATACGTCATCTAAAGTTATTGAGCCTATTCAAAGTAGATGTGCTGTTGTCCG ATTTTCAAGACTGTCAGATCAGGAGATCCTTGGTCGTTTGATGGTGGTGGTGGATGCAGAAAAGGTTCCGTACGTCCCTGAAGGTCTTGAAGCCATCATT TTCACAGCTGATGGGGATATGAGACAGGCATTGAATAACTTGCAAGCTACATTCAGTGGATTCCGGTTTGTCAACCAGGAAAATGTGTTTAAGGTGTGCG ACCAGCCTCATCCTCTGCACGTGAAAAATATGGTGCGTCAAGTTATAGAGGGAAAGTTCGATGATGCATGCTCTGGTTTAAAGCAGCTGTACGACCTTGG TTATTCCCCGACTGATATTATCACAACTCTCTTCCGGATCATAAAAAATTGTGACATGGCGGAGTATCTTAAACTAGAATTCATGAAGGAAACTGGGTTT GCCCACATGAGAATCTGTGATGGAGTTGGTTCCTACCTTCAGATGTGCGGCCTCTTGGCTAAACTTGCCCTGGTTCGTGACACTACCAAGGCAGTATGA
AA sequence Show only first row Show all	>Lus10008003 pacid=23161759 polypeptide=Lus10008003 locus=Lus10008003.g ID=Lus10008003.BGIv1.0 annot-version=v1.0 MASSSVSAGGTYDMPWVEKYRPTKVVDIVGNEDAISRLQVIAIDGNMPNLILSGPPGTGKTTSILALAHELLGPSYKDAVLELNASDDRGIDVVRHKIKM FAQMKLTLPPGRQKIVILDEADSMTSGAQQALRRTMEIYSSTTRFALACNTSSKVIEPIQSRCAVVRFSRLSDQEILGRLMVVVDAEKVPYVPEGLEAII FTADGDMRQALNNLQATFSGFRFVNQENVFKVCDQPHPLHVKNMVRQVIEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNCDMAEYLKLEFMKETGF AHMRICDGVGSYLQMCGLLAKLALVRDTTKAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63160		EMB2811, RFC2	EMBRYO DEFECTIVE 2811, replica...		Lus10008003 [exp]	0	1
AT3G22430			unknown protein		Lus10006278 [exp]	8.7	0.7854
AT3G63300		FKD1	FORKED 1 (.1.2)		Lus10004079 [exp]	10.1	0.8721
AT1G51130			Nse4, component of Smc5/6 DNA ...		Lus10039205 [exp]	10.2	0.8136
AT1G58470		XF41, ATRBP1	RNA-binding protein 1 (.1)		Lus10007721 [exp]	11.0	0.8525
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10039738 [exp]	15.4	0.8699
AT3G61250	MYB	LMI2, ATMYB17	LATE MERISTEM IDENTITY2, myb d...		Lus10039214 [exp]	16.4	0.8496
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10007660 [exp]	19.9	0.8561
AT4G35160			O-methyltransferase family pro...		Lus10038331 [exp]	21.4	0.7287
AT3G22810			Plant protein of unknown funct...		Lus10014703 [exp]	27.7	0.8527
AT2G28470		BGAL8	beta-galactosidase 8 (.1.2)		Lus10006733 [exp]	29.4	0.8435

Compare expression of checked genes

Lus10008003 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.