Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02320 229 / 3e-69 MYB MYB3R-5, ATMYB3R5 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2) AT4G32730 230 / 9e-68 MYB ATMYB3R-1, PC-MYB1, ATMYB3R1 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) AT5G11510 222 / 1e-64 MYB ATMYB3R-4, AtMYB3R4 myb domain protein 3R4, myb domain protein 3r-4 (.1.2) AT3G09370 206 / 4e-61 MYB ATMYB3R-3, ATMYB3R3 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) AT4G00540 193 / 4e-57 MYB MYB3R-2, PC-MYB2, ATMYB3R2 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-2, myb domain protein 3r2 (.1.2) AT4G18770 144 / 1e-38 MYB ATMYB98 myb domain protein 98 (.1) AT3G27785 137 / 5e-36 MYB PGA37, ATMYB118 PLANT GROWTH ACTIVATOR 37, myb domain protein 118 (.1) AT5G58850 136 / 1e-35 MYB ATMYB119 myb domain protein 119 (.1) AT5G11050 132 / 2e-34 MYB ATMYB64 myb domain protein 64 (.1) AT5G40360 128 / 3e-33 MYB ATMYB115 myb domain protein 115 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011687 [exp] 227 / 3e-65 AT4G32730 502 / 3e-158 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Lus10022136 [exp] 224 / 9e-65 AT4G32730 682 / 0.0 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Lus10025351 [exp] 210 / 2e-62 AT3G09370 456 / 8e-157 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) Lus10024394 [exp] 208 / 1e-61 AT3G09370 456 / 8e-157 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) Lus10038623 [exp] 206 / 2e-58 AT4G32730 376 / 3e-118 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Lus10027695 [exp] 139 / 6e-36 AT4G18770 276 / 1e-87 myb domain protein 98 (.1) Lus10022256 [exp] 136 / 1e-35 AT3G27785 175 / 2e-50 PLANT GROWTH ACTIVATOR 37, myb domain protein 118 (.1) Lus10042111 [exp] 135 / 2e-35 AT4G18770 249 / 8e-79 myb domain protein 98 (.1) Lus10013084 [exp] 133 / 3e-35 AT3G27785 183 / 6e-54 PLANT GROWTH ACTIVATOR 37, myb domain protein 118 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G123800 [exp] 295 / 8e-96 AT3G09370 231 / 3e-70 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) Potri.006G085600 [exp] 222 / 1e-66 AT5G02320 477 / 9e-164 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2) Potri.006G241700 [exp] 225 / 5e-65 AT5G11510 696 / 0.0 myb domain protein 3R4, myb domain protein 3r-4 (.1.2) Potri.018G038000 [exp] 223 / 4e-64 AT4G32730 748 / 0.0 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Potri.014G079300 [exp] 209 / 6e-62 AT4G32730 266 / 5e-80 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Potri.012G082000 [exp] 137 / 1e-35 AT4G18770 268 / 2e-85 myb domain protein 98 (.1) Potri.005G118500 [exp] 136 / 2e-35 AT4G18770 234 / 2e-72 myb domain protein 98 (.1) Potri.015G077700 [exp] 133 / 2e-34 AT4G18770 300 / 4e-98 myb domain protein 98 (.1) Potri.001G250000 [exp] 133 / 4e-34 AT5G58850 221 / 7e-67 myb domain protein 119 (.1) Potri.001G347200 [exp] 130 / 2e-33 AT3G27785 223 / 8e-68 PLANT GROWTH ACTIVATOR 37, myb domain protein 118 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10008010 pacid=23161774 polypeptide=Lus10008010 locus=Lus10008010.g ID=Lus10008010.BGIv1.0 annot-version=v1.0 ATGGATGTTTTACCATTCTCGGTTTATTTGGATAGTCGAAGCATCATTATACCTAATACGGTTTCTTTCCAGAGCAGGGCAACTGGTCCAACTAGGCATT CAGGAAAAGGGCGCTGGACGCAGGACGAGGATCATCTTCTGATAAAATCTGTACACAAGTTCCAGGGAAAGAGATGGAGAAAAATAGCTGAATGTCTCCC AGGTAGGTCAGTTTCCCAGTGCTTTTACAGATGGAGTCGGGTCCTGAATCCAGCGATTTACAAAGGAACATGGACAAAAGAGGAAGATGATTGCATCAGA GAGTTGGTTCGAATGCATGGACTCAGAAGATGGTCAGTCATTGCTAGTTTTTTACCGGGTCGATTAGGCAAGCAATGCAGAGAGAGGTGGCACAACCATT TAGATCCAGGCATAAAGGAAGGTTGCTGGACAGAAGAGGAGGAGAGGATTCTTACATTTTACCATGAGATTTATGGAAACAAATGGGCAGCTTTGGCTAG GTATCTTCCTGGAAGGAGCGACAACGCGATAAAGAACCACTGGAACTGTGTTAAGAAGAACAAATTACAGACTATGTCAGCAGCTAATGGTAGAGCTGTG GATCAACCGACATGTGCGTGTATGGAACAAGGCCAGAGTCTCGACGGAACATGTTCTCTGATTGAGGCTAAGACGACGAACGTAATTGATGTGGGTTCAA GAGAATTGCTAACCTTGGATCTCAAACTCCAATGTCATGTCTCAGCTCCAAAAAGTCCTTGTCATCCTGAAGCTGAATCCCCTGGAATTCCCAGACAAAG AAAGGTCCTTGGTGTTCTAAATCAGAACATAATTGAGGGAACCCCGTTTCTTCATTCTTTAAGTAGTGATACATTCAGTAAGCACAATGGGAAAACTACT AGAGGAAACAATGTCCAGAAAGACTGTACTGCTGTTGGATCACCGAATAAGGACGATCATCATCTTCTGGGTCAAAGTGTGGCTTGGTCTACTCCCGGCA GCTTAGTTCTCAGCTGCAAAGGATACAATAGCGCAGAATCCATACTGAGGAATTCAGCAAAGACCTTCAGAAATATTCCTGCCATCATAAGGAAGAGAAG TTCCAGAACAAGAACAGTGCGTGCTGACTGTATTTCTGAAGGTAGCATCTTACATTCTGGGCAGCAAGGATTCCTTTACAAGTCTTATCCCTCAGTCGCC ATTCAATCTCTAAGAAGGAACCTGAACGATGCTTTTGACAGTGAGAGCGCCACAGTTGCTGCTTCCGAGGCTAACAACAACTCGGTTCCTGCATCCATCA ATAGTATTTAG
AA sequence Show only first row Show all	>Lus10008010 pacid=23161774 polypeptide=Lus10008010 locus=Lus10008010.g ID=Lus10008010.BGIv1.0 annot-version=v1.0 MDVLPFSVYLDSRSIIIPNTVSFQSRATGPTRHSGKGRWTQDEDHLLIKSVHKFQGKRWRKIAECLPGRSVSQCFYRWSRVLNPAIYKGTWTKEEDDCIR ELVRMHGLRRWSVIASFLPGRLGKQCRERWHNHLDPGIKEGCWTEEEERILTFYHEIYGNKWAALARYLPGRSDNAIKNHWNCVKKNKLQTMSAANGRAV DQPTCACMEQGQSLDGTCSLIEAKTTNVIDVGSRELLTLDLKLQCHVSAPKSPCHPEAESPGIPRQRKVLGVLNQNIIEGTPFLHSLSSDTFSKHNGKTT RGNNVQKDCTAVGSPNKDDHHLLGQSVAWSTPGSLVLSCKGYNSAESILRNSAKTFRNIPAIIRKRSSRTRTVRADCISEGSILHSGQQGFLYKSYPSVA IQSLRRNLNDAFDSESATVAASEANNNSVPASINSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02320	MYB	MYB3R-5, ATMYB3...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10008010 [exp]	0	1
					Lus10036703 [exp]	1.0	0.9680
AT5G14490	NAC	ANAC085	NAC domain containing protein ...		Lus10003668 [exp]	1.7	0.9506
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10023281 [exp]	2.0	0.9395
AT1G72100			late embryogenesis abundant do...		Lus10000723 [exp]	2.0	0.9645
AT1G56220			Dormancy/auxin associated fami...		Lus10020661 [exp]	4.2	0.9273
					Lus10000348 [exp]	5.2	0.9073
AT1G25440	CO	COL16	B-box type zinc finger protein...		Lus10041449 [exp]	5.5	0.9052
AT1G80920		AtToc12, AtJ8, ...	translocon at the outer envelo...		Lus10024067 [exp]	6.3	0.9105
AT5G02020		SIS	Salt Induced Serine rich, unkn...		Lus10021101 [exp]	9.4	0.9037
AT5G63160		BT1	BTB and TAZ domain protein 1 (...		Lus10033038 [exp]	9.9	0.9266

Compare expression of checked genes

Lus10008010 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.