Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 172 / 4e-44 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G69550 164 / 1e-41 disease resistance protein (TIR-NBS-LRR class) (.1) AT1G27180 148 / 2e-36 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G27170 147 / 5e-36 transmembrane receptors;ATP binding (.1.2) AT2G17050 121 / 5e-28 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G36140 121 / 7e-28 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G17680 117 / 7e-27 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G45260 114 / 6e-26 WRKY ATWRKY52, SLH1, RRS1 SENSITIVE TO LOW HUMIDITY 1, RESISTANT TO RALSTONIA SOLANACEARUM 1, ARABIDOPSIS THALIANA WRKY DOMAIN PROTEIN 52, Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT3G51560 114 / 1e-25 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G63870 110 / 1e-24 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001039 [exp] 909 / 0 AT5G36930 248 / 4e-70 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10035674 [exp] 731 / 0 AT5G36930 410 / 1e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10037406 [exp] 654 / 0 AT5G36930 395 / 5e-116 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10042714 [exp] 643 / 0 AT5G36930 411 / 3e-124 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10020238 [exp] 628 / 0 AT1G69550 391 / 7e-117 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10017143 [exp] 617 / 0 AT1G27180 387 / 6e-116 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10018308 [exp] 565 / 0 AT1G69550 147 / 1e-35 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10004115 [exp] 507 / 1e-157 AT5G27970 689 / 0.0 ARM repeat superfamily protein (.1.2) Lus10023272 [exp] 478 / 7e-153 AT5G36930 423 / 4e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G004599 [exp] 192 / 9e-51 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.004G088500 [exp] 186 / 8e-49 AT1G69550 647 / 0.0 disease resistance protein (TIR-NBS-LRR class) (.1) Potri.T005501 [exp] 185 / 2e-48 AT5G36930 612 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.012G053200 [exp] 184 / 5e-48 AT1G27170 1187 / 0.0 transmembrane receptors;ATP binding (.1.2) Potri.019G003285 [exp] 181 / 4e-47 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003942 [exp] 179 / 2e-46 AT5G36930 591 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.007G142600 [exp] 174 / 3e-45 AT5G36930 535 / 5e-173 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.001G066500 [exp] 172 / 1e-44 AT5G36930 462 / 2e-146 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.007G143300 [exp] 170 / 2e-43 AT5G36930 519 / 2e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002066 [exp] 169 / 2e-43 AT5G36930 631 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10008026 pacid=23161762 polypeptide=Lus10008026 locus=Lus10008026.g ID=Lus10008026.BGIv1.0 annot-version=v1.0 ATGAGCCAGGATCATTCCCTTCAGCTGTTCAGCATGCATGCTTTCCGTATGCATCGCCCTCCAAAAGATTATGCAACTCTATGTGGTGAATTCATAGAAG CTGCTGCAAAGCTACCTTTAGCTCTTAAGGTTCTTGGGTCACTCTTGTTTCTTAGGGATAGACAGTTGTGGGAAGAGAAGTTGTTGGAACTGAAAGAAGT GCCTGCTACTACTAATAAGGTGCAGCAGAGATTGAAGATTAGTTACAATGAGCTGACCGATAACGAAAAACACATATTTCTTGACATAGTCTGTTTTTTC ATTGGTGAAAATAAAGAACTGCCTTTTCATATGTGGAGAGACTGTAACTTTTATCCAGAAAGTGGGATTAGGACTCTTGTTTATAGATCCTTGGTAAAAA TCGACGAGAGAAATCAGTTCTGGATGCATGATTTGCTTAGAGGCCTTGGCAGAGCCATTGTTATTGAGGAAGATGTTAAGCGCCCATGGAGGCGCAGCAG GATATGGTCCAATGAGGATGCTGTGAATATGTTGAAAAATGGAGAGGGAACTGATCGGGTCGAAATGCTTATGGTTGACATGACACATGGAGATAATTGT GAATACACACTCACAGACAAACAATTTGAGAAATTGCCAGCGCTGAAGTATCTAAAAATGATGCATGGAACACTGGAGGGAGACTTCAGTCGAATTCTTC CAGATATCCGTTGGATTACGCTGTATCACTGCTTTGAATTCCCTACCGATCTTAACTTAAATAAAGTCGTAATTCTCGATTTGCAGGATTCTAATGTAAC AGATGACTGGGAAGGATGGAAGAGACTTCAGGCGGCAAACAATCTGAAAGTTATAAATCTGTATGGCTGCCATTTATTACGCAAAGTTCCCGACTTGTCC CAATGCGGAAGCATAGAGTTGATAGATCTCAGCTTATGTTTCTGGATGAAAGGGGTACTGGACATTGGCAGCTTCAGGAATCTGAAAGTGGTTAGGCTTC TAAGAAGTGGAATAACAGAGTTGACAGGTGAAATTGGAAAGCTTAAAAAACTCGAAGAGATGATAACGGGGAAGTTGGCCTGGAGAGCTGAAGAAGAAGA AGTACCACTCTTCCCTACAGCCTTAAAACGCCTAGCCATCTCGTCTCCTAAGGTTCCGAATCTCATGGAGCTTAAAGACCTAGTGGAGCTATGCTTTTTG GACTGTGATACCGCTCCCGAAATTCCTGCTTCCATTTGGCAACTCTTGAAGCTTACGATTATGGAGTTGCATAACTGCAACTACAATTGTGGTGGTAATA GTAGTATTAGTCTACTGAAGGAGGATCAGGAAGGTTCCCTCCCATCATCTCTAACTCGCCTCATCATTAACCGGTTTCGCGGTTTGACTAGACTGCCAAA TCTTGCAAATCTGAATCACTTAGTGGAGCTACGTCTGTTTCACTTGGAACTGAGTGAAATCCTTGGCTTGGGTGAGCTGAAAGTGCTGATCAGGTTCTCG GTGAACTGGGGCGGTCTTTGGTACATCTGGAAGCTAGTGGATGTGGCAGGCTGGCCATCCAGGGCCTCGAGGGAGCTGGCCGTGGTGCAAGACGATGACA GTCATATCCCCCACGTTTTACGCCAGTATCTTGTTCAACTCGAACGATTTCCGGACCTCTCGCGTCTCCAAGAACTGAAACAACTGCAGGTCACAGGGTG GAGACACATGCCCGCTGTGGTCACAGGGCTCGAGAGTCTGAAATTGTTACAAACACTAGAAATTAAGGCCTGCAGGTCAGTCAGGAGGCTGGTTGACGTA TCGGGCCTCGAGAACCTGGAGACTCTTGATGTCAGTGGGTGCATACGGCCGGTCGAAGTGACTGGCCTCGAGAGGCTGAAATCGTTGGAGACGTTACAAA TGAGGGGTTGCAAGTCAGTCAGGAGGTTGGCTGATGTGTCGGGCCTCAAGAATTTGGAGGAGCTCGATGTCAGCGGGTGCGTACTGTTGGTCGAGGTCAC ATGCCTCGGGAGACGGGGATCGTTGCAGAAGCTGAATATGTCTGGATGTTGGTCGATTCGGGAGCTTCCAGATGTATTCGGGTTGGAGGATTTGGATGAT TTGGACGTAATTGAATGCAGAGAGTTGGTTAAGGTCACAAGTTTAGAGAATTTGGGGATGTTAAGGAAGTTGAACATGTTAGGTTGCAAGTCTTTGAAGG AGTTGCCAGACATGTCTGGTCTGAAGAACCTATGGGATTTGAATCTGAAGGGATGCTAA
AA sequence Show only first row Show all	>Lus10008026 pacid=23161762 polypeptide=Lus10008026 locus=Lus10008026.g ID=Lus10008026.BGIv1.0 annot-version=v1.0 MSQDHSLQLFSMHAFRMHRPPKDYATLCGEFIEAAAKLPLALKVLGSLLFLRDRQLWEEKLLELKEVPATTNKVQQRLKISYNELTDNEKHIFLDIVCFF IGENKELPFHMWRDCNFYPESGIRTLVYRSLVKIDERNQFWMHDLLRGLGRAIVIEEDVKRPWRRSRIWSNEDAVNMLKNGEGTDRVEMLMVDMTHGDNC EYTLTDKQFEKLPALKYLKMMHGTLEGDFSRILPDIRWITLYHCFEFPTDLNLNKVVILDLQDSNVTDDWEGWKRLQAANNLKVINLYGCHLLRKVPDLS QCGSIELIDLSLCFWMKGVLDIGSFRNLKVVRLLRSGITELTGEIGKLKKLEEMITGKLAWRAEEEEVPLFPTALKRLAISSPKVPNLMELKDLVELCFL DCDTAPEIPASIWQLLKLTIMELHNCNYNCGGNSSISLLKEDQEGSLPSSLTRLIINRFRGLTRLPNLANLNHLVELRLFHLELSEILGLGELKVLIRFS VNWGGLWYIWKLVDVAGWPSRASRELAVVQDDDSHIPHVLRQYLVQLERFPDLSRLQELKQLQVTGWRHMPAVVTGLESLKLLQTLEIKACRSVRRLVDV SGLENLETLDVSGCIRPVEVTGLERLKSLETLQMRGCKSVRRLADVSGLKNLEELDVSGCVLLVEVTCLGRRGSLQKLNMSGCWSIRELPDVFGLEDLDD LDVIECRELVKVTSLENLGMLRKLNMLGCKSLKELPDMSGLKNLWDLNLKGC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10008026 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Lus10001040 [exp]	1.4	0.9123
AT5G36930			Disease resistance protein (TI...		Lus10001039 [exp]	2.0	0.8904
AT5G36930			Disease resistance protein (TI...		Lus10008027 [exp]	3.2	0.8034
AT5G46680			Pentatricopeptide repeat (PPR-...		Lus10039036 [exp]	21.8	0.8360
AT5G05970		NEDD1	NEURAL PRECURSOR CELL EXPRESSE...		Lus10001024 [exp]	26.7	0.7735
AT4G00060		MEE44	maternal effect embryo arrest ...		Lus10015886 [exp]	30.7	0.8215
AT1G12930			ARM repeat superfamily protein...		Lus10041503 [exp]	31.7	0.7862
AT3G06290		AtSAC3B	yeast Sac3 homolog B, SAC3/GAN...		Lus10012769 [exp]	32.2	0.8202
AT2G36850		CHOR, ATGSL8, A...	CHORUS, glucan synthase-like 8...		Lus10040891 [exp]	32.7	0.8094
AT2G36070		ATTIM44-2	translocase inner membrane sub...		Lus10024888 [exp]	33.5	0.7946

Compare expression of checked genes

Lus10008026 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.