Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 198 / 4e-57 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G66090 175 / 9e-52 Disease resistance protein (TIR-NBS class) (.1) AT1G72890 173 / 9e-51 Disease resistance protein (TIR-NBS class) (.1), Disease resistance protein (TIR-NBS class) (.2) AT5G41750 176 / 1e-49 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G58120 174 / 1e-48 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G72940 166 / 1e-48 Toll-Interleukin-Resistance (TIR) domain-containing protein (.1) AT1G63880 172 / 2e-48 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G72910 165 / 3e-48 Toll-Interleukin-Resistance (TIR) domain-containing protein (.1) AT1G72950 165 / 3e-48 Disease resistance protein (TIR-NBS class) (.1) AT5G40910 171 / 1e-47 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001040 [exp] 480 / 8e-174 AT5G36930 167 / 2e-47 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10018309 [exp] 458 / 3e-162 AT1G27180 245 / 1e-71 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10017143 [exp] 455 / 1e-152 AT1G27180 387 / 6e-116 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10037406 [exp] 456 / 3e-152 AT5G36930 395 / 5e-116 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10029628 [exp] 461 / 5e-152 AT1G27180 462 / 1e-138 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10035674 [exp] 455 / 1e-149 AT5G36930 410 / 1e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10042714 [exp] 433 / 9e-144 AT5G36930 411 / 3e-124 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10010574 [exp] 405 / 9e-133 AT5G36930 397 / 4e-119 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10020238 [exp] 404 / 2e-132 AT1G69550 391 / 7e-117 disease resistance protein (TIR-NBS-LRR class) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G019710 [exp] 232 / 1e-72 AT5G36930 445 / 2e-144 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002568 [exp] 230 / 5e-72 AT5G36930 439 / 2e-142 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G046000 [exp] 229 / 1e-70 AT5G36930 496 / 1e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002428 [exp] 223 / 3e-69 AT5G36930 387 / 2e-122 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 231 / 9e-69 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002066 [exp] 231 / 1e-68 AT5G36930 631 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 229 / 3e-68 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002400 [exp] 228 / 5e-68 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G052000 [exp] 228 / 7e-68 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002200 [exp] 227 / 7e-68 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10008027 pacid=23161767 polypeptide=Lus10008027 locus=Lus10008027.g ID=Lus10008027.BGIv1.0 annot-version=v1.0 ATGGAGTTGGAGCTGATGCCTTCAGGCGAAGGAACAGCAGTTCAAACATCATGGGCAGAACGGAAACCTGCCGAGTATGAGGTCTTTTTGAGCTTTAGAG GCCCTGACGTTCGCAAAAGCTTTGCCGATTGTCTATACAGCTATTTGGTCCGTTCCAAAATCCGTACATTCAGGGACGAGGAAGAGCTTCGCAAGGGGGA GAGTATTGGGCCTTCCTCGGTTCAGGCTATCACCGAGTCAAAGATTTACATCCCGATTTTCACAAAGAGCTATGCTGCTAGCAAATGGTGCCTTCAAGAA CTAGCCGAGATGGTTCAGTGTTGGAAACAAGGAAAAGGACACATCATATTGCCCATTTTCTATTTCATGGACCCCAGAGATATGCGGCATCAAGCTGGTC TTTACGAGGTGGCATTTGAACAACACAGTAAGAAGCATGACCCCATAACAGTACAAGAATGGAGGACAGCTCTCCAAGAAGTTGGGCAAATGAAAGGATG GCACGTTACTGAATCAGATGGACAGGGAGCTGTGATAGATGAGGATTTTTCTAAGGTGGAGTTGCATCTGAGGAGTAACTATACTTTAGTCACTGAAGAG CTGGTGGGAATCGATTGTCACATGCAAGAAGTGACGAGATTGTTGAATCTAGACTCCGCAGATTTGAAGGTGGTCGGGATTCATGGAATTGGCGGTATGG GGAAAACTACCATAGCCAAAGCCGTGTATGACAGCATCTGTACCGGTTTTAATCGCTGCTGTTTCTTTGAAAATGTTAGAGAAATGCTGTCGAAGACTGA TGGCACAATAGCTTTACAGAGTAAGTTCATCTCTAGCATTCTGAGGGATGATGTCAGGTTAAAGATGCTAGTGAAGGGGTCAACATAA
AA sequence Show only first row Show all	>Lus10008027 pacid=23161767 polypeptide=Lus10008027 locus=Lus10008027.g ID=Lus10008027.BGIv1.0 annot-version=v1.0 MELELMPSGEGTAVQTSWAERKPAEYEVFLSFRGPDVRKSFADCLYSYLVRSKIRTFRDEEELRKGESIGPSSVQAITESKIYIPIFTKSYAASKWCLQE LAEMVQCWKQGKGHIILPIFYFMDPRDMRHQAGLYEVAFEQHSKKHDPITVQEWRTALQEVGQMKGWHVTESDGQGAVIDEDFSKVELHLRSNYTLVTEE LVGIDCHMQEVTRLLNLDSADLKVVGIHGIGGMGKTTIAKAVYDSICTGFNRCCFFENVREMLSKTDGTIALQSKFISSILRDDVRLKMLVKGST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10008027 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Lus10008026 [exp]	3.2	0.8034
AT5G36930			Disease resistance protein (TI...		Lus10001039 [exp]	49.5	0.7110
AT5G17760			P-loop containing nucleoside t...		Lus10041777 [exp]	67.5	0.6649
AT1G12920		ERF1-2	eukaryotic release factor 1-2 ...		Lus10014295 [exp]	75.1	0.7220
AT5G36930			Disease resistance protein (TI...		Lus10001040 [exp]	80.0	0.7037
AT1G67170			unknown protein		Lus10035371 [exp]	111.6	0.6889
AT1G58210		EMB1674	EMBRYO DEFECTIVE 1674, kinase ...		Lus10040172 [exp]	190.9	0.6531

Compare expression of checked genes

Lus10008027 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.