Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30840 215 / 5e-65 ATPUP4 purine permease 4 (.1.2) AT1G28220 90 / 2e-19 ATPUP3 purine permease 3 (.1) AT2G33750 77 / 4e-15 ATPUP2 purine permease 2 (.1.2) AT1G28230 75 / 2e-14 ATPUP1, PUP1 purine permease 1 (.1) AT1G44750 73 / 7e-14 ATPUP11 purine permease 11 (.1.2.3) AT4G18190 64 / 1e-10 ATPUP6 purine permease 6 (.1) AT4G18220 50 / 1e-06 Drug/metabolite transporter superfamily protein (.1) AT4G18210 45 / 0.0001 ATPUP10 purine permease 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002868 [exp] 391 / 2e-133 AT1G30840 388 / 7e-134 purine permease 4 (.1.2) Lus10008713 [exp] 103 / 7e-24 AT1G28220 288 / 2e-95 purine permease 3 (.1) Lus10020950 [exp] 97 / 2e-21 AT1G28220 448 / 3e-158 purine permease 3 (.1) Lus10008212 [exp] 96 / 2e-21 AT1G28220 293 / 7e-97 purine permease 3 (.1) Lus10008714 [exp] 93 / 2e-20 AT1G28220 286 / 7e-95 purine permease 3 (.1) Lus10020939 [exp] 90 / 3e-19 AT1G28220 286 / 9e-95 purine permease 3 (.1) Lus10020416 [exp] 89 / 4e-19 AT1G28220 341 / 2e-116 purine permease 3 (.1) Lus10035636 [exp] 88 / 1e-18 AT1G28220 346 / 3e-118 purine permease 3 (.1) Lus10010757 [exp] 88 / 1e-18 AT1G28220 350 / 8e-120 purine permease 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G156900 [exp] 239 / 8e-74 AT1G30840 323 / 4e-108 purine permease 4 (.1.2) Potri.001G074100 [exp] 221 / 1e-67 AT1G30840 303 / 5e-101 purine permease 4 (.1.2) Potri.005G160300 [exp] 84 / 2e-17 AT1G28220 413 / 8e-145 purine permease 3 (.1) Potri.001G352100 [exp] 78 / 2e-15 AT4G18210 398 / 1e-137 purine permease 10 (.1) Potri.002G099600 [exp] 77 / 3e-15 AT1G28220 229 / 2e-72 purine permease 3 (.1) Potri.014G043900 [exp] 72 / 2e-13 AT1G44750 434 / 2e-152 purine permease 11 (.1.2.3) Potri.001G147600 [exp] 71 / 5e-13 AT4G18210 315 / 7e-105 purine permease 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10008073 pacid=23170722 polypeptide=Lus10008073 locus=Lus10008073.g ID=Lus10008073.BGIv1.0 annot-version=v1.0 ATGGATTCCATTCAAAGGCAGGCACCACCATCATCTTCAATGAACATGCCTCTTCTGATAACAAACTACATCCTCCTCTTCGTTGGTACAGTATCTTCAA CCTTGCTCTCCCGATACTACTTCATCCACAAAGGAAGCAGCAGGTGGGTATCCACATGGGTCCAAACCGCCGCTTTCCCTCTTCTCCTACTACCCATCTA CATCCCTTACTACCTCTTCCGATCAACAACCACCCCCCGCCGTCGTCCGTTTTCCAGTTTTACCCCTCGAATCCTCTTCGTCTCCATCTTCGTGGGCCTC CTATTGGGCCTCAATAACCTCCTCTTCTCATGGGGTAACTCCTACCTCCCAGTCTCCACTTCCTCCCTCCTCTTATCCACTCAACTCATCTTCACCCTCC TCTTCTCCTTCCTCATTGTCAAACAAAAAATCACCTTCCAAAACCTCAACTCCGCCATCCTCTTGTCCCTCAGTTCCGTCCTCCTCGGACTCGGATCCTC CTCCGAAAACCCATCTCCCGGGCTGACCCGCTCCAACTACTACCTCGGGTTCGCCTGCACCGTCGGGGCCGGAATTCTCTTCGCTCTCTACTTGCCCCTT ATGGAGAAGATTTACTGCAAGATTGACTGCTACGCTATGGTGGTGGAAGTGCAGGCCGTGATGGAGGCTGCGGCTACTGGATTCGCAATGGCGGGGATGG CGGTTTCGGGTAACGGGTTTCGGGAGATGAGGAGGGAGAGCCAAGAGGTTTTTGACAAAGGGGTGGCGGTTTATTGGATTGCGGTGATCGGGAACGCTGT GACGTGGCAGCTTTGCTTTATGGGGACGGCTGGGATGGTTTATCTGACGTCGTCTATAACTGGAGGGATATGCATGGCGGCTTTACTTGGGATGAACGTG CTTGGAGGTGTTGTTGTCTACGGGGAGGCCTTTGGTGGGGTAAAGGCTGTTTCTACTGCATTGTGTGTTTGGGGATTTTGCTCCTATGGGATGTACGCTG CTGAGAAAGCCAACAAATTAGCCTATATGAATAATGATAATGATAATGATAATGTCAACGATGGCGATCGTCATAATAGTACTAGTAGTGTTGATGATCA GAAAAATGCGGATCAGACAAAGGAGAGACTTGGGGGGGGGGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNTAA
AA sequence Show only first row Show all	>Lus10008073 pacid=23170722 polypeptide=Lus10008073 locus=Lus10008073.g ID=Lus10008073.BGIv1.0 annot-version=v1.0 MDSIQRQAPPSSSMNMPLLITNYILLFVGTVSSTLLSRYYFIHKGSSRWVSTWVQTAAFPLLLLPIYIPYYLFRSTTTPRRRPFSSFTPRILFVSIFVGL LLGLNNLLFSWGNSYLPVSTSSLLLSTQLIFTLLFSFLIVKQKITFQNLNSAILLSLSSVLLGLGSSSENPSPGLTRSNYYLGFACTVGAGILFALYLPL MEKIYCKIDCYAMVVEVQAVMEAAATGFAMAGMAVSGNGFREMRRESQEVFDKGVAVYWIAVIGNAVTWQLCFMGTAGMVYLTSSITGGICMAALLGMNV LGGVVVYGEAFGGVKAVSTALCVWGFCSYGMYAAEKANKLAYMNNDNDNDNVNDGDRHNSTSSVDDQKNADQTKERLGGGGGGGXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX X

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30840		ATPUP4	purine permease 4 (.1.2)		Lus10008073 [exp]	0	1
AT5G26650	MADS	AGL36	AGAMOUS-like 36 (.1)		Lus10016180 [exp]	3.2	0.8305
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10031579 [exp]	4.5	0.8037
AT1G22370		ATUGT85A5	UDP-glucosyl transferase 85A5 ...		Lus10015747 [exp]	6.2	0.7434
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10031172 [exp]	11.0	0.7859
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10040325 [exp]	11.5	0.7885
AT4G27670		HSP21	heat shock protein 21 (.1)		Lus10014876 [exp]	12.5	0.7978
AT2G28680			RmlC-like cupins superfamily p...		Lus10040867 [exp]	12.6	0.7175
AT2G18370			Bifunctional inhibitor/lipid-t...		Lus10001432 [exp]	15.0	0.7516
AT3G19920			unknown protein		Lus10010180 [exp]	15.5	0.7434
AT4G34850		LAP5	LESS ADHESIVE POLLEN 5, Chalco...		Lus10042388 [exp]	18.7	0.7103

Compare expression of checked genes

Lus10008073 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.