Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15460 870 / 0 ATBOR4 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) AT4G32510 862 / 0 HCO3- transporter family (.1) AT5G25430 855 / 0 HCO3- transporter family (.1) AT1G74810 843 / 0 BOR5 HCO3- transporter family (.1) AT3G62270 733 / 0 HCO3- transporter family (.1) AT2G47160 729 / 0 AtBOR1, BOR1 REQUIRES HIGH BORON 1, HCO3- transporter family (.1.2) AT3G06450 683 / 0 HCO3- transporter family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013116 [exp] 1269 / 0 AT1G15460 932 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Lus10019443 [exp] 813 / 0 AT1G15460 888 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Lus10038060 [exp] 729 / 0 AT3G62270 1155 / 0.0 HCO3- transporter family (.1) Lus10032651 [exp] 721 / 0 AT3G62270 1048 / 0.0 HCO3- transporter family (.1) Lus10043299 [exp] 696 / 0 AT1G15460 749 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Lus10009995 [exp] 689 / 0 AT3G62270 1054 / 0.0 HCO3- transporter family (.1) Lus10043101 [exp] 640 / 0 AT2G47160 951 / 0.0 REQUIRES HIGH BORON 1, HCO3- transporter family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G031700 [exp] 954 / 0 AT1G15460 947 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Potri.006G249800 [exp] 953 / 0 AT1G15460 924 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Potri.003G059700 [exp] 922 / 0 AT1G15460 964 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Potri.001G174500 [exp] 914 / 0 AT1G15460 959 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Potri.006G154700 [exp] 884 / 0 AT1G15460 894 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Potri.008G100300 [exp] 736 / 0 AT3G62270 1091 / 0.0 HCO3- transporter family (.1) Potri.002G191000 [exp] 734 / 0 AT2G47160 1152 / 0.0 REQUIRES HIGH BORON 1, HCO3- transporter family (.1.2) Potri.014G116000 [exp] 720 / 0 AT3G62270 1113 / 0.0 HCO3- transporter family (.1) Potri.012G081800 [exp] 715 / 0 AT3G62270 1067 / 0.0 HCO3- transporter family (.1) Potri.015G077600 [exp] 704 / 0 AT3G62270 1068 / 0.0 HCO3- transporter family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF00955 [flax] [poplar] HCO3_cotransp HCO3- transporter family
Representative CDS sequence Show only first row Show all	>Lus10008083 pacid=23169754 polypeptide=Lus10008083 locus=Lus10008083.g ID=Lus10008083.BGIv1.0 annot-version=v1.0 ATGGAGAGTGTCAGTAGTCCGTTCAAAGGAATACTGAACGATTTGCGAGGGAGAGCGGCATGCTACAAGGACGATTGGACGAGTGCAATCCGCGCCGGCG TCAGGATTCTGGCGCCGACGTGGTACATCTTCTTCGCATCGGCACTTCCCGTGATCGCGTTCGGCGAGCAATTGAATCGAGATACAGACGGCAGCCTGAG CACAGTGGAGACGCTGGCATCGACGGCGCTTGCCGGACTGATTCATTCTATTTTGGGAGGGCAGCCGCTGTTGATATTAGGTGTAGCTGAGCCGACTGTC ATAATGTATACGTATTTGTACAGTTTCAGCAAGGATAGGCCGGAGCTGGGCCGGAGTTTGTATCTAGCTTGGGCTGGATGGGTGTGTGTATGGACGGGGA TCATGCTGTGTGCGCTAGCCATTTTCAACGCCGGAAACATCATCAACAGATTCACCAGAGTTGCTGGGGAGATGTTTGGCATGTTGATCGCAGTTCTTTT CATTCAAGAGGCCATTAAGGGGTTGGTTAGTGAATTCAGTATCCCAGAAGCTGATGATCCAAAGTCCGAAGAGTTCCAGTTCCAATGGCTGTATGCAAAT GGCTTGCTTGCTGTTATTTTCGCACTCGGTGTACTCTGGACTTCTCTCAAGACAAGAGATGCTAGAGCTTGGAGATACGGCACAGGTGGATTTCGAAGTT TCCTAGCGGACTATGGTGTTCCCTTAATGGTTGTGTTATGGTCTGTGTTATCTTACGCGATACCACGTAAAGTTCCTCGTGGAGTTCCAAGGAGGCTGTT CATCCCACTTCTGTGGGATTCACAGTCATTGCAACACTGGACAGTGGTCAAGGATATGTTGAAGGTACCAGTAGGATACATCTTTGCTGCAATCGTACCA GCAGTTATGATAGCAGGATTGTACTTCTTTGATCACAGTGTAGCTTCACAGCTGGCACAGCAGCCAGAGTTCAATCTAAAAAAGCCTTCTGCTTACCACT ACGACGTGTTTCTGCTAGGAATCATAACTTTGATTAGTGGATTGCTAGGACTTCCTCCTTCAAACGGAGTCCTCCCGCAATCGCCTATGCACACTAAGAG CCTTGCAGTTCTTAAGAAGCAGTTGATCCGAAAGAAGATGGTGAAAGGTGCTAAGGAAGTCATCGACCGAAAAGGAAGCTCGTCTGAAATCTATGGGAAG ATGCAAGATGTGTTCATAGAGATGGACCGATCACCAGCAGAAACTGCAACGGCGCACAGAGAACTGGAGGACTTGAAGAAAGCAGTAATGAGAGACGATG ATGGAGGGGAGTCGAAAGGGAAGTTCGACCCGGAGAAATGCATCGACGCTCACCTCCCTGTGAGAGTTAACGAACAGAGACTAAGTAACTTGTTACAGTC GATCCTGGTGGGGATCTCAATGTGTGCTATACCGTTGATCAAAATGATGCCGACTTCAGTCCTGTGGGGTTACTTCGCCTACATGGCCATCGACAGCCTT CCAGGAAATCAGTTCTGGGAAAGACTGTTGATGCTCTTCGTCGCTCCCAGCCGTCGCCATAAGATTTTGGAAGGCTTCCACGCATCGTTCGTCGAGTTGG TGCCGTTTAAGGACATAGTGATATTCACTCTGATGCAATTCGTCTACTTCCTGATGTGCTTCGGAATTACGTGGATCCCAATAGCAGGAATACTCTTCCC TCTGCCTTTCTTCATCCTTATCCTCATCAGGCAACACCTCCTTCCCAAGTTCTTCCAGCCCTACCATCTCCAAGAACTCGACGCCGCGGAGTACGAAGAG ATCACCGGCGCACCAAAGAGGAGCATGGATTTGGATGCAGGAGAAGGAGAGCGCGAGGGACGCGACGACGACTTCTTCCATGCCGAGATACTGGACGAGA TGACGACACACAGAGGAGAGTTGAAGCATCGTTCTCGCAGCGTCAGGGATGAAAGGCCATTACAGGTGCACCCAGGAGCAGGGGAAGGGGATAGCGGTGA AAGACAAGTGTGA
AA sequence Show only first row Show all	>Lus10008083 pacid=23169754 polypeptide=Lus10008083 locus=Lus10008083.g ID=Lus10008083.BGIv1.0 annot-version=v1.0 MESVSSPFKGILNDLRGRAACYKDDWTSAIRAGVRILAPTWYIFFASALPVIAFGEQLNRDTDGSLSTVETLASTALAGLIHSILGGQPLLILGVAEPTV IMYTYLYSFSKDRPELGRSLYLAWAGWVCVWTGIMLCALAIFNAGNIINRFTRVAGEMFGMLIAVLFIQEAIKGLVSEFSIPEADDPKSEEFQFQWLYAN GLLAVIFALGVLWTSLKTRDARAWRYGTGGFRSFLADYGVPLMVVLWSVLSYAIPRKVPRGVPRRLFIPLLWDSQSLQHWTVVKDMLKVPVGYIFAAIVP AVMIAGLYFFDHSVASQLAQQPEFNLKKPSAYHYDVFLLGIITLISGLLGLPPSNGVLPQSPMHTKSLAVLKKQLIRKKMVKGAKEVIDRKGSSSEIYGK MQDVFIEMDRSPAETATAHRELEDLKKAVMRDDDGGESKGKFDPEKCIDAHLPVRVNEQRLSNLLQSILVGISMCAIPLIKMMPTSVLWGYFAYMAIDSL PGNQFWERLLMLFVAPSRRHKILEGFHASFVELVPFKDIVIFTLMQFVYFLMCFGITWIPIAGILFPLPFFILILIRQHLLPKFFQPYHLQELDAAEYEE ITGAPKRSMDLDAGEGEREGRDDDFFHAEILDEMTTHRGELKHRSRSVRDERPLQVHPGAGEGDSGERQV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15460		ATBOR4	ARABIDOPSIS THALIANA REQUIRES ...		Lus10008083 [exp]	0	1
AT3G11430		ATGPAT5, GPAT5	glycerol-3-phosphate acyltrans...		Lus10040277 [exp]	7.0	0.8921
AT2G39350		ABCG1	ATP-binding cassette G1, ABC-2...		Lus10040342 [exp]	10.4	0.8873
AT5G13580		ABCG6	ATP-binding cassette G6, ABC-2...		Lus10001972 [exp]	10.6	0.8910
AT2G18360			alpha/beta-Hydrolases superfam...		Lus10041747 [exp]	14.1	0.8776
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10042612 [exp]	19.7	0.8771
AT2G39350		ABCG1	ATP-binding cassette G1, ABC-2...		Lus10023465 [exp]	20.0	0.8752
AT5G09520		PELPK2	Pro-Glu-Leu|Ile|Val-Pro-Lys 2,...		Lus10034813 [exp]	20.8	0.8764
AT3G25640			Protein of unknown function, D...		Lus10019166 [exp]	23.1	0.8472
AT5G13580		ABCG6	ATP-binding cassette G6, ABC-2...		Lus10030306 [exp]	25.8	0.8745
AT1G28490		OSM1, ATSYP61, ...	syntaxin of plants 61 (.1.2)		Lus10039880 [exp]	26.5	0.8769

Compare expression of checked genes

Lus10008083 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.