Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G29000 254 / 3e-80 GARP PHL1 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) AT4G28610 234 / 1e-72 GARP ATPHR1, PHR1 phosphate starvation response 1 (.1) AT3G04450 233 / 9e-72 GARP Homeodomain-like superfamily protein (.1.2) AT2G01060 159 / 3e-45 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT2G20400 161 / 6e-45 GARP myb-like HTH transcriptional regulator family protein (.1) AT3G13040 159 / 1e-43 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT5G06800 149 / 1e-40 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT5G18240 136 / 7e-36 GARP MYR1, ATMYR1 ARABIDOPSIS MYB-RELATED PROTEIN 1, myb-related protein 1 (.1.2.3.4.5) AT3G04030 136 / 1e-35 GARP Homeodomain-like superfamily protein (.1.2.3) AT4G13640 132 / 3e-35 GARP UNE16 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027958 [exp] 502 / 6e-178 AT5G29000 132 / 7e-35 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Lus10029607 [exp] 358 / 9e-120 AT5G29000 279 / 2e-89 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Lus10032778 [exp] 324 / 4e-107 AT5G29000 272 / 2e-87 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Lus10022886 [exp] 266 / 2e-84 AT4G28610 310 / 7e-102 phosphate starvation response 1 (.1) Lus10024938 [exp] 262 / 9e-83 AT4G28610 314 / 2e-103 phosphate starvation response 1 (.1) Lus10022885 [exp] 260 / 5e-82 AT4G28610 299 / 2e-97 phosphate starvation response 1 (.1) Lus10035705 [exp] 167 / 2e-46 AT3G13040 372 / 4e-125 myb-like HTH transcriptional regulator family protein (.1.2) Lus10037296 [exp] 166 / 3e-46 AT3G13040 364 / 5e-122 myb-like HTH transcriptional regulator family protein (.1.2) Lus10039124 [exp] 151 / 3e-42 AT2G01060 350 / 6e-122 myb-like HTH transcriptional regulator family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G048000 [exp] 380 / 1e-128 AT5G29000 321 / 4e-106 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Potri.019G020900 [exp] 350 / 1e-117 AT5G29000 306 / 4e-101 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Potri.002G257800 [exp] 308 / 5e-100 AT4G28610 332 / 6e-110 phosphate starvation response 1 (.1) Potri.007G003200 [exp] 174 / 5e-49 AT3G13040 330 / 1e-108 myb-like HTH transcriptional regulator family protein (.1.2) Potri.014G000700 [exp] 168 / 2e-47 AT3G13040 308 / 6e-101 myb-like HTH transcriptional regulator family protein (.1.2) Potri.016G047900 [exp] 163 / 6e-46 AT5G06800 233 / 3e-73 myb-like HTH transcriptional regulator family protein (.1.2) Potri.006G000800 [exp] 159 / 5e-45 AT2G01060 321 / 1e-109 myb-like HTH transcriptional regulator family protein (.1.2) Potri.006G191000 [exp] 158 / 1e-43 AT5G06800 252 / 2e-80 myb-like HTH transcriptional regulator family protein (.1.2) Potri.016G001100 [exp] 155 / 2e-43 AT2G01060 318 / 5e-109 myb-like HTH transcriptional regulator family protein (.1.2) Potri.001G314800 [exp] 136 / 1e-36 AT4G13640 345 / 2e-119 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10008197 pacid=23173769 polypeptide=Lus10008197 locus=Lus10008197.g ID=Lus10008197.BGIv1.0 annot-version=v1.0 ATGTCATCATCGTTCCCTGTTCTTCGTGCTCCTGCTGGAGAGAAGTACCCCAAATTGCCAGACACTTGCCAGTTTTCTGCTGAGCGGGAGATAATGAGAA ACTCTGTACCTCAACAAGCAGTTCCAGTGGGGTCTGGCAGCGGGGCAGTTGGGCCAATTTTATCTTCGTCTTCTGGATTCGTGAATGAAATGCATGTCAC TTCAGTTTCACCGCAGGGAAAACATTCTCGGAACTCTCCATTTATTTCTGAATCATCAAGTGCGAGAGGAAGTTTGCCGCCATTGCTTTCTTCTTCCCAT GCAGAAGTACATTCCTCATCATTGGTTAGTCACTCCACAGAGAGTAAGAATATCGGTTGGTCCACCGATTCACTTCCTGGCTTCCTTGATGATTTTCCGG AAAATGTCTCCATCCAGAATGGTCAGGAGGAAAGTACAGGGGTCATTGCGTCGGAGGAACATGTGAAGAGACTTGACTGGCAGTGGGCGGATCAATGGAT TTCAGTTGATGATACTCTGGATACAGACTGGAATGAAATTCTTAGTGAAGTTAATGCCACAGAGTCCAAACAAAAGGAACACATAACCAAGCAGATGCCA GTGCCACAAACAAGTTCAAGTAACTCGGTACCGGAAACTTCAGCACAACCTGCTCAAGCTGCACATAGTGGAGAAGTGATATCGGTTGCCACTCCACTGT CCTCTGTAACTTCAATAAAATCCAGGATGAGATGGACACCGGAACTTCATGAAGCTTTTGTGGAAGCAGTCAATCAGCTTGGTGGCAGTGAACGAGCTAC TCCGAAGGGTGTCCTGAAGCTAATGAATATTGAAGGCTTGACTATTTATCATGTCAAAAGCCACTTGCAGAAGTACAGGACAGCCAGATACAAACCAGAG CCATCTGAAGAATCTTCAGAGAAAAAGTTGACTTCTATTGACGACATGAAATCTCTCGACTTGAAAACGAGCATGGGAATAACCGACGCTTTAAGAATGC AAATGGAAGTTCAGAAACAACTACATGAACAACTTGAGATTCAGCGAAACTTACAGCTGAGAATAGAGGAACAAGGGAGGTATCTACAGAAGATGTTTGA GAAGCAAAAGAAGATGGAAGAGGAAAGAACCAAGCGTCCTTCCTCATCTCCCATTGATGATCCAAAGTCGAGCGATAAATTAGAAGCCACAGGTATAGAT GGAACGAAAAGTCAAGCAAACGAGACGAGCAATGCAGATAGAAACAACAAGGATACTAGTCTCGACGATCTCGAGTCAAGTCCAACTCAGGCGAAACGAC CAAGGACAGATCAAACATCGCCGAGAGCAGTATAG
AA sequence Show only first row Show all	>Lus10008197 pacid=23173769 polypeptide=Lus10008197 locus=Lus10008197.g ID=Lus10008197.BGIv1.0 annot-version=v1.0 MSSSFPVLRAPAGEKYPKLPDTCQFSAEREIMRNSVPQQAVPVGSGSGAVGPILSSSSGFVNEMHVTSVSPQGKHSRNSPFISESSSARGSLPPLLSSSH AEVHSSSLVSHSTESKNIGWSTDSLPGFLDDFPENVSIQNGQEESTGVIASEEHVKRLDWQWADQWISVDDTLDTDWNEILSEVNATESKQKEHITKQMP VPQTSSSNSVPETSAQPAQAAHSGEVISVATPLSSVTSIKSRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMNIEGLTIYHVKSHLQKYRTARYKPE PSEESSEKKLTSIDDMKSLDLKTSMGITDALRMQMEVQKQLHEQLEIQRNLQLRIEEQGRYLQKMFEKQKKMEEERTKRPSSSPIDDPKSSDKLEATGID GTKSQANETSNADRNNKDTSLDDLESSPTQAKRPRTDQTSPRAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G29000	GARP	PHL1	PHR1-like 1, Homeodomain-like ...		Lus10008197 [exp]	0	1
AT5G55530			Calcium-dependent lipid-bindin...		Lus10016592 [exp]	6.0	0.9347
AT3G54480		SKP5, SKIP5	SKP1/ASK-interacting protein 5...		Lus10024168 [exp]	6.2	0.9389
AT5G48340			unknown protein		Lus10036410 [exp]	6.7	0.9284
AT2G02760		ATUBC2	ubiquitin-conjugating enzyme 2...		Lus10013263 [exp]	7.2	0.9385
AT5G23090	CCAAT	NF-YB13	"nuclear factor Y, subunit B13...		Lus10038952 [exp]	8.1	0.9403
AT5G45760			Transducin/WD40 repeat-like su...		Lus10029246 [exp]	8.8	0.9246
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Lus10026913 [exp]	8.8	0.9292
AT1G15740			Leucine-rich repeat family pro...		Lus10008036 [exp]	9.2	0.9396
AT2G14680		MEE13	maternal effect embryo arrest ...		Lus10010456 [exp]	9.4	0.9323
AT1G05410			Protein of unknown function (D...		Lus10041201 [exp]	9.5	0.9368

Compare expression of checked genes

Lus10008197 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.