Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28220 253 / 2e-81 ATPUP3 purine permease 3 (.1) AT1G28230 233 / 2e-73 ATPUP1, PUP1 purine permease 1 (.1) AT2G33750 222 / 2e-69 ATPUP2 purine permease 2 (.1.2) AT4G18220 145 / 5e-40 Drug/metabolite transporter superfamily protein (.1) AT1G30840 138 / 5e-37 ATPUP4 purine permease 4 (.1.2) AT4G18210 132 / 1e-34 ATPUP10 purine permease 10 (.1) AT1G44750 129 / 9e-34 ATPUP11 purine permease 11 (.1.2.3) AT4G18195 117 / 4e-29 ATPUP8, AT4G18200 ARABIDOPSIS THALIANA PURINE PERMEASE 8, purine permease 8 (.1) AT4G18190 114 / 2e-28 ATPUP6 purine permease 6 (.1) AT4G08700 113 / 3e-28 ATPUP13 Drug/metabolite transporter superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020939 [exp] 475 / 2e-168 AT1G28220 286 / 9e-95 purine permease 3 (.1) Lus10008714 [exp] 466 / 6e-165 AT1G28220 286 / 7e-95 purine permease 3 (.1) Lus10008713 [exp] 464 / 9e-164 AT1G28220 288 / 2e-95 purine permease 3 (.1) Lus10020937 [exp] 407 / 4e-142 AT1G28220 258 / 3e-84 purine permease 3 (.1) Lus10036075 [exp] 353 / 1e-120 AT1G28220 273 / 5e-90 purine permease 3 (.1) Lus10026807 [exp] 351 / 6e-120 AT1G28220 273 / 7e-90 purine permease 3 (.1) Lus10020950 [exp] 284 / 3e-93 AT1G28220 448 / 3e-158 purine permease 3 (.1) Lus10015906 [exp] 256 / 5e-83 AT1G28220 406 / 2e-142 purine permease 3 (.1) Lus10036465 [exp] 239 / 1e-75 AT1G28220 394 / 1e-136 purine permease 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G099600 [exp] 344 / 4e-117 AT1G28220 229 / 2e-72 purine permease 3 (.1) Potri.005G160300 [exp] 267 / 8e-87 AT1G28220 413 / 8e-145 purine permease 3 (.1) Potri.014G043900 [exp] 154 / 6e-43 AT1G44750 434 / 2e-152 purine permease 11 (.1.2.3) Potri.001G147600 [exp] 148 / 1e-40 AT4G18210 315 / 7e-105 purine permease 10 (.1) Potri.001G352100 [exp] 146 / 5e-40 AT4G18210 398 / 1e-137 purine permease 10 (.1) Potri.006G184900 [exp] 140 / 5e-38 AT2G24220 404 / 6e-141 purine permease 5 (.1.2) Potri.001G352200 [exp] 134 / 1e-35 AT4G18220 315 / 1e-105 Drug/metabolite transporter superfamily protein (.1) Potri.003G156900 [exp] 129 / 2e-33 AT1G30840 323 / 4e-108 purine permease 4 (.1.2) Potri.001G074100 [exp] 105 / 3e-25 AT1G30840 303 / 5e-101 purine permease 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10008212 pacid=23164900 polypeptide=Lus10008212 locus=Lus10008212.g ID=Lus10008212.BGIv1.0 annot-version=v1.0 ATGGACGTGGAGAGGGTGGTGGTTACTGTGAAGAACACCACCAATATTCAACCCATCAGAAATCAGAATCACCACCATATGAAAACATTCCTCCTACTTT TCAACTGCTTCATCCTGACCGTCGGTCAAGTCGCGGGCCCACTCCTCTGCAGGATGTACTTCATCCACGGTGGCAAAAAGCTATGGCTCTCAACTTGGGC CAACACCGCCGGCTTCCCAATCCTCCTCATCCCAATCGCCATCTCCTACTACAAAAATAAAGCCGCCGCCAAATCCGCAACCCCCCCGAAACACGGCGTC GCCACCGCCGCTGTCTTCTTCATCCAATCAAAACGGCTGGTCGGAGCAAGCATGCTTTTGGGGATCCTCCTCGGTTTCGACTGCTACCTCTACTCTTTCG GGACCGCTTACCTCCCCGTCTCCGTCATTTCCTTAGTCAGCTCCTCACAGCTGGCGTTCACCGCAATCCTCGCCTACTTCATCGTGAGGCAGAAGTTCAC TCACTACTCGGTAAACGCCGTCGTTTTGATGACGTTCGGGTCGGTTATCCTCGGACTTCACATGGACCAGGATGTCCCCGACGGAGAGTCTCGGCAGAAG TATGTGTTGGGTTTTGTTGTGACGACGGCGGCGGCTGCCGGTCATGGTTTGTTTCTGACGTTGATTGAGTATGCTCGTATTAAAGCTGGGATTCCTATTA CGTTCGATCTCCTCATGCAGCTTCAGTTCGTTATGTCGTTGTTCGCCACCTTGTTTTCTACCATCCCCATGATCATTAACAACGATTTCCAGAGTATGGG AGAGGAGGCGGCGGAATTCGAGATAGGGCAGAGGAATTACTACGTGATAATAGTGGTGGGAGCAATAGCGTTGCAGCTGATGATAGTAGGGGTGTTCGGA GTGGTGTTCAGCTCGTCTTCTCTGTTCGGAGGAATAATGACAGCTCTACTCGTACCTCTTCAGCAAGTTTTTGCTATCATCTTTCTCAACGAAGGATTCA ATGCCGAGAAAGGGATGGCTCTCGCATTGTGCCTTTGGGGTTTTGCCTCCCATGTGTACGGTGGATACAAGACGACGACGGCATCGGAGGGACTACCACC GTCAGATCATCATCCTGCCGATGATATTATTAATAAGGACGACAACAACCATCAGGTCGTTTAG
AA sequence Show only first row Show all	>Lus10008212 pacid=23164900 polypeptide=Lus10008212 locus=Lus10008212.g ID=Lus10008212.BGIv1.0 annot-version=v1.0 MDVERVVVTVKNTTNIQPIRNQNHHHMKTFLLLFNCFILTVGQVAGPLLCRMYFIHGGKKLWLSTWANTAGFPILLIPIAISYYKNKAAAKSATPPKHGV ATAAVFFIQSKRLVGASMLLGILLGFDCYLYSFGTAYLPVSVISLVSSSQLAFTAILAYFIVRQKFTHYSVNAVVLMTFGSVILGLHMDQDVPDGESRQK YVLGFVVTTAAAAGHGLFLTLIEYARIKAGIPITFDLLMQLQFVMSLFATLFSTIPMIINNDFQSMGEEAAEFEIGQRNYYVIIVVGAIALQLMIVGVFG VVFSSSSLFGGIMTALLVPLQQVFAIIFLNEGFNAEKGMALALCLWGFASHVYGGYKTTTASEGLPPSDHHPADDIINKDDNNHQVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10008212 [exp]	0	1
AT1G79860		ATROPGEF12, ROP...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10037866 [exp]	7.3	0.9222
AT1G71140			MATE efflux family protein (.1...		Lus10008911 [exp]	8.0	0.8512
AT1G17810		BETA-TIP	beta-tonoplast intrinsic prote...		Lus10040652 [exp]	9.5	0.9023
AT4G16563			Eukaryotic aspartyl protease f...		Lus10007466 [exp]	9.7	0.9016
AT4G35220			Cyclase family protein (.1)		Lus10027872 [exp]	10.6	0.9170
AT2G29040			Exostosin family protein (.1)		Lus10016532 [exp]	12.1	0.9007
					Lus10025268 [exp]	13.0	0.9168
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10015076 [exp]	13.0	0.7832
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Lus10026946 [exp]	13.6	0.8593
AT1G54140		TAF9, TAFII21	TBP-ASSOCIATED FACTOR 9, TATA ...		Lus10001863 [exp]	14.6	0.8153

Compare expression of checked genes

Lus10008212 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.