Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72360 142 / 9e-41 AP2_ERF AtERF73, HRE1 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3) AT2G47520 137 / 5e-40 AP2_ERF AtERF71, ERF71, HRE2 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 2, Arabidopsis thaliana ethylene response factor 71, Integrase-type DNA-binding superfamily protein (.1) AT3G16770 138 / 1e-39 AP2_ERF RAP2.03, ATEBP, RAP2.3 ,ERF72 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) AT2G33710 108 / 2e-28 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2) AT5G13330 104 / 4e-27 AP2_ERF RAP2.6L related to AP2 6l (.1) AT3G14230 107 / 1e-26 AP2_ERF RAP2.2 related to AP2 2 (.1.2.3) AT5G61890 102 / 5e-26 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G53910 103 / 2e-25 AP2_ERF RAP2.12 related to AP2 12 (.1.2.3) AT5G51190 97 / 4e-24 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G22200 98 / 5e-24 AP2_ERF Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003601 [exp] 465 / 2e-167 AT1G72360 144 / 2e-41 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10037448 [exp] 127 / 4e-34 AT1G53910 244 / 4e-78 related to AP2 12 (.1.2.3) Lus10016827 [exp] 125 / 4e-34 AT3G16770 183 / 4e-57 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Lus10037487 [exp] 122 / 1e-33 AT3G16770 156 / 2e-47 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Lus10013186 [exp] 124 / 8e-33 AT1G53910 254 / 7e-82 related to AP2 12 (.1.2.3) Lus10014054 [exp] 108 / 5e-28 AT4G34410 139 / 4e-40 redox responsive transcription factor 1 (.1) Lus10011830 [exp] 95 / 5e-24 AT3G23230 134 / 4e-41 Integrase-type DNA-binding superfamily protein (.1) Lus10042907 [exp] 95 / 5e-23 AT2G44840 135 / 5e-39 ethylene-responsive element binding factor 13 (.1) Lus10033664 [exp] 94 / 6e-23 AT3G15210 119 / 2e-33 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G201600 [exp] 184 / 1e-56 AT3G16770 123 / 2e-33 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Potri.014G126100 [exp] 184 / 1e-56 AT3G16770 122 / 3e-33 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Potri.008G210900 [exp] 136 / 9e-39 AT3G16770 146 / 5e-43 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Potri.010G006800 [exp] 132 / 4e-37 AT3G16770 130 / 5e-37 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Potri.001G163700 [exp] 134 / 1e-36 AT1G53910 223 / 9e-70 related to AP2 12 (.1.2.3) Potri.003G071700 [exp] 133 / 2e-36 AT1G53910 223 / 7e-70 related to AP2 12 (.1.2.3) Potri.003G162500 [exp] 108 / 2e-28 AT5G13330 142 / 5e-42 related to AP2 6l (.1) Potri.001G067600 [exp] 108 / 2e-28 AT5G13330 130 / 1e-37 related to AP2 6l (.1) Potri.009G101900 [exp] 107 / 1e-27 AT4G34410 119 / 2e-32 redox responsive transcription factor 1 (.1) Potri.004G141200 [exp] 104 / 2e-26 AT4G34410 130 / 2e-36 redox responsive transcription factor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10008214 pacid=23164927 polypeptide=Lus10008214 locus=Lus10008214.g ID=Lus10008214.BGIv1.0 annot-version=v1.0 ATGTGTGGCGGAGCCATTATCGCCGATTTCATTCCTCGCAACCGCAACCGCAACTTAACCGCTGCCGACCTATGGCCGGAGTCCTTTTTCAGCAAAGCCA GCCCCTTTGATACTCACGATCAGCCAGCCTCATTCCCTGCCAAAAGATCCCACCACACCTCTTCAGGTGGTGCGGAATCAGATAATAACAAAGGTGAACC AGTCAAAAAGCAGAGGAAGAACTTGTACAGGGGAATCAGGCAGCGTCCATGGGGGAAATGGGCTGCGGAGATTCGCGACCCGCGGAAAGGCGTTCGGGTT TGGCTAGGCACCTTCAACTCCGCCGAGGAAGCAGCTCGCGCTTACGACAAAGAAGCACTCAAAATCCGCGGCAAGAAAGCTAAAGTCAATTTCCCCAATG AAGAATCGATCAATCACTCGAACATTCACCCTCCGTTTCAGATCTTGCAGTCCAATAACCAGCACGATCCGATCATTCTGGATAGCTACCCGGAGAGCTG TAATTTCGGGTTCGACCTCAACCAGATAGAGGACTACCCTTCTTCCACTGGTTGGAACAACAACAATGGCGGTTACGCTGCTGGTGAATTCCTTGGTGTC AAAGAAGAAGAAGAGGAGGAAGTAGTGCTGGAGAATAAGATCCATAGCTCCGAAGAGTCGGAGCAGACATCGGAGGTGCAGAAATTGTCGGAGGAGCTGA TGGCGTATGAGAATTACATGAAGTTTTATCAGATTCCGTATATGGAAGGGGAATCGGTGAGCCGTCAGAGCGCCGCCCAGGAGAGCGTTGTGGGAGATCT CTGGAACTTCGACGACGATGTTGATTCCCTCTAA
AA sequence Show only first row Show all	>Lus10008214 pacid=23164927 polypeptide=Lus10008214 locus=Lus10008214.g ID=Lus10008214.BGIv1.0 annot-version=v1.0 MCGGAIIADFIPRNRNRNLTAADLWPESFFSKASPFDTHDQPASFPAKRSHHTSSGGAESDNNKGEPVKKQRKNLYRGIRQRPWGKWAAEIRDPRKGVRV WLGTFNSAEEAARAYDKEALKIRGKKAKVNFPNEESINHSNIHPPFQILQSNNQHDPIILDSYPESCNFGFDLNQIEDYPSSTGWNNNNGGYAAGEFLGV KEEEEEEVVLENKIHSSEESEQTSEVQKLSEELMAYENYMKFYQIPYMEGESVSRQSAAQESVVGDLWNFDDDVDSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72360	AP2_ERF	AtERF73, HRE1	HYPOXIA RESPONSIVE ERF \(ETHYL...		Lus10008214 [exp]	0	1
AT1G72360	AP2_ERF	AtERF73, HRE1	HYPOXIA RESPONSIVE ERF \(ETHYL...		Lus10003601 [exp]	1.0	0.9948
					Lus10018421 [exp]	1.4	0.9906
					Lus10002596 [exp]	2.4	0.9903
AT1G76600			unknown protein		Lus10033761 [exp]	2.6	0.9840
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Lus10027598 [exp]	4.0	0.9884
AT3G50390			Transducin/WD40 repeat-like su...		Lus10016779 [exp]	5.0	0.9868
AT4G26270		PFK3	phosphofructokinase 3 (.1)		Lus10043044 [exp]	5.3	0.9793
AT5G59350			unknown protein		Lus10004955 [exp]	5.7	0.9810
AT1G71695			Peroxidase superfamily protein...		Lus10028689 [exp]	6.0	0.9856
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10015028 [exp]	6.0	0.9805

Compare expression of checked genes

Lus10008214 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.