Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12010 383 / 9e-114 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G16890 324 / 2e-92 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G17680 322 / 9e-92 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G18360 309 / 2e-89 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G69550 315 / 6e-89 disease resistance protein (TIR-NBS-LRR class) (.1) AT5G51630 311 / 2e-88 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT5G11250 310 / 6e-88 Disease resistance protein (TIR-NBS-LRR class) (.1) AT4G11170 306 / 3e-87 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G45250 301 / 1e-84 RPS4 RESISTANT TO P. SYRINGAE 4, Disease resistance protein (TIR-NBS-LRR class) family (.1) AT2G14080 300 / 1e-84 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023051 [exp] 1234 / 0 AT4G12010 415 / 2e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10028058 [exp] 1160 / 0 AT4G12010 367 / 3e-108 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10028060 [exp] 1129 / 0 AT4G12010 363 / 1e-106 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10008320 [exp] 1123 / 0 AT4G12010 402 / 1e-120 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10008222 [exp] 1011 / 0 AT4G12010 327 / 4e-96 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10015648 [exp] 830 / 0 AT4G12010 420 / 1e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10018021 [exp] 827 / 0 AT4G12010 434 / 5e-131 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10015350 [exp] 783 / 0 AT4G12010 422 / 2e-127 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10016029 [exp] 783 / 0 AT4G12010 451 / 2e-138 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G068200 [exp] 499 / 2e-157 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068300 [exp] 470 / 9e-147 AT5G17680 580 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G010800 [exp] 453 / 2e-139 AT5G17680 592 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070700 [exp] 437 / 4e-133 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069500 [exp] 429 / 8e-129 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G113701 [exp] 423 / 1e-127 AT5G17680 596 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G097100 [exp] 419 / 4e-127 AT4G12010 521 / 8e-165 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G070393 [exp] 409 / 4e-121 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G098900 [exp] 397 / 1e-119 AT5G17680 477 / 6e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G097800 [exp] 396 / 2e-118 AT5G17680 512 / 3e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10008221 pacid=23164910 polypeptide=Lus10008221 locus=Lus10008221.g ID=Lus10008221.BGIv1.0 annot-version=v1.0 ATGTCTTCCCCGTCTCCCTCTCCGCGGCCGTACACCGGCGAATGGGAATACGACGTTTTCCTGTGTTTCAGAGGCGACACGAGGAACAACTTCATGAGCC ACCTTGAACAGGCTATGCGGGCCAAGAAAATCAGAGTATTCGTGGACACCATGCTCGAGGTGACGCAAGACATCGGCGAGTTGCTCCGAATCCTCGAAAG GACGGCGGTCTCGGTGGTGATTTTCTCCAGCAAGTTTGCCGATTCCAGTTGGTGCTTGGATGAAGTGTACACTATTGCCCAAAGCGTTGCGAATTTGGGA CACCGGGCGATCCCCGTCTTCTACAACGTTGACTGGACCACCGTGGCCGGAGACTATCATTGGTTTGATGATTTCAAATCAGTCTTCCTCTCTTGCTTCC GTACTTGCTTTTTTCCTCAGCCAACACTTTATGCTAAGACTATCGCTGGACTGGATGACACCCAAACGAGGAAAGATGAATGGATGGGATCTTTGAAGTC TGTTGCTTTGATGTCTGACTGCAGCAATGTTACATTTCCGGTGGAAGCAGAATTGGTTGAGCAGGTTGTAGCAAAGGTTCTGACCGCTCTAGCATCCATG TCATCAGGCATCGAGTTCAACAATTTGGTCGGCATGGATTCGCGTGTTTCTGATGTCGAGCAGCTCTTAGCCATGGACGAGCACGATACCATTCGCATCG TCGGACTTTGGGGAATGGGAGGTCTAGGCAAATCAACTCTGGCTAGAAACTGCTACGAAAGATTGAAAAGACTCAACAAAGAAGAAATGAGGTTTCATTT CATTGACAAGATCAACGAATCCTCCGTTAGTGATCGAAAATCGGTTGAAGGATTAGTACAACAACTTTATTCGACATTGTTGTCGGAGAGGCATCTTACT CGTGGAGATGTTAATGTCGGTTACAGAAGGGCACGGCTCTGTCGTTCCAAGGTATTCGTGGTCCTCGACGACGTGCAAACTCCTTCACAGTTGGAACATT TACTTTTAGGAGAGGCCCTCAGTCTCGTGAAACTCTTTGCTATCGGGAGCAGGATAATCCTTACTACTAGAAATCAAACGGTGCTTGAATATGTAAAGGC AGAGATGTACTCTGTTGAGCATCTTAATGACGACGAGTCTCTGCAACTATTCAAAATGCACGCCTTCAAACCAGACTACCACTCGATCTCTGACGACTGG AATGTTCTGTCGCGTGACGTAATTTCGTACTGCAAGGGGAACCCCTTGGCCCTGAAAGTTTTAGGAGGTACATTGTTATACCAGGAGAGAACATATTGGA AAAGTTTCCTGCGAAAGTTGAGCGAGATTCAAGAGCCGGAAATTCATCATGTTCTCAAGCGAAGCTATGGCGAGCTCGAACCGGATGATAGGAGATTGTT CCTCGACATTGCTTGTTCGTTTTACGGGATTGTAAAGTGTTTACTCGTAAAATACATGGAAACTAGTTACACATCTGCTTACAGTGGAGTCGAGGATCTC ATCAACAAGTCTCTAGTAATATGTACTACTGACAAGTACCAAGGTGAGGTGCTAAGAGTACATGGCTTGTTGAGGGAGATGGCATGGAATATTGTTAACG AGGAAGAAGATGTTGGGAAACGCAGCCGTTTAAAGGATCCTCATGAGATTCACAACTTGTTGACTATTCGAGAGGGAGACAGAGCAACCCAATGTATAAA TTTGGACCTTTCCAAAGCTGAAGATATGCATTTGAATTCCAATACTTTCAGAGGCATGGACTCTCTTAGATGGCTGGATTTCGCCTGGCCAAAATGTGTT GGCAATGGGAATCCCAAAATCCAACTATCAGATGGTGATCTCAACTCTCTTCCCGACGAGTTAAGGGGATTGTATTGGGATAATTTCCCTTCTACTTCTC TGCCCGCGGCTTTCTCACCCGAAAAACTAGCGTACTTAGTTATAGGTCATAGTCCGATTGAGCAATGCTGGGAGCAAGATCAGCCAGAGCTTGAGTACCT AGTGCTGCTCAGCCTCTCCAACTGTGAGAAACTAACCATTGTCCCAGACCTGACAAGTTGTTCAAATCTTGAACACCTACTACTCAGTGGCTGCAAAACC CTGATTGAGATACCCGAAATCATTCATTCTCTCGTAAGGTTAGTAAGGCTTGACGCTAGAGACTGTCCGAATCTAAAGAATGTTCCGTCAAGGCTACAGT CCAAGTTCCTCAAGCAACTTCTACTCTCCAATTGCCCCAGTCTTACCCAATGTCCAGAGGTTGTTGATTCCACAGAATTCCTTGCTCTTGATTTAGATGG TACGCCCATTGCTTCCTTGCCCGACAACTCAATCTCCAAGGTGAAACAGGATGGCATGGTCAGTCTCTCCGGCCCAAACGTCACACATTTCCCCCGAGTT TCGGCCAGATTAGAGCTCATTCGTTTGCGCCAAACTGCTATTGCTAATATTGATGAATTGGATGATAACAACAACGGTGAGTCCTCAAAATCGGATCGAA TGCATTTGATCCAAAATGCCGAGCTCAAGACTTTGCCCACGAGTATCTGGAATATGGCCTCTGCTGAACTTATTGTACAGGATTGTCCGTTGATCGAATG TTTACCAGTGGTATTAGAGCCTTATTCGTATTCCTTAACTAAGCTCCGCATTGCTGGATGTCCAAAGGTCACCGAGTTTCCGACTTGCATATGCAAGCTG AAGTTTTTGGAGGTTCTGGTTTTCGTTGCCACGGGTATTCAGTCTTTGCCTTCTTGTATTGGAGAATTGGAGCACTTGTCTTATCTTGATCTCTCGTACA ATGCAATCCTGGAATCGATACCTAGTACCATTCATGGACTTGCTAAGCTGTTTGAGCTATTGTTGATTGGGTGTGGGAGTATTGAGTCTTTGCCTGAGAT GCTCCCACCTAATCTAAACGTCTTAAAGGCGAATAATTGTGGGTCGTTGCGAGCTTTGTCGAAAAATGTTGGTGATCTGAGTTTCCAACACTTGAGACTT GATGATTGTCCGAAACTGGATAGGAATTTTCTTGATGAGATTGTCGTCAGTTTCCCAGATCAGGCTTTGTCTCGACACTCACATGTCGGTTTTCACTACT CGGGAAGTGAAGTTCCAGAATGGTTTGTCCATCGAAGCATAGAAGAAGAGAACTACGTTACGATAGAGCTGCCGATAGACTACTCTGCGGGCAAACCAAA GGGAGTTGCATTCGGGGTCGTGTATTCTTTGGACCAACCATGTGGTTCCATGCACATAGTTGGCGGTTGCTTCCTCGGGGAGGAGAATAATGTCTTGTGG CGTTGGACATCTTTAACTTGGGAGTACCATGTCCTTGACAGCTCGGACCGTGTCTTTCTCTGGTCTGACAATACGTTTTACGATTTCGAAGATGAAGAAC AAATTTGGTACAATAAGTACGCAGGAAGGACCGTGTTATTCCGTTTTTTCGCGGTTGTAAAATTTGGAGGTGTGGTCACTCCCTTCCAAGTTAAAAAAGG TGGTGTCTCCCTACTTCACTGA
AA sequence Show only first row Show all	>Lus10008221 pacid=23164910 polypeptide=Lus10008221 locus=Lus10008221.g ID=Lus10008221.BGIv1.0 annot-version=v1.0 MSSPSPSPRPYTGEWEYDVFLCFRGDTRNNFMSHLEQAMRAKKIRVFVDTMLEVTQDIGELLRILERTAVSVVIFSSKFADSSWCLDEVYTIAQSVANLG HRAIPVFYNVDWTTVAGDYHWFDDFKSVFLSCFRTCFFPQPTLYAKTIAGLDDTQTRKDEWMGSLKSVALMSDCSNVTFPVEAELVEQVVAKVLTALASM SSGIEFNNLVGMDSRVSDVEQLLAMDEHDTIRIVGLWGMGGLGKSTLARNCYERLKRLNKEEMRFHFIDKINESSVSDRKSVEGLVQQLYSTLLSERHLT RGDVNVGYRRARLCRSKVFVVLDDVQTPSQLEHLLLGEALSLVKLFAIGSRIILTTRNQTVLEYVKAEMYSVEHLNDDESLQLFKMHAFKPDYHSISDDW NVLSRDVISYCKGNPLALKVLGGTLLYQERTYWKSFLRKLSEIQEPEIHHVLKRSYGELEPDDRRLFLDIACSFYGIVKCLLVKYMETSYTSAYSGVEDL INKSLVICTTDKYQGEVLRVHGLLREMAWNIVNEEEDVGKRSRLKDPHEIHNLLTIREGDRATQCINLDLSKAEDMHLNSNTFRGMDSLRWLDFAWPKCV GNGNPKIQLSDGDLNSLPDELRGLYWDNFPSTSLPAAFSPEKLAYLVIGHSPIEQCWEQDQPELEYLVLLSLSNCEKLTIVPDLTSCSNLEHLLLSGCKT LIEIPEIIHSLVRLVRLDARDCPNLKNVPSRLQSKFLKQLLLSNCPSLTQCPEVVDSTEFLALDLDGTPIASLPDNSISKVKQDGMVSLSGPNVTHFPRV SARLELIRLRQTAIANIDELDDNNNGESSKSDRMHLIQNAELKTLPTSIWNMASAELIVQDCPLIECLPVVLEPYSYSLTKLRIAGCPKVTEFPTCICKL KFLEVLVFVATGIQSLPSCIGELEHLSYLDLSYNAILESIPSTIHGLAKLFELLLIGCGSIESLPEMLPPNLNVLKANNCGSLRALSKNVGDLSFQHLRL DDCPKLDRNFLDEIVVSFPDQALSRHSHVGFHYSGSEVPEWFVHRSIEEENYVTIELPIDYSAGKPKGVAFGVVYSLDQPCGSMHIVGGCFLGEENNVLW RWTSLTWEYHVLDSSDRVFLWSDNTFYDFEDEEQIWYNKYAGRTVLFRFFAVVKFGGVVTPFQVKKGGVSLLH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12010			Disease resistance protein (TI...		Lus10008221 [exp]	0	1
AT1G29000			Heavy metal transport/detoxifi...		Lus10011893 [exp]	2.8	0.9528
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10034847 [exp]	4.0	0.9577
					Lus10014873 [exp]	6.7	0.9528
AT2G20080			unknown protein		Lus10034960 [exp]	6.9	0.9371
AT3G24570			Peroxisomal membrane 22 kDa (M...		Lus10011679 [exp]	9.2	0.9442
AT2G29150			NAD(P)-binding Rossmann-fold s...		Lus10010877 [exp]	12.3	0.9420
AT2G37050			Leucine-rich repeat protein ki...		Lus10004275 [exp]	12.6	0.9510
AT4G27290			S-locus lectin protein kinase ...		Lus10016871 [exp]	13.7	0.9434
AT1G52790			2-oxoglutarate (2OG) and Fe(II...		Lus10005774 [exp]	13.9	0.8807
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10016139 [exp]	15.9	0.9315

Compare expression of checked genes

Lus10008221 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.