Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12010 312 / 9e-91 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G18360 304 / 8e-90 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G11170 284 / 2e-81 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G16890 285 / 6e-81 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G41750 281 / 1e-80 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G41550 277 / 4e-79 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G40910 276 / 9e-79 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G51630 277 / 2e-78 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT5G17970 270 / 2e-78 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G49140 269 / 1e-76 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008221 [exp] 1010 / 0 AT4G12010 400 / 8e-120 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10028058 [exp] 880 / 0 AT4G12010 367 / 3e-108 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10028060 [exp] 867 / 0 AT4G12010 363 / 1e-106 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10008320 [exp] 851 / 0 AT4G12010 402 / 1e-120 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10023051 [exp] 792 / 0 AT4G12010 415 / 2e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10018021 [exp] 605 / 0 AT4G12010 434 / 5e-131 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10012246 [exp] 592 / 0 AT4G12010 396 / 9e-122 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10015648 [exp] 580 / 0 AT4G12010 420 / 1e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10006732 [exp] 561 / 0 AT4G11170 322 / 8e-97 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G010800 [exp] 381 / 4e-116 AT5G17680 592 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068200 [exp] 371 / 8e-113 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069500 [exp] 358 / 3e-106 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070700 [exp] 356 / 3e-106 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070300 [exp] 341 / 8e-104 AT5G17680 558 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G113701 [exp] 347 / 5e-103 AT5G17680 596 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068300 [exp] 339 / 3e-101 AT5G17680 580 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G098900 [exp] 325 / 7e-96 AT5G17680 477 / 6e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070393 [exp] 327 / 3e-95 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G098500 [exp] 313 / 8e-93 AT5G17680 496 / 4e-157 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10008222 pacid=23164921 polypeptide=Lus10008222 locus=Lus10008222.g ID=Lus10008222.BGIv1.0 annot-version=v1.0 ATGGCTTCCTCATCTTCAACTTCTTCTTCTTCCCCGGAACCGTACACCGGCGAATGGGAATACGACGTTTTCTTGTGTTTCAGAGGCGGCGACATAGGGA ACAGCTTCCTGAGCCACCTTAAGCAAGCTATGCTCGACAAGAAAATCAGAGTCTTGGTGGACACCATGCTTAAGGTGACGCAGGACGACATGGCCGAGCT TCTCCGAATCCTCGAAAGAACCGCTGTTTCCGTAGTGATTTTCTCCAGCCAGTTTGCAGATTCGATTCTGTGCTTAGACCAAGTTCACACCATTGCCCAA AGCGTCCAGAATTTGGGTCACAGGGCACTTCCGATCTTCTACGATGTTGATTGGACCACTGTTGCCGGAGACTACCATTGGTTTCATGATTTCAAATCAG CCCTCCTCTCTTGCTTCTGTACCTGCTTTCTCCCCCATCCTACACTTTACGCTAAAACTATCGCTGGACTGGAGGCAACGCCAAAGATGAAGCAAGAATG GATGAAATCTTTGAAAGCTGTGGCTTCAAAAACTGGGCGTACCTCTGAATCATTTCCGGTCGAAGCTCGGTTAATTGAAGAGGTTGTGGCAAAAATTCTG ACGACACTAGCAACTATGTCGTCAGGTATCCAGTTCGACAATTTGGTCGGTATCGATTTGCGTATTTCGGAGGTTGAGCGACTATTAACGATGGACGACC TTAATGCCATTCGTGTGGTTGGACTTTGGGGAATGGGTGGGTTAGGTAAATCAACTCTGGCTAGGACTTGCTACGAAAGACTGAAAACACTCCACAAGGA GGAAATGAAGTTTCATTTCGTTGAGAAAATCAACGAGACATGTAGTAGTAGAAGTGATAAATCATATCTTGTTGAAGGATTAGTGCAAGAAATGTATTCA ACGTTGTTGTCAGAGAGTTGTCTCACTTGGGACGATGTCACTGTTGATTACAGAAGGGCACGTCTTTCTCATTTGAGAGTGTTCGTGGTTCTCGACGATG TGCAAACTCCTTTGCAGATGGAACAGTTTTTTCTACGAAAAGCTTCGAACCTCTTGAAACTCTTTTCGAAAGGCAGCAGGATAATCATAACTAGTAGAAA TCGGAGGGTGCTTGATTATATGGCAGCAGAGATATACCCGGTTGAGCATCTGAATGATGTTGAATCTCTTAAACTCTTTAATCTGCATGCCTTCAGACCG GGGTCTGTCCAAGATGACCGAATCAATAATAAGATGTTACATGAAGTTATTACATACTGCAAAGGAAATCCTTTAGCACTGAAAGTTTTGGGAGGCAGAT TGTTGCCCAAGGGCAAAACGTACTGGGAAAGCTTCTTATGCAAGTTGGGGCAAACTCAAGAGCCAGGGATTCATTATGTTCTTAGGCGAAGCTACGATGA GCTGGGAGACGACGATAAGAGATTGTTCCTAGATATTGCTTGTTTCTTTTCTGGGTCTTTAAAGTCTTTACTTGTAAAATACGTGGAAACTAGTTATTCC TCTTCTTTAAGCAGCATTGAGGATCTAATGTGTAAGTCTCTACTAATCTCTACTGCTGACAAGACTCAAGGTGAGATAGTTGTAGCGCATAGCTTGCTGA GAGAAATGGCTTGGAATATTGTTAACGAGGAAGAAAATATTGGACAACGTACCAGGTTGAAGGATCCCAGCGAGATTCGCAAGTTGTTGACGATCCGAGA GGGAGATAGAGCAACCCAAGGTATACATTTGGACCTTTCCAGAGCTGAAAATATGTGTTTGAAAGCTAATGCTTTTAGTGGCATGGAATCTTTGAGATGG CTAGACCTCAGCTGGCCGAAACCTGATGGATATGGAAATCGCAAAATCGAATTCTCAGATGGTGACCTAAACTCTCTTCCCAACACATTAAGGGGCCTGC GATGGGATCAATTCCCTTCAACTTCTCTACCGGCAGGTTTCTCACCAAAAAAACTAGCCTACCTAGTTATAACCCGCAGTCCGATTGAGAAATGCTGGAA GCGAGATCAGCCTAAGCTTGAGCACCTGATGTTGCTTAATCTCTCCGATTGCGAAAACCTAACGACGATCCCAAACCTGTTCCACTGTTCGAATCTGGAA TACCTTCTACTCCGTGGATGCAAATCCCTGTTTGAGCTTCCTGAAACCATTCAGTCTCTGGTGAAGTTAGTAGCGCTGGACGCCAGAGATTGTGAAAAGC TAGAGAGCGTTCCGTCAAGGCTAAACTCCAAGTCCCTTAAGCAACTTCTGCTCTCCAATTGCCCGAATCTCACCCGCTGTCCGGAGGTAAATTCTGTCCA ATTGCAGGTTCTGGAATTAGACGCATACCATGAAGCTGATGGGCGGTCAAAGCATGAAAAGAATCCACTTGGTAGCTCTACTTCTTCTGCTGCTGTTGTG GGGTGGAAGAATTTGGGTTGGTGGAGTAGCAGATCTTATGTGCCAAAGAAGTGGGTTTACAAGTTCAAAGCACACTTGAAAAAGGCAATTAGATGGAAGA TGAGCAGCCCTTGTGTTAAGTATAGTTATGATATACAGAGCTATTCTCTCAACTTCGACGATGGTGGATGCAGAGTGCAATGA
AA sequence Show only first row Show all	>Lus10008222 pacid=23164921 polypeptide=Lus10008222 locus=Lus10008222.g ID=Lus10008222.BGIv1.0 annot-version=v1.0 MASSSSTSSSSPEPYTGEWEYDVFLCFRGGDIGNSFLSHLKQAMLDKKIRVLVDTMLKVTQDDMAELLRILERTAVSVVIFSSQFADSILCLDQVHTIAQ SVQNLGHRALPIFYDVDWTTVAGDYHWFHDFKSALLSCFCTCFLPHPTLYAKTIAGLEATPKMKQEWMKSLKAVASKTGRTSESFPVEARLIEEVVAKIL TTLATMSSGIQFDNLVGIDLRISEVERLLTMDDLNAIRVVGLWGMGGLGKSTLARTCYERLKTLHKEEMKFHFVEKINETCSSRSDKSYLVEGLVQEMYS TLLSESCLTWDDVTVDYRRARLSHLRVFVVLDDVQTPLQMEQFFLRKASNLLKLFSKGSRIIITSRNRRVLDYMAAEIYPVEHLNDVESLKLFNLHAFRP GSVQDDRINNKMLHEVITYCKGNPLALKVLGGRLLPKGKTYWESFLCKLGQTQEPGIHYVLRRSYDELGDDDKRLFLDIACFFSGSLKSLLVKYVETSYS SSLSSIEDLMCKSLLISTADKTQGEIVVAHSLLREMAWNIVNEEENIGQRTRLKDPSEIRKLLTIREGDRATQGIHLDLSRAENMCLKANAFSGMESLRW LDLSWPKPDGYGNRKIEFSDGDLNSLPNTLRGLRWDQFPSTSLPAGFSPKKLAYLVITRSPIEKCWKRDQPKLEHLMLLNLSDCENLTTIPNLFHCSNLE YLLLRGCKSLFELPETIQSLVKLVALDARDCEKLESVPSRLNSKSLKQLLLSNCPNLTRCPEVNSVQLQVLELDAYHEADGRSKHEKNPLGSSTSSAAVV GWKNLGWWSSRSYVPKKWVYKFKAHLKKAIRWKMSSPCVKYSYDIQSYSLNFDDGGCRVQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12010			Disease resistance protein (TI...		Lus10008222 [exp]	0	1
AT3G51820		PDE325, ATG4, G...	PIGMENT DEFECTIVE 325, UbiA pr...		Lus10002850 [exp]	12.0	0.7246
AT5G55100			SWAP (Suppressor-of-White-APri...		Lus10043105 [exp]	12.8	0.8165
AT5G18940			Mo25 family protein (.1.2)		Lus10034014 [exp]	13.4	0.7885
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10018937 [exp]	14.9	0.8372
AT2G34930			disease resistance family prot...		Lus10002755 [exp]	20.4	0.8322
AT1G11400		PYM	partner of Y14-MAGO (.1.2.3)		Lus10007180 [exp]	25.7	0.8052
AT3G08840			D-alanine--D-alanine ligase fa...		Lus10012211 [exp]	26.0	0.8249
AT1G71010		FAB1C	FORMS APLOID AND BINUCLEATE CE...		Lus10016702 [exp]	26.7	0.7888
AT5G50430		UBC33	ubiquitin-conjugating enzyme 3...		Lus10037459 [exp]	31.6	0.8022
AT2G17020			F-box/RNI-like superfamily pro...		Lus10022652 [exp]	37.7	0.7834

Compare expression of checked genes

Lus10008222 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.