Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71680 565 / 0 Transmembrane amino acid transporter family protein (.1) AT1G24400 523 / 0 ATLHT2, AATL2, LHT2 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) AT5G40780 515 / 1e-180 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G67640 511 / 3e-179 Transmembrane amino acid transporter family protein (.1) AT1G48640 479 / 2e-166 Transmembrane amino acid transporter family protein (.1) AT1G61270 450 / 8e-155 Transmembrane amino acid transporter family protein (.1) AT3G01760 442 / 7e-152 Transmembrane amino acid transporter family protein (.1) AT1G25530 441 / 2e-151 Transmembrane amino acid transporter family protein (.1) AT1G47670 242 / 2e-73 Transmembrane amino acid transporter family protein (.1) AT4G35180 182 / 3e-51 LHT7 LYS/HIS transporter 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022329 [exp] 499 / 5e-174 AT5G40780 798 / 0.0 lysine histidine transporter 1 (.1.2) Lus10041581 [exp] 498 / 1e-173 AT5G40780 798 / 0.0 lysine histidine transporter 1 (.1.2) Lus10014606 [exp] 496 / 7e-173 AT5G40780 746 / 0.0 lysine histidine transporter 1 (.1.2) Lus10014605 [exp] 489 / 2e-170 AT5G40780 744 / 0.0 lysine histidine transporter 1 (.1.2) Lus10041580 [exp] 446 / 2e-153 AT5G40780 652 / 0.0 lysine histidine transporter 1 (.1.2) Lus10041482 [exp] 445 / 5e-153 AT1G25530 666 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10032074 [exp] 394 / 1e-133 AT5G40780 535 / 0.0 lysine histidine transporter 1 (.1.2) Lus10034283 [exp] 384 / 2e-130 AT1G25530 542 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10032073 [exp] 269 / 2e-85 AT5G40780 451 / 8e-158 lysine histidine transporter 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G091600 [exp] 519 / 0 AT5G40780 610 / 0.0 lysine histidine transporter 1 (.1.2) Potri.008G179000 [exp] 518 / 0 AT1G24400 654 / 0.0 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) Potri.001G335200 [exp] 511 / 4e-179 AT5G40780 697 / 0.0 lysine histidine transporter 1 (.1.2) Potri.001G335300 [exp] 501 / 5e-175 AT5G40780 752 / 0.0 lysine histidine transporter 1 (.1.2) Potri.010G055800 [exp] 500 / 8e-175 AT5G40780 670 / 0.0 lysine histidine transporter 1 (.1.2) Potri.010G128300 [exp] 464 / 2e-160 AT1G25530 687 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.008G118000 [exp] 457 / 7e-158 AT1G25530 677 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.014G036500 [exp] 244 / 5e-74 AT1G47670 922 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.002G012900 [exp] 234 / 3e-70 AT1G47670 577 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.004G181200 [exp] 204 / 4e-59 AT1G47670 504 / 3e-175 Transmembrane amino acid transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10008263 pacid=23154280 polypeptide=Lus10008263 locus=Lus10008263.g ID=Lus10008263.BGIv1.0 annot-version=v1.0 ATGTCGACTACTGCTGACGATATAGTTCCTGATCACAGTGATAATACCAACACCACCAATAATAATAATGCATCATCGACGGGTGGAGATTTGAGTAATT GGTTGCCCATCACTGCTTCCAGGAAAGCCAAATGGTGGTACTCAACTTTCCACAATGTTACTGCCATGGTGGGTGCTGGCGTGCTCGGCCTTCCATTTGC TATGTCCGAACTCGGTTGGGGTCCCGGATTGATTGCAATCAGCCTGTCATGGTTGATCACATTCTACTCCTTGTGGCAAATGGTAGAAATGCACGAGCTC GTCCCGGGGAAACGTTTCGACCGTTACCACGAGCTAGGACAACATGCATTTGGGGAGAAGTTAGGATATTGGATAGTGTTCCCTCAACAATTTATTGTTC AGATGGCTTCAAACATAGTGTACATGGTGACTGGAGGTAAATCATTGAAGAAGGCCACTGAATTGGCTTTCCCAGAAACAGGTGGAATCGGGCAAACATA CTTCATCCTAATCTTCTGCATCATCCAACTAGTCCTCTCCCAAACTCCAAACTTCAACTCCCTCAAGATCGTCTCGATCCTTGCTGCAGTGATGTCAGGG AGTTACTCTATGATTGCATTCGTTGCATCAACCATAAAGGGAGCTAGCAGAGTTGGCAAGGGTGTTGTTAGCTACGAGCTAAGGGCCCATACGAAAGCAG GGGTGATATTCGAAGTGTTAAATGGACTTGGTGAGATAGCATTTGCATTTGCGGGACACAGTGTGGTTCTTGAGATACAAGCCACAATCCCTTCAACCCC GGATAAGCCTTCCAAGAAGCCAATGTGGAAAGGTGTGATTGCTGCTTACGCAATCGTCATCGTTTGCTATGGGTCAGTTGCTGCTTCTGGATACTGGGCT TTCGGGAACAAAGTCGACGACGACATTCTTATCTCCCTTGAGCACCCCAACTGGCTCATCTCTGCTGCTAACTTCATGGTCTTCATCCATGTCATTGGTA GCTATCAGATCTTTGCTATGCCAATGTTTGACACAATCGAGGGATTTCTAGTACGAAGATGTAACTTGAGCCCAAGCCGGCCTCTGCGCATAATTGCACG AAGTTTGTATGTAGCGTTGACGGCATTCATTGGAATGTGCATCCCATTTTTTGGGGGTCTATTGGGATTTTTTGGAGGACTAGTGTTTGCTTCCACTTCA TTCTTTCTTCCTTGTATCATATGGTTGGTAGTCAAACGTCCAGCGGCTGGGAGTTGGCATTGGTGCGCATCATGGGTGAGCATCATCGTTGGAGTTTCAA TAGCCATCCTAGCACCCATTGGAGGAATGCGGAGTATTATTCTTTCCGCCAAATCGTACAAGGTAAGGCATCATGCTCAGGCTTGCATGTGTGTGGATTT GTGGGTGTTCCTGTATACCCTTGAGTACATTCGAGGGACTTTCGAAGGTCTTTACCACCCCTTCCATTCCTGTGAGGTTAAAGCAACCTACTTCATCCTC GATTGCGGCAGCAAGGTCCTCCGTTGGTACAAACAGGGAGCGAATGGTAGCAATATAGTTGTGGTGGAATACTTGCAAATTAGAGGGCAAAGCCACATTT GA
AA sequence Show only first row Show all	>Lus10008263 pacid=23154280 polypeptide=Lus10008263 locus=Lus10008263.g ID=Lus10008263.BGIv1.0 annot-version=v1.0 MSTTADDIVPDHSDNTNTTNNNNASSTGGDLSNWLPITASRKAKWWYSTFHNVTAMVGAGVLGLPFAMSELGWGPGLIAISLSWLITFYSLWQMVEMHEL VPGKRFDRYHELGQHAFGEKLGYWIVFPQQFIVQMASNIVYMVTGGKSLKKATELAFPETGGIGQTYFILIFCIIQLVLSQTPNFNSLKIVSILAAVMSG SYSMIAFVASTIKGASRVGKGVVSYELRAHTKAGVIFEVLNGLGEIAFAFAGHSVVLEIQATIPSTPDKPSKKPMWKGVIAAYAIVIVCYGSVAASGYWA FGNKVDDDILISLEHPNWLISAANFMVFIHVIGSYQIFAMPMFDTIEGFLVRRCNLSPSRPLRIIARSLYVALTAFIGMCIPFFGGLLGFFGGLVFASTS FFLPCIIWLVVKRPAAGSWHWCASWVSIIVGVSIAILAPIGGMRSIILSAKSYKVRHHAQACMCVDLWVFLYTLEYIRGTFEGLYHPFHSCEVKATYFIL DCGSKVLRWYKQGANGSNIVVVEYLQIRGQSHI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71680			Transmembrane amino acid trans...		Lus10008263 [exp]	0	1
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10024834 [exp]	1.4	0.9658
AT1G23965			unknown protein		Lus10030641 [exp]	2.0	0.9388
AT3G45600		TET3	tetraspanin3 (.1)		Lus10023218 [exp]	3.0	0.9735
AT5G18430			GDSL-like Lipase/Acylhydrolase...		Lus10004774 [exp]	3.5	0.9145
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10023977 [exp]	5.2	0.9574
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10029390 [exp]	7.4	0.9385
AT1G29430			SAUR-like auxin-responsive pro...		Lus10020440 [exp]	7.5	0.7362
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10010148 [exp]	7.5	0.8565
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10029913 [exp]	8.1	0.9385
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Lus10026877 [exp]	8.8	0.9385

Compare expression of checked genes

Lus10008263 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.