Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19790 72 / 3e-14 AP2_ERF RAP2.11 related to AP2 11 (.1) AT1G72360 59 / 9e-10 AP2_ERF AtERF73, HRE1 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3) AT4G23750 56 / 1e-08 AP2_ERF TMO3, CRF2 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) AT1G24590 55 / 3e-08 AP2_ERF ESR2, DRNL, SOB2, DRN-LIKE FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1) AT5G44210 54 / 3e-08 AP2_ERF AtERF9, ATERF-9 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) AT5G13910 53 / 7e-08 AP2_ERF LEAFY PETIOLE (LEP) LEAFY PETIOLE, Integrase-type DNA-binding superfamily protein (.1) AT4G27950 54 / 9e-08 AP2_ERF CRF4 cytokinin response factor 4 (.1) AT1G12980 54 / 1e-07 AP2_ERF DRN, ESR1 ENHANCER OF SHOOT REGENERATION 1, DORNROSCHEN, Integrase-type DNA-binding superfamily protein (.1) AT5G18560 53 / 2e-07 AP2_ERF PUCHI Integrase-type DNA-binding superfamily protein (.1) AT1G15360 51 / 2e-07 AP2_ERF WIN1, SHN1 WAX INDUCER 1, SHINE 1, Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033259 [exp] 390 / 4e-134 ND 49 / 1e-09 Lus10041372 [exp] 73 / 3e-15 AT5G19790 102 / 1e-27 related to AP2 11 (.1) Lus10036556 [exp] 72 / 4e-15 AT5G19790 104 / 2e-28 related to AP2 11 (.1) Lus10001298 [exp] 71 / 1e-14 AT5G19790 118 / 1e-33 related to AP2 11 (.1) Lus10030430 [exp] 74 / 5e-14 AT5G19790 115 / 1e-29 related to AP2 11 (.1) Lus10012703 [exp] 73 / 1e-13 AT5G19790 119 / 3e-31 related to AP2 11 (.1) Lus10036793 [exp] 72 / 2e-13 AT5G19790 115 / 4e-29 related to AP2 11 (.1) Lus10037137 [exp] 72 / 2e-13 AT5G19790 116 / 2e-29 related to AP2 11 (.1) Lus10013614 [exp] 70 / 4e-13 AT5G19790 148 / 6e-43 related to AP2 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G453100 [exp] 140 / 4e-38 AT5G19790 71 / 5e-14 related to AP2 11 (.1) Potri.011G148900 [exp] 112 / 9e-28 AT5G19790 65 / 5e-12 related to AP2 11 (.1) Potri.014G076702 [exp] 72 / 6e-14 AT5G19790 74 / 5e-15 related to AP2 11 (.1) Potri.002G153500 [exp] 72 / 6e-14 AT5G19790 79 / 6e-17 related to AP2 11 (.1) Potri.003G220200 [exp] 72 / 7e-14 AT5G19790 164 / 1e-49 related to AP2 11 (.1) Potri.017G087800 [exp] 73 / 9e-14 AT5G19790 89 / 3e-20 related to AP2 11 (.1) Potri.013G056700 [exp] 69 / 5e-13 AT5G19790 105 / 4e-27 related to AP2 11 (.1) Potri.008G091300 [exp] 70 / 6e-13 AT5G19790 80 / 5e-17 related to AP2 11 (.1) Potri.001G004700 [exp] 66 / 7e-12 AT5G19790 112 / 1e-29 related to AP2 11 (.1) Potri.019G036100 [exp] 65 / 1e-11 AT5G19790 98 / 3e-24 related to AP2 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10008291 pacid=23173736 polypeptide=Lus10008291 locus=Lus10008291.g ID=Lus10008291.BGIv1.0 annot-version=v1.0 ATGGGGGCACCAGCGCTAGGAGAAGGTATGAAAGGGAAGAACAAGAAGTCTTCCGGCAGAGGACACCACAGGTTCGTCGGAGTTAGGCAGAGGCCTTCGG GAAGATGGGTGGCGGAGATCAAGGATTCTCTTCAGAAAGTTCGCCTGTGGCTCGGGACTTTCGACACGGCCGAGGACGCTGCCCGAGCCTACGATGACGC GGCTCGGGCTTTGCGTGGCGACAACGCCCGAACCAATTTCGAATTGCCTCACCCTGCTGCCGGAGGCGGCCGGGGAGGGCTTTCCGACAACATCGAGCCT TTCTCGTTTGAGGAGGTTTGTGGGACCGGGAGTGAGGCTGCTGACGGGATTCTCGGTGCCCTCAAGGCTAAGCTTCTCGACGGGAAAGGTCTCCGGCTTA ATAACAACAACAGCGTGGGTGCCAGCTCATCAGGTGTGCAATTACCAATCAACCATCGCGGGGGTAAAGACAAGGGTACCGTTGAAAACGGCAACGAGGG TAAAAAGGTAAATAATAACCCGACGACTCAGGTTGGTAGACCACCGAAGCCTCCTCCGAAACCCAGCCAGGACGCTCGGATAGATGGCATGGATCATCAT GCCATGCTGAGACATCAAAATCATCATCATCAACAACAGCAACAACAACAACAAGAGAATTACCAAATTTCCCAACCTGATCATCACCACCAGTCCAATG TTAATCCTCAATACCATCAAGAAATTGATCAAGCAGGAGTACTGAATCTCAACGATTCGAATTATTGGGAGAGGTCCAAAGCTGGGGTGTCTCCATGGCA CGCGATCGCCGCAGCTACAGCGAACAATAACGGAGAATGGACCGACCATAATCAACAACCACCGGCAGCTGTCACATCATATGAGGATCATCAAATGGTG GATCAGTGGCCACATCAGCACCACCACAATGTTAATTCAATAGACACGGCGGCTGCGAATTTGTTCACCACCACGTGCTCGACGTGGCCGACGTCGATTC ACGACCAATCGGGGATTCCGTCTTCGCCGTCGTACATGAATTCCGGCATAAATGTAGCGACGACGAGCAACGTCAACGTTAATCATCATCATCATAACCA AGGAGGATGGACGCCGTCATTGACGGAGCAACAGTTTATGCAAACGGAAATGGGTAATACTGGATGGACGCCTCCACCTCAGATTGGTGGTGGTTCCGGT TGGGACCCGCTTCTCTACGTGTCCTCGGTGCTAGGCTGA
AA sequence Show only first row Show all	>Lus10008291 pacid=23173736 polypeptide=Lus10008291 locus=Lus10008291.g ID=Lus10008291.BGIv1.0 annot-version=v1.0 MGAPALGEGMKGKNKKSSGRGHHRFVGVRQRPSGRWVAEIKDSLQKVRLWLGTFDTAEDAARAYDDAARALRGDNARTNFELPHPAAGGGRGGLSDNIEP FSFEEVCGTGSEAADGILGALKAKLLDGKGLRLNNNNSVGASSSGVQLPINHRGGKDKGTVENGNEGKKVNNNPTTQVGRPPKPPPKPSQDARIDGMDHH AMLRHQNHHHQQQQQQQQENYQISQPDHHHQSNVNPQYHQEIDQAGVLNLNDSNYWERSKAGVSPWHAIAAATANNNGEWTDHNQQPPAAVTSYEDHQMV DQWPHQHHHNVNSIDTAAANLFTTTCSTWPTSIHDQSGIPSSPSYMNSGINVATTSNVNVNHHHHNQGGWTPSLTEQQFMQTEMGNTGWTPPPQIGGGSG WDPLLYVSSVLG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10008291 [exp]	0	1
AT3G01430			unknown protein		Lus10014527 [exp]	2.2	0.9755
AT1G02040	C2H2ZnF		C2H2-type zinc finger family p...		Lus10028173 [exp]	2.2	0.9642
AT3G14260			Protein of unknown function (D...		Lus10001484 [exp]	2.8	0.9682
AT5G65110		ATACX2, ACX2	acyl-CoA oxidase 2 (.1.2)		Lus10041711 [exp]	3.5	0.9648
AT5G45690			Protein of unknown function (D...		Lus10005416 [exp]	4.2	0.9605
AT1G49570			Peroxidase superfamily protein...		Lus10009901 [exp]	4.5	0.9486
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10016204 [exp]	4.9	0.9472
AT4G33495		RPD1	ROOT PRIMORDIUM DEFECTIVE 1, U...		Lus10005755 [exp]	5.5	0.9424
AT5G65110		ATACX2, ACX2	acyl-CoA oxidase 2 (.1.2)		Lus10024038 [exp]	5.7	0.9583
AT5G14890			NHL domain-containing protein ...		Lus10032160 [exp]	8.0	0.9421

Compare expression of checked genes

Lus10008291 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.