Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08250 439 / 3e-150 GRAS GRAS family transcription factor (.1) AT3G03450 181 / 3e-50 GRAS RGL2 RGA-like 2 (.1) AT3G54220 174 / 4e-47 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) AT5G17490 171 / 5e-47 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT5G41920 169 / 5e-47 GRAS GRAS family transcription factor (.1) AT1G66350 164 / 2e-44 GRAS RGL1 RGA-like 1 (.1) AT3G50650 157 / 1e-41 GRAS SCL7 GRAS family transcription factor (.1) AT5G66770 152 / 7e-40 GRAS GRAS family transcription factor (.1) AT1G14920 151 / 1e-39 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT2G01570 150 / 3e-39 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028056 [exp] 766 / 0 AT4G08250 416 / 5e-143 GRAS family transcription factor (.1) Lus10041540 [exp] 209 / 1e-59 AT1G66350 317 / 2e-100 RGA-like 1 (.1) Lus10012554 [exp] 207 / 2e-58 AT1G66350 318 / 1e-99 RGA-like 1 (.1) Lus10020857 [exp] 191 / 3e-54 AT4G08250 164 / 3e-45 GRAS family transcription factor (.1) Lus10033517 [exp] 183 / 1e-51 AT4G08250 162 / 2e-44 GRAS family transcription factor (.1) Lus10040734 [exp] 180 / 6e-49 AT5G41920 410 / 1e-137 GRAS family transcription factor (.1) Lus10016496 [exp] 178 / 2e-48 AT3G54220 663 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Lus10003540 [exp] 172 / 4e-47 AT3G54220 423 / 1e-141 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Lus10033912 [exp] 172 / 5e-47 AT3G54220 414 / 6e-138 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G086100 [exp] 613 / 0 AT4G08250 468 / 6e-162 GRAS family transcription factor (.1) Potri.005G175300 [exp] 612 / 0 AT4G08250 467 / 2e-161 GRAS family transcription factor (.1) Potri.015G008300 [exp] 189 / 3e-54 AT1G55580 398 / 3e-136 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) Potri.019G007100 [exp] 189 / 4e-54 AT4G08250 162 / 1e-44 GRAS family transcription factor (.1) Potri.012G020200 [exp] 188 / 5e-54 AT1G55580 415 / 8e-143 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) Potri.005G095100 [exp] 187 / 8e-53 AT1G66350 252 / 3e-77 RGA-like 1 (.1) Potri.001G326000 [exp] 187 / 8e-52 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.005G190300 [exp] 182 / 2e-51 AT4G08250 138 / 7e-36 GRAS family transcription factor (.1) Potri.006G114200 [exp] 174 / 2e-46 AT3G54220 639 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.001G473200 [exp] 168 / 2e-46 AT1G55580 405 / 4e-139 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10008316 pacid=23178483 polypeptide=Lus10008316 locus=Lus10008316.g ID=Lus10008316.BGIv1.0 annot-version=v1.0 ATGGCCGCCATTAATGGCTTCCACTACCACCATGATCACCTCGACCTCTCCAGCCACACCTCCAGCACCACCACCACCACTAGAACCACCACCACCACCA CCGACGACGACACTTACAAATGGGACCAAGGCTGGTCGCCGGTAGTCGACTGGGAAGTACTCTCAGGCGGCCACCACGACGACTTCCACCACCTCCTCAT CGACTCCATGCTCGAGGACGAATCCAGCGAAGATTCCGCCAATGGGTTCAGCCCCGCTGTCACCACCCCCACCGCCGCTGTTACCACCTCCGGCGACGAC TTTTCGGCGGAGAACATGATGATTGTCGGCGAAGAAGAAGAAGAAGAAGAAGTGGAAGAGCGAGAAGAAGAGGATTTCAAGGGGCTGAGATTAGTCCACC TTTTGATGGCGGCGGCGGAGGCTCTCACCGGTCCGGCGAAGAGCAACGATCTCGCCCGTGTGATATTGGTTCGGCTCAAGGAATTGGTCTCCCCTAACCA CGGATCCAACATGGAGCGATTGGCCGCTCAGTTCGCCGACGCGTTGAACTTTTTGCTTGACGGCGGCGGGAATAAGCATTCGGCGAATGTTTATCACGGT GGCGGATGCCGCGACGAGTACGGACAGGCGGATGTTATGGCGGCGTTTCAGCTGCTTCAGGACATGTCGCCGTACGTGAAGTTCGGACATTTCACGGCGA ATCAGGCGATCTTGGAAGCGGTGACTCACGACCGTCGGATCCACATCGTCGATTACGATATCATGGAAGGGATCCAATGGGCCTCGCTTTTGCAATCCTT AGTGTCTAGAAAAGAAGGCCCCCCTACCCCGCATCTACGAATCACGGCCCTCACACGTGGCGGCAGTAGCAACGCCGTCAATCGGAGGTCGATCGGCACC GTGCAGGAGACCGGCCGGCGATTGGTCGCATTCGCCGCCTCGATCGGCCAACCGTTCTCCTTCCACCAATGTCGGCTCGACTCTGACGAGTCTTTCCGAC CGTCCGCTGTCAAACTCGTCAGAGGAGAGGCATTGGTGCTGAATTGCATGCTCCACTTACCGCATTTCACCTACCGATCTCCCAAGTCAGTAGCCTCGTT CCTAAACGGGGCTCGATTGCTCAACCCGAGATTGGTTACCCTAGCGGAAGAGGAACTAGGCCCCACCGAGAAAACTCACACTAGCGGACATTCAGGTTCA GGCGATGATTTTTTGAGTCGATTTATGGACACTCTGCATCACTACTCAGCCGTGTACGACTCATTAGAGGCAGGATTTCCAATGCAAGGTCGAGCTAGGG CGCTAGTCGAGCGTGTGTTCTTAGGCCCGCGGATATCTGGATCACTGGCTCGGATATATAGGGGCCGAGAAAAGGAAGAGGGCGGGTCGTGGTGGGAGTG GCTAACGGCGGCTGGGTTTCGGAGAGAAGGTGTGAGCTTTGCCAATCATTGTCAGGCCAAGCTACTTCTTGGACTTTTCAACGATGGGTACAGAGTGGAA GAAATGGGCTGTAACCGTTTGGTGTTGGGCTGGAAGTCCAGGCGTTTACTCTCCGCTTCCATTTGGACTCCGCCGTCCGTTTCTGATTCCGAATCAAGCT AA
AA sequence Show only first row Show all	>Lus10008316 pacid=23178483 polypeptide=Lus10008316 locus=Lus10008316.g ID=Lus10008316.BGIv1.0 annot-version=v1.0 MAAINGFHYHHDHLDLSSHTSSTTTTTRTTTTTTDDDTYKWDQGWSPVVDWEVLSGGHHDDFHHLLIDSMLEDESSEDSANGFSPAVTTPTAAVTTSGDD FSAENMMIVGEEEEEEEVEEREEEDFKGLRLVHLLMAAAEALTGPAKSNDLARVILVRLKELVSPNHGSNMERLAAQFADALNFLLDGGGNKHSANVYHG GGCRDEYGQADVMAAFQLLQDMSPYVKFGHFTANQAILEAVTHDRRIHIVDYDIMEGIQWASLLQSLVSRKEGPPTPHLRITALTRGGSSNAVNRRSIGT VQETGRRLVAFAASIGQPFSFHQCRLDSDESFRPSAVKLVRGEALVLNCMLHLPHFTYRSPKSVASFLNGARLLNPRLVTLAEEELGPTEKTHTSGHSGS GDDFLSRFMDTLHHYSAVYDSLEAGFPMQGRARALVERVFLGPRISGSLARIYRGREKEEGGSWWEWLTAAGFRREGVSFANHCQAKLLLGLFNDGYRVE EMGCNRLVLGWKSRRLLSASIWTPPSVSDSESS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08250	GRAS		GRAS family transcription fact...		Lus10008316 [exp]	0	1
AT5G05600			2-oxoglutarate (2OG) and Fe(II...		Lus10004808 [exp]	1.0	0.9874
					Lus10021010 [exp]	1.4	0.9819
AT1G71520	AP2_ERF		Integrase-type DNA-binding sup...		Lus10041044 [exp]	3.0	0.9801
AT3G23230	AP2_ERF	ERF98	Integrase-type DNA-binding sup...		Lus10022936 [exp]	4.8	0.9667
AT1G47670			Transmembrane amino acid trans...		Lus10022641 [exp]	8.2	0.9799
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10034300 [exp]	10.8	0.9655
AT1G02030	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10027220 [exp]	12.5	0.9707
AT5G52400		CYP715A1	"cytochrome P450, family 715, ...		Lus10027480 [exp]	16.5	0.9691
					Lus10024872 [exp]	16.7	0.9763
					Lus10003173 [exp]	17.7	0.9724

Compare expression of checked genes

Lus10008316 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.