Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12010 384 / 3e-114 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G18360 317 / 2e-92 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G17680 323 / 4e-92 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G44510 298 / 4e-84 TAO1 target of AVRB operation1 (.1) AT4G11170 293 / 1e-82 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G16890 294 / 3e-82 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G51630 293 / 3e-82 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT4G19510 290 / 6e-82 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT4G36150 291 / 2e-81 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT2G14080 290 / 3e-81 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028060 [exp] 1664 / 0 AT4G12010 363 / 1e-106 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10008221 [exp] 1113 / 0 AT4G12010 400 / 8e-120 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10028058 [exp] 1097 / 0 AT4G12010 367 / 3e-108 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10023051 [exp] 895 / 0 AT4G12010 415 / 2e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10008222 [exp] 874 / 0 AT4G12010 327 / 4e-96 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10018021 [exp] 724 / 0 AT4G12010 434 / 5e-131 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10015648 [exp] 716 / 0 AT4G12010 420 / 1e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10016029 [exp] 659 / 0 AT4G12010 451 / 2e-138 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10009107 [exp] 645 / 0 AT4G12010 347 / 4e-101 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G068300 [exp] 456 / 3e-141 AT5G17680 580 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068200 [exp] 453 / 3e-140 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G010800 [exp] 447 / 1e-137 AT5G17680 592 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070700 [exp] 419 / 2e-126 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069500 [exp] 412 / 2e-122 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G113701 [exp] 407 / 9e-122 AT5G17680 596 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070393 [exp] 401 / 3e-118 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069600 [exp] 391 / 4e-115 AT5G17680 647 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.004G088500 [exp] 372 / 7e-109 AT1G69550 647 / 0.0 disease resistance protein (TIR-NBS-LRR class) (.1) Potri.019G098500 [exp] 363 / 1e-108 AT5G17680 496 / 4e-157 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10008320 pacid=23178496 polypeptide=Lus10008320 locus=Lus10008320.g ID=Lus10008320.BGIv1.0 annot-version=v1.0 ATGGCTTCCTCATCTACTACCCCTCCGTATACAGGGCAATGGCAACACGAAGTTTTCTTGTGCTTCAGAGGCGACGACGTGAGGGACAATTTCATGAGCC ACCTTGAACGAGCTCTGAAGTCACGGAACATCGACTACTTCATCGACACCAAGCTTAATCCAACGCAGGACAATGAGGAACTGCTCGGGATCCTGGAAAG GACGGCAGTTTCAGTGGTGATTTTTTCAGTCAAGTTTGCTGATTCGAGCTGGTGCTTGGACGAGGTCTGCACCATCGCTGAAAGCATTGAGAAATACAGA CACAGGGTACTTCCGGTATTCTACAACGTGGATTGGAACACAGTGATCGGCGGCGGCAACTACCATTGGTTCAATGACTGGAAATCATCCTTCCTCTCTT GCTTTGTCCCTCAGCCCACGCCGTACGCTAAAACTATCGCTGGACTGGAGGCCACCCAAGAGCGCAAGAAGAAATGGATAGCTTCTTTGAAGACAGTAGC TTCCAAGACTGGGTGTACCTCTGAATCAATTCCCATCGATGCCGAGTTAGTTGAGAAGGTTGTGGCAGACGTCATTGCAACACTAGCATCCATGTCACCA AGCATCGAGTACAAAAATTTGGTTGGTATGGATACACGCGTCTCAAAGGTCGAGGAATTGTTAGCCATGGATGATGGCGACACCAGTCTCATTGTCGGAC TATGGGGACTGGGAGGTCTAGGTAAATCGACTCTAGCCAGGACGTGTTATGAAAAATTGAGGAAACCAAATGAAAAGAAGATGAAGTTTCATTTTGTCGA GAAAATCAATGAGACATGCGATAAATCAAGTCCGGTTAAACTATTAGTGAAGGAACTCTACTCAACATTGCTGAATGAGGAGCCTGTTAAGAGTGGAGTT GAGATTAGAGGGGAACGTCTTCCGCGTTTAAAAGTCTTTGTTGTTCTTGACGATGTGCAGAGCATTCCACAGCTGAATGAGTTGCTGTTAGAAAAGGCGT TGAAACTCACAGAACTCTTTGCTCCCGGAAGCAGAATAATCATAACTACGAGGAATAAGGCTGTGCTGGAATACGCAACCGCGAAGATGTATGAAGTTGA TCATCTCAATGATGGCGAGTCACTTGAACTCTTTAAATTAAATGCTTTTGAGGACCCGGGACATATTCGACATGTTGAACTATCACGTAAAGTTGTGACG TACTGTCAGGGGAATCCATTGGCCCTGAAAGTGTTAGGAGCCACGTTGCTACGCAAGGACGAACCATACTGGGAGAGTTTCTTGGGCAAATTAGGAGAAA TCCAGGACCAAACAATCCATTCTGTTCTCAGACGAAGCTACGACGAGTTGGGAAATGATGATAAGAGGCTGTTCCTGGATATTTCCTGCTTCTTTTATGG TACTGTCAGGTCCTTGTTGGTGAAGTATATGGATTCTATTTACATCACTTCATATCACAGAGTTGAGGATCTGATCCACAAGTCTCTACTAATGACTACT GATGACAAGATACACGGAGCGAAAGTTACGGTGCATAGTTTACTGAGAGAAATGGCTTGGAACGTTGTCAACGAGGAAGAAATTATCGGAGACCGCAGCA GACTTAAAAACCATGATGACATTCGCATCTTGTTGAGTCAAGAGGGAAAAAGAGCAACCCAAGGGATATGTTTGGACCTTTCCAAAGCTGATGTTATGTT TCTGAAAGCTGATGCTTTCAAAGGGATGGACTGTCTTAAATGGCTCGACTTTGGCTGGCCGAATTCTGTTGAATACGCCAACCGCAAAATCCAACTATCG GATGGCGACATTAACTACCTTCCAAATGAGTTAAGGGGCTTGAATTGGGATCACTTCCCTTGCCATTCTTTGCCGTTGGGATTTTCTCCTAGAAAACTCG TTTACCTCGTCATACGCCATAGTCCGATTGGCTTCTGTTGGGAGCGAAATCAACCTAAGCTTGAGCACCTGATGTTGCTCTGCCTCTCCAACTGTGAGAA TCTAGCTATTGTTCCGGACCTGTCGTTCTGTTCAAATCTGGAACACATTCTACTCCGTGGATGCAGCACCTTAGTTGCGTTACCGGCAAGCATTCAATTC CTTGAAAAGCTGGTAACGTTGGATGCCAGAGATTGTCGAAATCTCCAGCTGGTACCATTAGAGATCAACTCCAAGTTCCTTAAACAACTTTTGCTCTCCA ACTGTCCCAAACTCACCGGCTGTCCCAAGGTTTACTCTCTAGAATTGCAGGCTCTGGATTTAGACGGGACACCCATTGGATCCCTCCCCGATTCAATCAA CAAGGTTAAGCAGGATGGCGTAGTAAGCCTCTACGGCCCATGCATTGCGCATTTCCCGCAAATTCCTACCGGATTATCACTCCTCCTTCTGCGCAAAACC GCAATCCAAGAAATCAAAATCGAGCTTCAGCCTCAGCAGCAGCTGAAGTTTGACCGGTTGCATTTGATCTGGAATGCCCAGCTCACCACTTTACCTACGG AGATCTGGGATATGGTCTCCAACGAACTCATCGTCGAGGATTGTCCATTGATCGAATGTTTACCAGTGATATCGGAGCCTCGTTCGTACAGCTTAACAAC GCTCCACATTGCTGGCTGCAAAAAGATCGCCGAGTTCCCGGCTTCCATATGCAAACTCGAGTGTTTGGAGGTACTGGTTTTTGTAGGCACGGATATCGAG TCTTTGCCTACAAGTATTGGGGAGCTGAAGCAGCTGTCGTATTTAGACCTCTCGTACAGTACAAGACTGAAATCGGTACCTGGTACCATCAGCGAGCTCG GGAAGCTATCCGAGCTTGTGCTGATTGGGTGTGGGAGCAGTCTGTCTTTGCCGGAACTACTCCCACCCAATCTTAATGTTGTGAAGGAGAAAAAATATCA CAGGACGTCCACATTACAAACACTGTTGAGAACCATCATCGTGGATCAGAAATCAAACGACCTGATGCTTGATTTCCGCGCGCTACTAGCTGGAAGTTCG GTTGTGAGTACCAAACTTCCACTTCAGAACATGTCGAGATGTCCCTTCGAGGCCGGTGCCTCTTCATTTTGTCATCGAAGCGTAATAACGAGGGTAGCGA AGCTTAGGCAAAAAGAGTTGCGCGCCGACGAAGCTACTGGCGGACCAATGCGTAGGCAAAAACGAGAAAGGCAGAGTCGAGATCAGAATCAGGATCGTGT GTTTACTGTACCGACCCAACAGTTAGATGCTTATGATAGGCCATTGCCCGATCACCGTAACAGTGTCGAAGACCAATCGTTACTTTCTGCCCTGAATCCA GAAATACACAAGGCACTTAATAGAAGTATCAAGCGAGCGTCGGTCTTGAAAAAGATGCCCATACTGACGACGCTAAGTAAAAATGGCGGTTATCAGGCGC CTTACACCATTCTCCAAATCAAGACGGCTGGGAAAAAAGTACATCAGCCGGCGATTTTGGATTTGATAGAAAACCGTATATCATTCCTTCCTAATAACTC AAATTGTTAG
AA sequence Show only first row Show all	>Lus10008320 pacid=23178496 polypeptide=Lus10008320 locus=Lus10008320.g ID=Lus10008320.BGIv1.0 annot-version=v1.0 MASSSTTPPYTGQWQHEVFLCFRGDDVRDNFMSHLERALKSRNIDYFIDTKLNPTQDNEELLGILERTAVSVVIFSVKFADSSWCLDEVCTIAESIEKYR HRVLPVFYNVDWNTVIGGGNYHWFNDWKSSFLSCFVPQPTPYAKTIAGLEATQERKKKWIASLKTVASKTGCTSESIPIDAELVEKVVADVIATLASMSP SIEYKNLVGMDTRVSKVEELLAMDDGDTSLIVGLWGLGGLGKSTLARTCYEKLRKPNEKKMKFHFVEKINETCDKSSPVKLLVKELYSTLLNEEPVKSGV EIRGERLPRLKVFVVLDDVQSIPQLNELLLEKALKLTELFAPGSRIIITTRNKAVLEYATAKMYEVDHLNDGESLELFKLNAFEDPGHIRHVELSRKVVT YCQGNPLALKVLGATLLRKDEPYWESFLGKLGEIQDQTIHSVLRRSYDELGNDDKRLFLDISCFFYGTVRSLLVKYMDSIYITSYHRVEDLIHKSLLMTT DDKIHGAKVTVHSLLREMAWNVVNEEEIIGDRSRLKNHDDIRILLSQEGKRATQGICLDLSKADVMFLKADAFKGMDCLKWLDFGWPNSVEYANRKIQLS DGDINYLPNELRGLNWDHFPCHSLPLGFSPRKLVYLVIRHSPIGFCWERNQPKLEHLMLLCLSNCENLAIVPDLSFCSNLEHILLRGCSTLVALPASIQF LEKLVTLDARDCRNLQLVPLEINSKFLKQLLLSNCPKLTGCPKVYSLELQALDLDGTPIGSLPDSINKVKQDGVVSLYGPCIAHFPQIPTGLSLLLLRKT AIQEIKIELQPQQQLKFDRLHLIWNAQLTTLPTEIWDMVSNELIVEDCPLIECLPVISEPRSYSLTTLHIAGCKKIAEFPASICKLECLEVLVFVGTDIE SLPTSIGELKQLSYLDLSYSTRLKSVPGTISELGKLSELVLIGCGSSLSLPELLPPNLNVVKEKKYHRTSTLQTLLRTIIVDQKSNDLMLDFRALLAGSS VVSTKLPLQNMSRCPFEAGASSFCHRSVITRVAKLRQKELRADEATGGPMRRQKRERQSRDQNQDRVFTVPTQQLDAYDRPLPDHRNSVEDQSLLSALNP EIHKALNRSIKRASVLKKMPILTTLSKNGGYQAPYTILQIKTAGKKVHQPAILDLIENRISFLPNNSNC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12010			Disease resistance protein (TI...		Lus10008320 [exp]	0	1
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10021203 [exp]	5.0	0.7011
AT2G34440	MADS	AGL29	AGAMOUS-like 29 (.1)		Lus10040832 [exp]	6.5	0.5807
AT4G25120		ATSRS2	ARABIDOPSIS THALIANA SUPPRESSO...		Lus10036008 [exp]	7.2	0.6168
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Lus10024706 [exp]	10.7	0.6592
AT3G12910	NAC		NAC (No Apical Meristem) domai...		Lus10015743 [exp]	16.2	0.6504
					Lus10028949 [exp]	25.3	0.6270
AT3G09290	C2H2ZnF	TAC1	telomerase activator1 (.1)		Lus10021213 [exp]	26.9	0.6460
AT3G16650			Transducin/WD40 repeat-like su...		Lus10001473 [exp]	29.0	0.5822
AT2G31180	MYB	ATMYB14, Myb14a...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10022021 [exp]	30.0	0.6445
AT4G29340		PRF4	profilin 4 (.1)		Lus10012935 [exp]	32.4	0.6445

Compare expression of checked genes

Lus10008320 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.