Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23810 352 / 2e-114 AAP7 amino acid permease 7 (.1.2) AT5G09220 340 / 2e-109 AAP2 amino acid permease 2 (.1) AT5G63850 330 / 3e-106 AAP4 amino acid permease 4 (.1) AT1G44100 322 / 1e-102 AAP5 amino acid permease 5 (.1) AT1G77380 316 / 1e-100 AAP3, ATAAP3 amino acid permease 3 (.1) AT5G49630 305 / 2e-96 AAP6 amino acid permease 6 (.1) AT1G58360 304 / 1e-95 NAT2, AAP1 NEUTRAL AMINO ACID TRANSPORTER 2, amino acid permease 1 (.1) AT1G10010 300 / 2e-94 AAP8, ATAAP8 amino acid permease 8 (.1) AT5G40780 130 / 2e-32 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G61270 120 / 1e-28 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010580 [exp] 408 / 1e-135 AT5G23810 547 / 0.0 amino acid permease 7 (.1.2) Lus10027130 [exp] 380 / 8e-125 AT5G23810 509 / 1e-178 amino acid permease 7 (.1.2) Lus10042744 [exp] 335 / 1e-108 AT1G77380 667 / 0.0 amino acid permease 3 (.1) Lus10029707 [exp] 336 / 6e-108 AT1G77380 759 / 0.0 amino acid permease 3 (.1) Lus10028546 [exp] 332 / 1e-107 AT1G77380 552 / 0.0 amino acid permease 3 (.1) Lus10018852 [exp] 331 / 3e-106 AT1G77380 702 / 0.0 amino acid permease 3 (.1) Lus10037150 [exp] 330 / 1e-105 AT1G77380 680 / 0.0 amino acid permease 3 (.1) Lus10042740 [exp] 328 / 9e-105 AT1G77380 698 / 0.0 amino acid permease 3 (.1) Lus10029702 [exp] 327 / 2e-104 AT1G77380 706 / 0.0 amino acid permease 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G167532 [exp] 642 / 0 AT5G23810 396 / 1e-132 amino acid permease 7 (.1.2) Potri.001G470000 [exp] 400 / 5e-133 AT5G23810 570 / 0.0 amino acid permease 7 (.1.2) Potri.011G167000 [exp] 396 / 1e-131 AT5G23810 573 / 0.0 amino acid permease 7 (.1.2) Potri.011G167200 [exp] 395 / 2e-131 AT5G23810 518 / 0.0 amino acid permease 7 (.1.2) Potri.001G470200 [exp] 365 / 1e-119 AT5G09220 543 / 0.0 amino acid permease 2 (.1) Potri.005G068900 [exp] 337 / 3e-108 AT5G09220 799 / 0.0 amino acid permease 2 (.1) Potri.002G079500 [exp] 334 / 2e-107 AT1G77380 766 / 0.0 amino acid permease 3 (.1) Potri.007G100100 [exp] 325 / 2e-103 AT5G09220 768 / 0.0 amino acid permease 2 (.1) Potri.002G079700 [exp] 323 / 3e-103 AT1G77380 756 / 0.0 amino acid permease 3 (.1) Potri.005G181600 [exp] 320 / 5e-102 AT1G77380 746 / 0.0 amino acid permease 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10008352 pacid=23178461 polypeptide=Lus10008352 locus=Lus10008352.g ID=Lus10008352.BGIv1.0 annot-version=v1.0 ATGGGGACTGGAAAAGATAAGGAATCAATCGCAACTGATTACGACGACAAAACTGTCGCGTTTCTCCAAAACCAACACTCTTCCACCTACTCCTCTTCTT CCTCTTGCGTGAAGGACGACGAAGCTTACCCCGGCAGCGGCGGAGTATTAGTAAACAGGAGCGGCACGGTATGGACGGCGGTGGCGCACATAATCACGGG CGTAATCGGATCGGGAGTCCTCTCGCTACAATGGAGCATGGCTCAGTTAGGTTGGATTGCCGGACCCGCCGCGATGCTTCTATTCGCCGCCATAACTCTG CTCTCCGCTTTCCTTCTCTGCGATTGCTACCGATCTCCTCACCCCTTGCTCGGCCCTTCCCGCAATCGGTCGTATCTTGACGCCGTCCTTCTAACTTTAG GGAGAAAGAACGCATGGGCATGTGGAGTGCTGGTACAGACAAGTATGTACGGCATTGGGATTGCCTACACGATCACTGCTGCAATTAGCATGAGGGCGAT TCAGGAATCGGCGTGTAGTAGTATTTACAATGATAAGAAAGGGGGTGGTGGGTGTGAGGGTGGTGGAGGGATGAGCTCATACATGATAATGTTCGGAGTG GCGGAGTTGTTCATGTCTCAAATCCCAAACTTCCACGACATTCAGTGGCTTTCCAATGTCGCCGCCGTCATGTCTTTCGCTTACTCCTTCATCGGTCTCG GCCTTGGCTTCGCTCGTGTCTTAGATAAGGAATCAATCGCAACTGATTACGACGACAAAACTGTCGCGTTTCTCCAAAACCAACACTCTTCCACCTACTC CTCTTCTTCCTCTTGCGTGAAGGACGACGAAGCTTACCCCGGCAGCGGCGGAGTATTAGTAAACAGGAGCGGCACGGTATGGACGGCGGTGGCGCACAGA AACACACGCGGAAACGGAGCGGGAGGAGACTCCCCACATTTTTCTGGGAGAAAGAACGCATGGGCATGTGGAGTGCTGGTACAGACAAGTATGTACGGCA TTGGGATTGCCTACACGATCACTGCTGCAATTAGCATGAGGGCGATTCAGGAATCGGCGTGTAGTAGTATTTACAATGATAAGAAAGGGGGTGGTGGGTG TGAGGGTGGTGGAGGGATGAGCTCATACATGATAATGTTCGGAGTGGCGGAGTTGTTCATGTCTCAAATCCCAAACTTCCACGACATTCAGTGGCTTTCC AATGTCGCCGCCGTCATGTCTTTCGCTTACTCCTTCATCGGTCTCGGCCTTGGCTTCGCTCGTGTCTTAGGAAATGGATATGTGAAGGGGAGCATCACAG GAGTGAGAGCAAAGGACGGGGTTGATAAGATGTGGAAGGTATCTCAAGCACTTGGGGACATTGCATTTGCCTATCCCTATTCTTTGATTCTTATTGAAAT CCAGGACACGTTGAAATCGCCGCCGTCGGAGAGCGAGACGATGAAGAAAGCGTCGGTTGCGGCGATAATAATGACGACCTTCTTCTACATGTGCTGCGGC GGATTCGGATACGCGGCCTTTGGAGAGGAGACACCTGGCAACCTCTTGACCGGCTTCCACCAGCCATTCTGGCTCATTGACTTCGCTCATATTTGCATCG TCTTCCACCTCCTTGGCGGCTATCAGGTGTACAGCCAGCCAATATTCGCAAACGCAGAGAAATGGTTCGTAGAGGCATATCCGGACAACATCCTGGTACG CCGCCAAAGCAGTTACAGGTTGAAAGTTCCGGCCGCGACCAATCGGTATTTCGAGGTGAACCTGCTGAGGCTGTGCTTCAGGACGCTGTACGTGGTGACG ACAACAGGGATAGCGATGATGTTCCCGTACTTCAACCAGGTGATCGGAGTGCTGGGAGGGTTCATGTATTGGCCGGTGAGCATATATTTCCCCGTGGAGA TGTATCTGAGGCAGAAAGACATCGAAGCTTGGTCGCTCAAGTGGGGGATGCTACGTTTGTTCAGTGTGGTTTGTCTTTTTGTGATTTGCTTTGCTTTGGT CGGATCAGTTCAGGGTCTCGTCACTGCACACTCCGGCTCCGGCGCCTGA
AA sequence Show only first row Show all	>Lus10008352 pacid=23178461 polypeptide=Lus10008352 locus=Lus10008352.g ID=Lus10008352.BGIv1.0 annot-version=v1.0 MGTGKDKESIATDYDDKTVAFLQNQHSSTYSSSSSCVKDDEAYPGSGGVLVNRSGTVWTAVAHIITGVIGSGVLSLQWSMAQLGWIAGPAAMLLFAAITL LSAFLLCDCYRSPHPLLGPSRNRSYLDAVLLTLGRKNAWACGVLVQTSMYGIGIAYTITAAISMRAIQESACSSIYNDKKGGGGCEGGGGMSSYMIMFGV AELFMSQIPNFHDIQWLSNVAAVMSFAYSFIGLGLGFARVLDKESIATDYDDKTVAFLQNQHSSTYSSSSSCVKDDEAYPGSGGVLVNRSGTVWTAVAHR NTRGNGAGGDSPHFSGRKNAWACGVLVQTSMYGIGIAYTITAAISMRAIQESACSSIYNDKKGGGGCEGGGGMSSYMIMFGVAELFMSQIPNFHDIQWLS NVAAVMSFAYSFIGLGLGFARVLGNGYVKGSITGVRAKDGVDKMWKVSQALGDIAFAYPYSLILIEIQDTLKSPPSESETMKKASVAAIIMTTFFYMCCG GFGYAAFGEETPGNLLTGFHQPFWLIDFAHICIVFHLLGGYQVYSQPIFANAEKWFVEAYPDNILVRRQSSYRLKVPAATNRYFEVNLLRLCFRTLYVVT TTGIAMMFPYFNQVIGVLGGFMYWPVSIYFPVEMYLRQKDIEAWSLKWGMLRLFSVVCLFVICFALVGSVQGLVTAHSGSGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23810		AAP7	amino acid permease 7 (.1.2)		Lus10008352 [exp]	0	1
AT1G70000	MYB		myb-like transcription factor ...		Lus10036678 [exp]	2.8	0.8453
AT3G16910		AAE7, ACN1	ACETATE NON-UTILIZING 1, acyl-...		Lus10037735 [exp]	3.7	0.8841
AT1G60010			unknown protein		Lus10030651 [exp]	15.9	0.8026
AT5G45820		PKS18, CIPK20, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10034212 [exp]	16.2	0.7868
AT3G57340			Heat shock protein DnaJ, N-ter...		Lus10019421 [exp]	16.9	0.8313
AT4G37880			LisH/CRA/RING-U-box domains-co...		Lus10027883 [exp]	16.9	0.7998
AT2G01410			NHL domain-containing protein ...		Lus10031240 [exp]	21.6	0.8157
AT4G37420			Domain of unknown function (DU...		Lus10016022 [exp]	23.6	0.7800
AT5G43280		ATDCI1	"delta\(3,5\),delta\(2,4\)-die...		Lus10002583 [exp]	27.2	0.8027
AT5G58950			Protein kinase superfamily pro...		Lus10011173 [exp]	27.9	0.8220

Compare expression of checked genes

Lus10008352 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.