Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24190 273 / 2e-91 SDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G61220 268 / 4e-89 SDR1 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G01800 252 / 4e-83 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G51030 207 / 3e-65 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G59710 186 / 3e-57 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G61830 186 / 7e-57 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G50700 60 / 6e-10 HSD1 hydroxysteroid dehydrogenase 1 (.1) AT5G50600 60 / 6e-10 ATHSD1 hydroxysteroid dehydrogenase 1 (.1) AT4G09750 57 / 3e-09 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G24360 56 / 7e-09 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019546 [exp] 432 / 8e-154 AT2G24190 253 / 2e-83 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10001968 [exp] 290 / 2e-98 AT5G61830 130 / 2e-37 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040933 [exp] 276 / 3e-92 AT3G61220 342 / 1e-118 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014688 [exp] 270 / 1e-89 AT3G61220 348 / 8e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014690 [exp] 263 / 3e-87 AT3G61220 335 / 2e-115 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10040932 [exp] 263 / 8e-87 AT3G61220 327 / 3e-112 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014689 [exp] 267 / 1e-85 AT3G61220 336 / 2e-112 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10006894 [exp] 251 / 2e-82 AT3G61220 325 / 1e-111 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014694 [exp] 248 / 4e-81 AT3G61220 369 / 4e-129 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G158200 [exp] 427 / 6e-151 AT2G24190 283 / 1e-94 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.004G235500 [exp] 290 / 8e-98 AT3G61220 313 / 7e-107 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G157000 [exp] 284 / 2e-95 AT3G61220 406 / 9e-144 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G080000 [exp] 283 / 7e-95 AT3G61220 332 / 2e-114 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.004G235600 [exp] 279 / 3e-93 AT3G61220 285 / 1e-95 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156800 [exp] 278 / 5e-93 AT3G61220 363 / 1e-126 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156300 [exp] 278 / 7e-93 AT3G61220 367 / 6e-128 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156600 [exp] 270 / 9e-90 AT3G61220 348 / 7e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G080100 [exp] 268 / 4e-89 AT3G61220 350 / 3e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.015G108400 [exp] 213 / 2e-67 AT5G51030 468 / 2e-167 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10008413 pacid=23163473 polypeptide=Lus10008413 locus=Lus10008413.g ID=Lus10008413.BGIv1.0 annot-version=v1.0 ATGGAGATCACAGGGAAGAAACCAACAGCCAGCAGGGTTGCGGTGGTGACGGGAGCGAACAAGGGGATAGGGCTGGAGATAGTGAAGCAACTGGCTGGCC ATGGGATTACTACTGTGGTGCTTACTGCCAGAGATGTAAAGAGAGGGACTGATGCAACTTCAAGTCTCCATCAGATGGGACTGCATAATGTTGTCTTCCA TCAGCTTGATGTGCTCGACTCCCTCAGCATCACCAACTTGGCTGAATTCATCGTCACGAAATTTGGGGTGCTGGATATCTTGGTGAACAATGCTGGAGCC TCAGAAGTTGCTGTGGACGAGGGGCGCCTCCGGGACCTGAAAATAGATGCACAAACATGGCTTTCAGGGAAGGCAGCTCATTTGATACAAGATGCAGTTA AACATACCTATGAGAAGGCAGAGGAATGCTTAAAAACCAATTTCTATGGTGTCAGAGCCACAACTGAGGCTCTCCTCCCACTTCTTAAGCTTTCCACACA TGGTGCCAGGGTAGTTAACATCTCCTCCCTCAGGGGAGAGCTTCAGAGGATTCCAAGCGAAGAAGTGAGAAACGAACTCGGGAATGTTGAGTCACTGAAT GAGAGCAAGCTGGATGCAATACTGAAGAGGTTTCTGGAGGATTGCAAAGATGATAACCTCAAGGCTGGTGGGTGGCCATTGATGTTGCCGGCATACAGCA TCTCCAAGGCAGCTGTGAATGCATACACCAGAGTCCTTACGAAGAGGCACCCCGAGATGAAGATAAACTGCATTCATCCAGGGTTCATTAGTACGGATCT GAACTATCACACAGGGACAATGACAGTGGAACAAGGGGCTAGAGGGCCTGTTAAGTGTGCTCTTTTACCTGATGATGGCCCCAGTGGTTGCTATTTCGAT CAGACTGAAGTTGCCAGCTTTTGA
AA sequence Show only first row Show all	>Lus10008413 pacid=23163473 polypeptide=Lus10008413 locus=Lus10008413.g ID=Lus10008413.BGIv1.0 annot-version=v1.0 MEITGKKPTASRVAVVTGANKGIGLEIVKQLAGHGITTVVLTARDVKRGTDATSSLHQMGLHNVVFHQLDVLDSLSITNLAEFIVTKFGVLDILVNNAGA SEVAVDEGRLRDLKIDAQTWLSGKAAHLIQDAVKHTYEKAEECLKTNFYGVRATTEALLPLLKLSTHGARVVNISSLRGELQRIPSEEVRNELGNVESLN ESKLDAILKRFLEDCKDDNLKAGGWPLMLPAYSISKAAVNAYTRVLTKRHPEMKINCIHPGFISTDLNYHTGTMTVEQGARGPVKCALLPDDGPSGCYFD QTEVASF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24190		SDR2	short-chain dehydrogenase/redu...		Lus10008413 [exp]	0	1
AT4G22200		AKT3, AKT2/3	potassium transport 2/3 (.1)		Lus10003644 [exp]	4.2	0.7741
AT1G54140		TAF9, TAFII21	TBP-ASSOCIATED FACTOR 9, TATA ...		Lus10001863 [exp]	5.5	0.7555
AT1G27170			transmembrane receptors;ATP bi...		Lus10008414 [exp]	9.2	0.7655
AT3G01570			Oleosin family protein (.1)		Lus10003742 [exp]	9.5	0.6822
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10008212 [exp]	20.9	0.7176
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10015076 [exp]	21.6	0.6839
AT1G42480			unknown protein		Lus10013214 [exp]	21.9	0.5169
AT4G21020			Late embryogenesis abundant pr...		Lus10015427 [exp]	24.1	0.6153
AT2G02850		ARPN	plantacyanin (.1)		Lus10041848 [exp]	29.3	0.6363
AT4G18360			Aldolase-type TIM barrel famil...		Lus10042495 [exp]	29.9	0.6177

Compare expression of checked genes

Lus10008413 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.